Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0348600 | OGI:12066840 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr12:24646647-24653473 | ||||||||
| Gene Symbol | OSHB3,Oshox33,SIP22,HB3,OsSIP22,HOX33,OsHox33 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | GCTCAAAGCATACACACATCACACAATTCATAGCATTAGCATAGATAGAAAGAGATACATAGGTCCTGAAACTTGTTCATCCACACAGCAGCAGAAGAAAAAAACCAGGGTTCTAAAATTTTAAGCTTCAAACATGGAGAGACCATACACACAGGTGCTAGCACTAGCTAGGATAAAGCAAGCACCATGCATGTATGGACGCATATGTTTAATACAATACGGTGGTGGTATTCAGGTCTTTGTTCAGTTTGCCACAATGGCACAAAAGCAAAAGCACTAGCTGGAAGCTGGAAACCATGGATGGTGGATCACATGAAGGTCCAGTTGACGAGCATGAAGGCGAGGCAGTGCGGCGCGTCGTCGTCGCTAAGAACCTTCCACGCCACCGCCTGCTCATACGATGCCTGCCGCCCCATGCTCGACTTGCAGACGCCTCCAGGGAGATAGGTGAAACCCTGAAAGAAGATAGACAGACCCCAAACAGGCTTGATCAGGAACATTGCTCATGGTCTGGTAGTACTCTGATGGATGCGTCACCGATTGTCGCGAGGCAGGGACACGGTGGTTTTACCTGCTGCATGATCTTGGGGAACTCCGAGCACAGCGCCTTCCGGCCCTCGTCATCCAGGATCATCTCAAGCGAGATGTCCTGGAGGTTGACCAGCGTCGTCTCGAGGATGTCGAGGCCGGCATTGTTGGCGAAGGTGAACATAGGAGCAGGCTGCCAGTAGATAACCAAACTGACCATTAGCAAGGTTTCCAGAACATGCATGTGATGAAATGAGCATAAAATTAGTGGGCAGCACTACTAACCTTCAGAGAACAGCACAGTATTGCGTCGCTGTGCTTCCACAGGAGCGCCAGGGGAGAATCGGCATCTTCGGTATCAGACCAACGGATATCTGCTCCGGTGTGAGCCCTGAAAGATCCACGGAAATAACTAGTGCATTAACATCATTGATCACAACTTCAGATGTGGCAATGTGTAGGTGGTTCTGATGATGAAGAACCTGAGATAGACTTTTGCTAAAAATAAGTATTTTACTTACCTATAGCTCCTACCAATCCAGCTAGCAAGTGTAAGCGCCTCAGGAGAGGCTGGAGGGTGCTTCATTCCGATCTGGGGTCCAAGTCGAGAAGGAGCTATTGCCACAGCCACCCTCTGCACGGATGCCATCACAGCTCTGACATAACTCCTAGCCATTGCCGCCACGCTCTCACGAAGGTGGTTCTCGTATGAGAATTGGAAAGCAATGGTCAGGACTGATCTGTTGCATGTGCCAGATGCTTCAACTGAAGCACGCGAAGCTCCACCTGGTCCAACCTCAAGGGCGGATGCAAGGTCGAGCGTGCGTGTTGCAGATGGCCCATCCTGCAGGTTTGAGTGCATAACGGTTAATTGGTGAGCCAACATGGGAAAGACAAGGCCTCTGGAATAAGATTATGGACCAGTCATACCATTTTTGTATCTAGTGGTATCACACGGAATCCTGAGGGTAAAAGTGGTGCATCATCAGCAAAAGATTCGTCAATAGGAGCAAAGACAAGCTGTGCAGATGCACTAGTAGCATTCTCATCAACCCCGCTGCAAAGCTGCATAGAAAGCAATCTCTCAGAACCAGGAAAATGCAACAAACAGGTACAACTTAAGGCAATTGTCATGAGCAAGGATTATGTGAAGAATCGGGATGAATGGGGATAGATTGGATTATAGTAGATGAAATAACAAGGAATACGGTCCTGAACCTAAACGGCGCGACGCTCTCCGTCGCACTGAGAAGGCAGGCCGATGGGCACTAAGATAAATCTTGATCTAATGCCTAATTGACCTGAGATAGGATCCCTCCTTATATAGATGGAGGACTCCTTAATCTAATCCTAACAAACCTTATCTAATCCTAACAAACCCTAATCCTATCCAATGGACCTACGACGCCCAGCCCAAAGCCCATGACATTACTCCCCCCTTTTTGAGCAGCTCGTCCTCGAGCTGCAGCACACCCTGCTAGACTTAACGAAGCACCATAACCTAAACTAAGACTCTTAAACCTTTTACATCTCAGCTTTTATTATGAACAAAAATAAAAAATAATTCATGCGCAGGAGGACCTGATCCACCAGAAACCCTGAGCAGAAGGTTAGGCCCATACGGTGGCCAAGAACAGCAGCATGCCTCCCACCGAAGCCCACTTGTCCAGCCCAACAGCAAAGGAATAAATAGTTGACTCGGATGGTCCACAATACCTGTAGAAGGTACATATCCCGTGATAGAAGCACCTCATCATGGCTGAAACCATGTCCTTCGAGCCTAATAACCTCCAAGAACTGCAATTCAGAATGCCAGGTTGATGCATTAATATTTGCCATTCATCGTGGAAAAGGAGCTACAAGCCTACAAGGACTCAATTACAACATTACCTCTTCATGCTCTAAGGTATGAGCGAGGGGTAGTATAACCTGACTGCCCATAAACCCGCTGGTCCTTAAGCCTGGAACTGCATATGGGCTGGCTCGCAAAGAAGCAGCAGAATAAGCATCAACACCAGGATCAGCCCATTCAGAACGATGCTCCCTCAGAAATCGCACAAGTAGAGCAGGAGGTACATTCTACATTATAAAAAAAATGACATTTTGTAAAGCTTAATTCTTTGATTTGGAACAATTTTGGTCAAAGTGAAACAAAGATAGAGACAATCTATAATTAGCTGAGCAACTAAATAGAGCCTATGTCAACCTGAAGTAGCATTGATGCCTTTGCACACAAGATGCCACCTCCAACAGTAGAAAACAGAGGGTTCGGGCTGACATGGGATCCAACAAGCTTGTTTGGAGACGAGTTTACTGAAATTGTAATGTCCTCACTACCATCACTGCTCAACAAAGACCACCCATCATCTGGAAATCCACTAACAGCATCATTGAAACCTCTGCAAATTAGAGTATGGAGTTCAGATGCGTGAGCAATGAGACATGCATGGAACTGTGTCATATGACAGTATGCCAATCGGTTCTAATACATGGGAACCCTCAAATAGCTACAGACCTGCTGAGCCTTTGACTGAAGGTCCTGAAAACAGCAGGCTGGCGACCAGCACCGTAGGGGATTTCACCGCTTGACTCATGTGCAATTTGCCTAATGTGTCGCAATGCCTGAACAGAATGAACCATGTCATTGGTGATCAGAAAAGTTATGCACTCACAATCACCATGAGGTGACCAAGTGCTCTTCAACAACAGAATAAAACAGTGCACATACTGCAATGGTCATCTTCTGTGCAAGGATCTTTGGAGATTCATAGAGCGGTCGAAGAACCTCAGGCACACTCCAAGCCTGTAAAATACACAGGATTAATAAGATATGTATCTCAAAACTATTCAATATTACACTAGTTAATGTGAAAACACTATTGTTACTTACATCCAAATCAACATGATCAACAATGTAAATCATGGAGCCACCTCCCTCACATGGTCGAATCAGATAACCACTGGGAAGTACCTCGGCTCTGATAAAATTCGGAGTGTTAGGCCCAGATGGGCCACCAGTGGACTGAGTCAATGACCTTTCACAGATCTACAGAACAGGAATGGTGTCAAACAATATTTAATACAACAGAAACTACACTTCAGTTGAAAACCATGATGATGTGGTATGATCCAAACAGAACAAGTCCGATCATAACATGACGAATAGACCATACAAGAAAATGAAAGGAAGCATTTTGTTTAATGAGCTGACAGCATGCAATTAAAGATCAAAGTAATACCACAAGACTCCCATCTTCAAGTCCACTTGTGTAGCGGAGAGTCCAAAAGTCGCGTGGTGCCGCCAAAGTTGTCGGTGCATAAGTCTAAGGAATTGAAAAGGGCAATGGTTATTACCAAAAACAAAGAGTAACTAGTGATGCTTGAGAAAAATGCAACACATGAGTCACGATTGGGTATATTTACCTGCATGTAGATTAGCTCAATGGTTCCGCCGTTACCCGTAGGGATAACATGGATGATATCGACGCATCGGCAATCACGGTACCAAGAGGGGCGATCCTTGAGGATCTCCGCAACCTAAAATGAAGCTTATCAGGGTCTGTAGCATGCCAGTTAATGGGAAATGTAACACAATATCAAGGAAAACAAATCATACCTTTGTGGGCTCAAGGCTCACAAGGCCGCAAGCTCGTGCTGCTACGCCACTGCAATTGTGCGAAACAGCGATGATTCCAATGGAATCCGGACCAGGCTGTAATCAAATTTTCATTTCAGTTGATTTGAACAAAAAAAAACATGAATGGAAAGAGAAAATCAACATACTGCACAGTTTTCTTGTACAACGAATACATTACCTTCATCCCAACCATTTGCACCCATTCGACAGCAGTTCCTGTCGCCTTCGACATGAACTCTGCCAAGGTCTCCTCAGCAATAGCGAGAAGACTGCGCAAATAAAATCATCTCAGCAATCTTTCATACAAAAAAGCACGGCCTAACAAAAGAAGAAAATAGACCAGGTTTTGTGGATACCCTGCTGGGTTGTTCGCATCCCTTTGCGGATGCAGAACTGCTGGGTTTTGCTGTTGATGGTGCTGACCACTTGTCACCACAGACTCACAGCTTGTATCTGTGGTGGCTGCAGAAGGCTACAAAGTACATACAAACATTACTGATTAAGAAAACAGGATGATCAAAATATGAAGCAATTGTAAGAACAAAAGCCTGTAAGCACAGGGAGCTCACATTGTGCAGTTGAGTCCGCATGTAGCCGTTCTCGTAGACGAGACGGGACACCTGCTTCTGCAGCCGGTCATTTTCCTCCATCAACAGCTTGTTCATCGCATTCAGCTTCCGGTTCACAGTTTGCAGCCGGGAGGCCTCCTTGCGCTGCTTCTCCCGGCATCTGCCAATTACAAGGAAGGCACAATTTCAGTGGCAAAAGTACATGAATAAACTATCTAAAGGATGGTGTCTTCTAATACACAAGATTCCAATACTTGTTAATGGATACTGATTGGCACAGCCCAAATGAGCACAAAGGAAGTTAGGCAAAGGCATTTTAGCAAATATTCCCCAAGGTTAAAAGGGGGATCATTGAACAGGAACAAGCAAAAGGTCATTTGCAAAAGAGACAAATGACTATATACTATGCAATAACAGTTAGTATTCCATATGTGAAAATCATTGCCTAATTGACAGTGATGTTTCTGTCTGCATCTGTGAACTCAACTCTAAACAAGAGCATCCTCTACCTAAAAAGGATTCTTGATTTATATTTGGCCTTCATGAGTACAGTAATAGTATATACCAAACTTGCTCAAAATGTTGCCCTTCACATTCTTCCACAGTGACACCACTAGTGACAAAACTATTGCCCTACTTGTGATCCACTGAAAAAAGAAAGCGAGATGATAACCAGGAGGTGATGCTTATGGAGGCCTATAGCAAGAAAACATGAACACTACCACAGCCCACAACACAGGGTTAAAAAGATGGCCCTTAAAATGGCAAGCACAGGAAACAAGAAATGACCTAAGGCAATTTTGCTCCAACCAATCATTGGTCACCACAAGCAACAAAACAATCAGAGAGCAAATATTTACAATTTAAACCAAACAAAATTAACTGTAAAGTCTGTACAGAGATCCAGGATATTTGGCTATTCACATCACCACAAAATCCAAGAGGAAACCAACGAATGATGCTGCCATTTCGCTCCCTACCCACCACACAACCCAGCAGAATAATGCAGCGAAGAACAGTGTGGGCACAGGAACTCAAATCATTGCCGCAAAGTTTTATAAAAGAAAATATCCTGATAAATTTCAAGCAAACAGATTGCGCTTCATTATTGCACAAGACGAACTAAAAAAACAAAACCCATCATATAGGATGCAAATCCCAGAAATGAACCTTCTCGTCACCAATCCAACACATTGCAAGCCCTAAAATCAACACCCAAAAGGTTACAGACATCTACAAGTCAAACAGAAAAAAAAAACTCATCTCAAGAACCCAAATCTTCCTCACAAAGGATCCCCCATTCCCACAAGAACATGAAAAAAAACTGCAAACAACAAAGCAATCAATCTCATCACATTACACAAAACCAAGAAAAGAAACCGAAGAACACACGCCATGGCTGCTGAACAAACCCGAGCAGAAACAGATCGAAGAGAGAGAAGGAGATGAGACTGACCTGCGATTCTGGAACCAGACCTTGATCTGCTTGGGCTCGATGTTGCTGAGGATGGGGCACTCCCGGATGAGCTGCTGGCGGCGGAGCGAGCTGGGCTTGGGGCACTCGGTGTACACCCGCTCCAGCGCCTCCACCTGCTCGGGCGTGTACCGGACGTACTTCCCGGCGTCCACCTGCGGCGCCGCCGCCGTCGGGGAGGAGGACGACAGCCTCTCCCCCCTTCCCCCCACCGCCGCCGCTGCCATCCCTCCGCCTCCTCCTCCTCTGCTCCCCTCCTCCTCGTCGCTGCTTGTACAACAACAACCCAGCAAGAACTCGCCGCAGTCATGGCCCGTAGCTCGCAGTCGCAGCTCCCTCTGCCGCCGCCATGGTTGCTCGTGCTCGTGCTCGTGGTGGGGGTGGTTTCTTGGAGGAGGAAGTGGTTGGTGGCCTCTCTCTCGCTTGCTGCTGGTTTTAATACTGCTAGTACTTCACTCCACTCCACTGCGATCGCCTCTCGTCTTCTCTCTGGTCTTCACATGAAGACATCCACTTTCTCTCTCGACCTTTTCTGAGAGAAAGAGAGAGAAAGATTGAATTTTTCTGATCAGAATAGGGTCGTTTCCTTTTTCTGAACTCTCTCTCTCTTTTCTCTTCT
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| CDS seq | ATGGCAGCGGCGGCGGTGGGGGGAAGGGGGGAGAGGCTGTCGTCCTCCTCCCCGACGGCGGCGGCGCCGCAGGTGGACGCCGGGAAGTACGTCCGGTACACGCCCGAGCAGGTGGAGGCGCTGGAGCGGGTGTACACCGAGTGCCCCAAGCCCAGCTCGCTCCGCCGCCAGCAGCTCATCCGGGAGTGCCCCATCCTCAGCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAATCGCAGATGCCGGGAGAAGCAGCGCAAGGAGGCCTCCCGGCTGCAAACTGTGAACCGGAAGCTGAATGCGATGAACAAGCTGTTGATGGAGGAAAATGACCGGCTGCAGAAGCAGGTGTCCCGTCTCGTCTACGAGAACGGCTACATGCGGACTCAACTGCACAATCCTTCTGCAGCCACCACAGATACAAGCTGTGAGTCTGTGGTGACAAGTGGTCAGCACCATCAACAGCAAAACCCAGCAGTTCTGCATCCGCAAAGGGATGCGAACAACCCAGCAGGTCTTCTCGCTATTGCTGAGGAGACCTTGGCAGAGTTCATGTCGAAGGCGACAGGAACTGCTGTCGAATGGGTGCAAATGGTTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGCAGTