Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0254500 | OGI:08048010 | 49/50 | Minghui 63 | MH63RS3 | HZAU | Chr08:17587372-17587941 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | ATGTCCGTGGCTTCTGGAGCTTCCACTTTTGAAGTCTTGATGACCTTACCTAGGTGGGTAGCACAGGTTAATTTTCTTCTGAAAAGTTTAAATGTTACTGACTAGACAGCTTGGTAATATGTGTGATATACTGACAGTTTATCCACTACTAAACTAAAACATAAGGTGTTTTATACCCTTCTTCATCACTGACTGAAAAATCGTTTGAACTGTGTAGGTTTTGAAATATCTTGCTCAAGAAACATCTTACAAAAGCCTGGTTCCACTTGGAATTGCTTCTGTAAATGGTACTCCAGTTTGTTTGTTCGATAGTCAAGATGTGGATTGGCTTCTTTTCTTTCGCACAATCCTAGATGAAGCTATTGGAACTAGTCTATATCCCCATCCGCCAAGATGGTCTGCATCCCTTGCGAAGGACAGAGTTAAGGGAAGTATGGTGTCAAAACCAGGTAATTCTTAGTGCAAACCGAGTTGGAGTGGACTAGAAACATCTTATGGAAGGGGATTAACCTATTATTTTCATATCCTTTTCAGCTAGGTGAAGGATACAAAGGCAGTGGCAATTTGTAG
More
|
||||||||||
| CDS seq | ATGTCCGTGGCTTCTGGAGCTTCCACTTTTGAAGTCTTGATGACCTTACCTAGGTGGGTAGCACAGGTTTTGAAATATCTTGCTCAAGAAACATCTTACAAAAGCCTGGTTCCACTTGGAATTGCTTCTGTAAATGGTACTCCAGTTTGTTTGTTCGATAGTCAAGATGTGGATTGGCTTCTTTTCTTTCGCACAATCCTAGATGAAGCTATTGGAACTAGTCTATATCCCCATCCGCCAAGATGGTCTGCATCCCTTGCGAAGGACAGAGTTAAGGGAAGTATGGTGTCAAAACCAGGTGAAGGATACAAAGGCAGTGGCAATTTGTAG |
||||||||||
| Protein seq | MSVASGASTFEVLMTLPRWVAQVLKYLAQETSYKSLVPLGIASVNGTPVCLFDSQDVDWLLFFRTILDEAIGTSLYPHPPRWSASLAKDRVKGSMVSKPGEGYKGSGNL |
||||||||||
| Function | AT-rich interactive domain-containing protein 4 [UniProtKB/Swiss-Prot:Q6NQ79] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0254500 | OsMH63_08T0254500.1 | Chr08 | 17587372 | 17587941 | + | maker | ||
| CDS seq | ATGTCCGTGGCTTCTGGAGCTTCCACTTTTGAAGTCTTGATGACCTTACCTAGGTGGGTAGCACAGGTTTTGAAATATCTTGCTCAAGAAACATCTTACAAAAGCCTGGTTCCACTTGGAATTGCTTCTGTAAATGGTACTCCAGTTTGTTTGTTCGATAGTCAAGATGTGGATTGGCTTCTTTTCTTTCGCACAATCCTAGATGAAGCTATTGGAACTAGTCTATATCCCCATCCGCCAAGATGGTCTGCATCCCTTGCGAAGGACAGAGTTAAGGGAAGTATGGTGTCAAAACCAGGTGAAGGATACAAAGGCAGTGGCAATTTGTAG
More
|
|||||||
| Protein seq | MSVASGASTFEVLMTLPRWVAQVLKYLAQETSYKSLVPLGIASVNGTPVCLFDSQDVDWLLFFRTILDEAIGTSLYPHPPRWSASLAKDRVKGSMVSKPGEGYKGSGNL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.2502135 | 3.921672 | 4.3558255 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g27240 | RBH | 0.000000 | 0.115248 | 0.453384 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013340 | RBH | 0.123098 | 0.0 | 3.597636 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013370 | RBH | 0.235518 | 0.000000 | 1.432753 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013220 | RBH | 0.558408 | 0.000000 | 6.952973 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013550 | RBH | 0.061168 | 0.049923 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013190 | RBH | 0.861178 | 6.989181 | 2.950771 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0353000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013290 | RBH | 0.044242 | 0.406149 | 0.822524 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0279700 | RBH | 3.5743385 | 5.4047015 | 16.89886 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012840 | RBH | 0.000000 | 0.086443 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012980 | RBH | 0.107596 | 7.838734 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012860 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013650 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012950 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013040 | RBH | 0.000000 | 1.226739 | 2.515425 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013130 | RBH | 0.000000 | 0.0 | 2.921517 |
| Os XI: R9311 | R9311 | AGIS | R9311C08g29310 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_08g0219800 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_08g0230900 | SBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_08g0207100 | SBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_08g0224000 | SBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0822189100.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0822785700.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0816479900.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0814232100.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0814671700.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0821951100.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0820190100.01 | RBH | None | None | None |