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGGTTGCGGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGCGTCGATATCATCCATGTTATCCCTACGGGTAACGGCGGAACCATTGAGCTAATCTACATGCAGACTTATGCACCGACAACTTTGGCGGCACCACGCGACTTTTGGACTCTCCGCTACACAAGTGGACTTGAAGATGGGAGTCTTGTGATCTGTGAAAGGTCATTGACTCAGTCCACTGGTGGCCCATCTGGGCCTAACACTCCGAATTTTATCAGAGCCGAGGTACTTCCCAGTGGTTATCTGATTCGACCATGTGAGGGAGGTGGCTCCATGATTTACATTGTTGATCATGTTGATTTGGATGCTTGGAGTGTGCCTGAGGTTCTTCGACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAGCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCTACGGTGCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTGAGCAGTGATGGTAGTGAGGACATTACAATTTCAGTAAACTCGTCTCCAAACAAGCTTGTTGGATCCCATGTCAGCCCGAACCCTCTGTTTTCTACTGTTGGAGGTGGCATCTTGTGTGCAAAGGCATCAATGCTACTTCAGAATGTACCTCCTGCTCTACTTGTGCGATTTCTGAGGGAGCATCGTTCTGAATGGGCTGATCCTGGTGTTGATGCTTATTCTGCTGCTTCTTTGCGAGCCAGCCCATATGCAGTTCCAGGCTTAAGGACCAGCGGGTTTATGGGCAGTCAGGTTATACTACCCCTCGCTCATACCTTAGAGCATGAAGAGTTCTTGGAGGTTATTAGGCTCGAAGGACATGGTTTCAGCCATGATGAGGTGCTTCTATCACGGGATATGTACCTTCTACAGCTTTGCAGCGGGGTTGATGAGAATGCTACTAGTGCATCTGCACAGCTTGTCTTTGCTCCTATTGACGAATCTTTTGCTGATGATGCACCACTTTTACCCTCAGGATTCCGTGTGATACCACTAGATACAAAAATGGATGGGCCATCTGCAACACGCACGCTCGACCTTGCATCCGCCCTTGAGGTTGGACCAGGTGGAGCTTCGCGTGCTTCAGTTGAAGCATCTGGCACATGCAACAGATCAGTCCTGACCATTGCTTTCCAATTCTCATACGAGAACCACCTTCGTGAGAGCGTGGCGGCAATGGCTAGGAGTTATGTCAGAGCTGTGATGGCATCCGTGCAGAGGGTGGCTGTGGCAATAGCTCCTTCTCGACTTGGACCCCAGATCGGAATGAAGCACCCTCCAGCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAGGGCTCACACCGGAGCAGATATCCGTTGGTCTGATACCGAAGATGCCGATTCTCCCCTGGCGCTCCTGTGGAAGCACAGCGACGCAATACTGTGCTGTTCTCTGAAGCCTGCTCCTATGTTCACCTTCGCCAACAATGCCGGCCTCGACATCCTCGAGACGACGCTGGTCAACCTCCAGGACATCTCGCTTGAGATGATCCTGGATGACGAGGGCCGGAAGGCGCTGTGCTCGGAGTTCCCCAAGATCATGCAGCAGGGTTTCACCTATCTCCCTGGAGGCGTCTGCAAGTCGAGCATGGGGCGGCAGGCATCGTATGAGCAGGCGGTGGCGTGGAAGGTTCTTAGCGACGACGACGCGCCGCACTGCCTCGCCTTCATGCTCGTCAACTGGACCTTCATGTGA
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| Protein seq | MAAAAVGGRGERLSSSSPTAAAPQVDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSRLVYENGYMRTQLHNPSAATTDTSCESVVTSGQHHQQQNPAVLHPQRDANNPAGLLAIAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCVDIIHVIPTGNGGTIELIYMQTYAPTTLAAPRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSGPNTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEIPYGAGRQPAVFRTFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNKLVGSHVSPNPLFSTVGGGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAASLRASPYAVPGLRTSGFMGSQVILPLAHTLEHEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDESFADDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGGASRASVEASGTCNRSVLTIAFQFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIGRSYRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALCSEFPKIMQQGFTYLPGGVCKSSMGRQASYEQAVAWKVLSDDDAPHCLAFMLVNWTFM |
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| Function | Homeobox-leucine zipper protein HOX33 [UniProtKB/Swiss-Prot:Q2QM96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0348600 | OsMH63_12T0348600-mRNA-1 | Chr12 | 24646647 | 24653473 | - | maker | ||
| CDS seq | ATGGCAGCGGCGGCGGTGGGGGGAAGGGGGGAGAGGCTGTCGTCCTCCTCCCCGACGGCGGCGGCGCCGCAGGTGGACGCCGGGAAGTACGTCCGGTACACGCCCGAGCAGGTGGAGGCGCTGGAGCGGGTGTACACCGAGTGCCCCAAGCCCAGCTCGCTCCGCCGCCAGCAGCTCATCCGGGAGTGCCCCATCCTCAGCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAATCGCAGATGCCGGGAGAAGCAGCGCAAGGAGGCCTCCCGGCTGCAAACTGTGAACCGGAAGCTGAATGCGATGAACAAGCTGTTGATGGAGGAAAATGACCGGCTGCAGAAGCAGGTGTCCCGTCTCGTCTACGAGAACGGCTACATGCGGACTCAACTGCACAATCCTTCTGCAGCCACCACAGATACAAGCTGTGAGTCTGTGGTGACAAGTGGTCAGCACCATCAACAGCAAAACCCAGCAGTTCTGCATCCGCAAAGGGATGCGAACAACCCAGCAGGTCTTCTCGCTATTGCTGAGGAGACCTTGGCAGAGTTCATGTCGAAGGCGACAGGAACTGCTGTCGAATGGGTGCAAATGGTTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGCAGTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAGGTTGCGGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGCGTCGATATCATCCATGTTATCCCTACGGGTAACGGCGGAACCATTGAGCTAATCTACATGCAGACTTATGCACCGACAACTTTGGCGGCACCACGCGACTTTTGGACTCTCCGCTACACAAGTGGACTTGAAGATGGGAGTCTTGTGATCTGTGAAAGGTCATTGACTCAGTCCACTGGTGGCCCATCTGGGCCTAACACTCCGAATTTTATCAGAGCCGAGGTACTTCCCAGTGGTTATCTGATTCGACCATGTGAGGGAGGTGGCTCCATGATTTACATTGTTGATCATGTTGATTTGGATGCTTGGAGTGTGCCTGAGGTTCTTCGACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAGCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCTACGGTGCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTGAGCAGTGATGGTAGTGAGGACATTACAATTTCAGTAAACTCGTCTCCAAACAAGCTTGTTGGATCCCATGTCAGCCCGAACCCTCTGTTTTCTACTGTTGGAGGTGGCATCTTGTGTGCAAAGGCATCAATGCTACTTCAGAATGTACCTCCTGCTCTACTTGTGCGATTTCTGAGGGAGCATCGTTCTGAATGGGCTGATCCTGGTGTTGATGCTTATTCTGCTGCTTCTTTGCGAGCCAGCCCATATGCAGTTCCAGGCTTAAGGACCAGCGGGTTTATGGGCAGTCAGGTTATACTACCCCTCGCTCATACCTTAGAGCATGAAGAGTTCTTGGAGGTTATTAGGCTCGAAGGACATGGTTTCAGCCATGATGAGGTGCTTCTATCACGGGATATGTACCTTCTACAGCTTTGCAGCGGGGTTGATGAGAATGCTACTAGTGCATCTGCACAGCTTGTCTTTGCTCCTATTGACGAATCTTTTGCTGATGATGCACCACTTTTACCCTCAGGATTCCGTGTGATACCACTAGATACAAAAATGGATGGGCCATCTGCAACACGCACGCTCGACCTTGCATCCGCCCTTGAGGTTGGACCAGGTGGAGCTTCGCGTGCTTCAGTTGAAGCATCTGGCACATGCAACAGATCAGTCCTGACCATTGCTTTCCAATTCTCATACGAGAACCACCTTCGTGAGAGCGTGGCGGCAATGGCTAGGAGTTATGTCAGAGCTGTGATGGCATCCGTGCAGAGGGTGGCTGTGGCAATAGCTCCTTCTCGACTTGGACCCCAGATCGGAATGAAGCACCCTCCAGCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAGGGCTCACACCGGAGCAGATATCCGTTGGTCTGATACCGAAGATGCCGATTCTCCCCTGGCGCTCCTGTGGAAGCACAGCGACGCAATACTGTGCTGTTCTCTGAAGCCTGCTCCTATGTTCACCTTCGCCAACAATGCCGGCCTCGACATCCTCGAGACGACGCTGGTCAACCTCCAGGACATCTCGCTTGAGATGATCCTGGATGACGAGGGCCGGAAGGCGCTGTGCTCGGAGTTCCCCAAGATCATGCAGCAGGGTTTCACCTATCTCCCTGGAGGCGTCTGCAAGTCGAGCATGGGGCGGCAGGCATCGTATGAGCAGGCGGTGGCGTGGAAGGTTCTTAGCGACGACGACGCGCCGCACTGCCTCGCCTTCATGCTCGTCAACTGGACCTTCATGTGA
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| Protein seq | MAAAAVGGRGERLSSSSPTAAAPQVDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSRLVYENGYMRTQLHNPSAATTDTSCESVVTSGQHHQQQNPAVLHPQRDANNPAGLLAIAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCVDIIHVIPTGNGGTIELIYMQTYAPTTLAAPRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSGPNTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEIPYGAGRQPAVFRTFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNKLVGSHVSPNPLFSTVGGGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAASLRASPYAVPGLRTSGFMGSQVILPLAHTLEHEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDESFADDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGGASRASVEASGTCNRSVLTIAFQFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIGRSYRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALCSEFPKIMQQGFTYLPGGVCKSSMGRQASYEQAVAWKVLSDDDAPHCLAFMLVNWTFM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.665956 | 27.3391185 | 20.942633 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0612700 | RBH | 0.269653 | 0.000000 | 1.803211 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41860 | RBH | 0.184650 | 0.000000 | 0.461680 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0612700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020600 | RBH | 0.113476 | 12.697957 | 4.930621 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020700 | RBH | 0.171446 | 1.662015 | 0.536023 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021040 | RBH | 0.0 | 10.210233 | 4.059061 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020360 | RBH | 0.000000 | 0.112457 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019960 | RBH | 0.514669 | 9.036821 | 9.794945 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0430500 | RBH | 8.437253 | 42.530712 | 66.0320775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019850 | RBH | 0.070984 | 0.629952 | 0.812888 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0378100 | RBH | 7.1658025 | 8.8669655 | 66.789135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020080 | RBH | 0.081702 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020320 | RBH | 0.060119 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020260 | RBH | 1.262812 | 16.853708 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020300 | RBH | 0.000000 | 0.0 | 1.197482 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020490 | RBH | 0.049993 | 7.755727 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020000 | RBH | 0.000000 | 2.373137 | 4.653132 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019800 | RBH | 0.335180 | 9.761758 | 1.119899 |
| Os XI: R9311 | R9311 | AGIS | R9311C12g40131 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_12g0234700 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_12g0243100 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0232900 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0240200 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1224782800.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1239205800.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_032695 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1234731000.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1237322400.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1228622800.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1234834200.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1233258200.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1227598800.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1223678400.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1219381400.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1228939800.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1237212000.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1224377600.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1235849000.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1219443600.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1225411400.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1226838800.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1233742600.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1222095000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1225011800.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1246769800.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1232905600.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1228329800.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1223222200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1228913600.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1231283200.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1233312800.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1233367800.01 | RBH | None | None | None |
