Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_12g0019850 | OGI:12066840 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr12:23946865-23951187 | ||||||||
| Gene Symbol | HOX33, Oshox33, OsHox33, OSHB3, HB3, SIP22, OsSIP22 | ||||||||||
| DNA seq | GCTCAAAGCATACACACATCACACAATTCATAGCATTAGCATAGATAGAAAGAGATACATAGGTCCTGAAACTTGTTCATCCACACAGCAGCAGAAGAAAAAAACCAGGGTTCTAAAATTTTAAGCTTCAAACATGGAGAGACCATACACACAGGTGCTAGCACTAGCTAGGATAAAGCAAGCACCATGCATGTATGGACGCATATGTTTAATACAATACGGTGGTGGTATTCAGGTCTTTGTTCAGTTTGCCACAATGGCACAAAAGCAAAAGCACTAGCTGGAAGCTGGAAACCATGGATGGTGGATCACATGAAGGTCCAGTTGACGAGCATGAAGGCGAGGCAGTGCGGCGCGTCGTCGTCGCTAAGAACCTTCCACGCCACCGCCTGCTCATACGATGCCTGCCGCCCCATGCTCGACTTGCAGACGCCTCCAGGGAGATAGGTGAAACCCTGAAAGAAGATAGACAGACCCCAAACAGGCTTGATCAGGAACATTGCTCATGGTCTGGTAGTACTCTGATGGATGCGTCACCGATTGTCGCGAGGCAGGGACACGGTGGTTTTACCTGCTGCATGATCTTGGGGAACTCCGAGCACAGCGCCTTCCGGCCCTCGTCATCCAGGATCATCTCAAGCGAGATGTCCTGGAGGTTGACCAGCGTCGTCTCGAGGATGTCGAGGCCGGCATTGTTGGCGAAGGTGAACATAGGAGCAGGCTGCCAGTAGATAACCAAACTGACCATTAGCAAGGTTTCCAGAACATGCATGTGATGAAATGAGCATAAAATTAGTGGGCAGCACTACTAACCTTCAGAGAACAGCACAGTATTGCGTCGCTGTGCTTCCACAGGAGCGCCAGGGGAGAATCGGCATCTTCGGTATCAGACCAACGGATATCTGCTCCGGTGTGAGCCCTGAAAGATCCACGGAAATAACTAGTGCATTAACATCATTGATCACAACTTCAGATGTGGCAATGTGTAGGTGGTTCTGATGATGAAGAACCTGAGATAGACTTTTGCTAAAAATAAGTATTTTACTTACCTATAGCTCCTACCAATCCAGCTAGCAAGTGTAAGCGCCTCAGGAGAGGCTGGAGGGTGCTTCATTCCGATCTGGGGTCCAAGTCGAGAAGGAGCTATTGCCACAGCCACCCTCTGCACGGATGCCATCACAGCTCTGACATAACTCCTAGCCATTGCCGCCACGCTCTCACGAAGGTGGTTCTCGTATGAGAATTGGAAAGCAATGGTCAGGACTGATCTGTTGCATGTGCCAGATGCTTCAACTGAAGCACGCGAAGCTCCACCTGGTCCAACCTCAAGGGCGGATGCAAGGTCGAGCGTGCGTGTTGCAGATGGCCCATCCTGCAGGTTTGAGTGCATAACGGTTAATTGGTGAGCCAACATGGGAAAGACAAGGCCTCTGGAATAAGATTATGGACCAGTCATACCATTTTTGTATCTAGTGGTATCACACGGAATCCTGAGGGTAAAAGTGGTGCATCATCAGCAAAAGATTCGTCAATAGGAGCAAAGACAAGCTGTGCAGATGCACTAGTAGCATTCTCATCAACCCCGCTGCAAAGCTGCATAGAAAGCAATCTCTCAGAACCAGGAAAATGCAACAAACAGGTACAACTTAAGGCAATTGTCATGAGCAAGGATTATGTGAAGAATCGGGATGAATGGGGATAGATTGGATTATAGTAGATGAAATAACAAGGAATACGGTCCTGAACCTAAACGGCGCGACGCTCTCCGTCGCACTGAGAAGGCAGGCCGATGGGCACTAAGATAAATCTTGATCTAATGCCTAATTGACCTGAGATAGGATCCCTCCTTATATAGATGGAGGACTCCTTAATCTAATCCTAACAAACCTTATCTAATCCTAACAAACCCTAATCCTATCCAATGGACCTACGACGCCCAGCCCAAAGCCCATGACATTACTCCCCCCTTTTTGAGCAGCTCGTCCTCGAGCTGCAGCACACCCTGCTAGACTTAACGAAGCACCATAACCTAAACTAAGACTCTTAAACCTTTTACATCTCAGCTTTTATTATGAACAAAAATAAAAAATAATTCATGCGCAGGAGGACCTGATCCACCAGAAACCCTGAGCAGAAGGTTAGGCCCATACGGTGGCCAAGAACAGCAGCATGCCTCCCACCGAAGCCCACTTGTCCAGCCCAACAGCAAAGGAATAAATAGTTGACTCGGATGGTCCACAATACCTGTAGAAGGTACATATCCCGTGATAGAAGCACCTCATCATGGCTGAAACCATGTCCTTCGAGCCTAATAACCTCCAAGAACTGCAATTCAGAATGCCAGGTTGATGCATTAATATTTGCCATTCATCGTGGAAAAGGAGCTACAAGCCTACAAGGACTCAATTACAACATTACCTCTTCATGCTCTAAGGTATGAGCGAGGGGTAGTATAACCTGACTGCCCATAAACCCGCTGGTCCTTAAGCCTGGAACTGCATATGGGCTGGCTCGCAAAGAAGCAGCAGAATAAGCATCAACACCAGGATCAGCCCATTCAGAACGATGCTCCCTCAGAAATCGCACAAGTAGAGCAGGAGGTACATTCTACATTATAAAAAAAATGACATTTTGTAAAGCTTAATTCTTTGATTTGGAACAATTTTGGTCAAAGTGAAACAAAGATAGAGACAATCTATAATTAGCTGAGCAACTAAATAGAGCCTATGTCAACCTGAAGTAGCATTGATGCCTTTGCACACAAGATGCCACCTCCAACAGTAGAAAACAGAGGGTTCGGGCTGACATGGGATCCAACAAGCTTGTTTGGAGACGAGTTTACTGAAATTGTAATGTCCTCACTACCATCACTGCTCAACAAAGACCACCCATCATCTGGAAATCCACTAACAGCATCATTGAAACCTCTGCAAATTAGAGTATGGAGTTCAGATGCGTGAGCAATGAGACATGCATGGAACTGTGTCATATGACAGTATGCCAATCGGTTCTAATACATGGGAACCCTCAAATAGCTACAGACCTGCTGAGCCTTTGACTGAAGGTCCTGAAAACAGCAGGCTGGCGACCAGCACCGTAGGGGATTTCACCGCTTGACTCATGTGCAATTTGCCTAATGTGTCGCAATGCCTGAACAGAATGAACCATGTCATTGGTGATCAGAAAAGTTATGCACTCACAATCACCATGAGGTGACCAAGTGCTCTTCAACAACAGAATAAAACAGTGCACATACTGCAATGGTCATCTTCTGTGCAAGGATCTTTGGAGATTCATAGAGCGGTCGAAGAACCTCAGGCACACTCCAAGCCTGTAAAATACACAGGATTAATAAGATATGTATCTCAAAACTATTCAATATTACACTAGTTAATGTGAAAACACTATTGTTACTTACATCCAAATCAACATGATCAACAATGTAAATCATGGAGCCACCTCCCTCACATGGTCGAATCAGATAACCACTGGGAAGTACCTCGGCTCTGATAAAATTCGGAGTGTTAGGCCCAGATGGGCCACCAGTGGACTGAGTCAATGACCTTTCACAGATCTACAGAACAGGAATGGTGTCAAACAATATTTAATACAACAGAAACTACACTTCAGTTGAAAACCATGATGATGTGGTATGATCCAAACAGAACAAGTCCGATCATAACATGACGAATAGACCATACAAGAAAATGAAAGGAAGCATTTTGTTTAATGAGCTGACAGCATGCAATTAAAGATCAAAGTAATACCACAAGACTCCCATCTTCAAGTCCACTTGTGTAGCGGAGAGTCCAAAAGTCGCGTGGTGCCGCCAAAGTTGTCGGTGCATAAGTCTAAGGAATTGAAAAGGGCAATGGTTATTACCAAAAACAAAGAGTAACTAGTGATGCTTGAGAAAAATGCAACACATGAGTCACGATTGGGTATATTTACCTGCATGTAGATTAGCTCAATGGTTCCGCCGTTACCCGTAGGGATAACATGGATGATATCGACGCATCGGCAATCACGGTACCAAGAGGGGCGATCCTTGAGGATCTCCGCAACCTAAAATGAAGCTTATCAGGGTCTGTAGCATGCCAGTTAATGGGAAATGTAACACAATATCAAGGAAAACAAATCATACCTTTGTGGGCTCAAGGCTCACAAGGCCGCAAGCTCGTGCTGCTACGCCACTGCAATTGTGCGAAACAGCGATGATTCCAATGGAATCCGGACCAGGCTGTAATCAAATTTTCATTTCAGTTGATTTGAACAAAAAAAAACATGAATGGAAAGAGAAAATCAACATACTGCACAGTTTTC
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| CDS seq | ATGCAGACTTATGCACCGACAACTTTGGCGGCACCACGCGACTTTTGGACTCTCCGCTACACAAGTGGACTTGAAGATGGGAGTCTTGTGATCTGTGAAAGGTCATTGACTCAGTCCACTGGTGGCCCATCTGGGCCTAACACTCCGAATTTTATCAGAGCCGAGGTACTTCCCAGTGGTTATCTGATTCGACCATGTGAGGGAGGTGGCTCCATGATTTACATTGTTGATCATGTTGATTTGGATGCTTGGAGTGTGCCTGAGGTTCTTCGACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAGCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCTACGGTGCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTGAGCAGTGATGGTAGTGAGGACATTACAATTTCAGTAAACTCGTCTCCAAACAAGCTTGTTGGATCCCATGTCAGCCCGAACCCTCTGTTTTCTACTGTTGGAGGTGGCATCTTGTGTGCAAAGGCATCAATGCTACTTCAGAATGTACCTCCTGCTCTACTTGTGCGATTTCTGAGGGAGCATCGTTCTGAATGGGCTGATCCTGGTGTTGATGCTTATTCTGCTGCTTCTTTGCGAGCCAGCCCATATGCAGTTCCAGGCTTAAGGACCAGCGGGTTTATGGGCAGTCAGGTTATACTACCCCTCGCTCATACCTTAGAGCATGAAGAGTTCTTGGAGGTTATTAGGCTCGAAGGACATGGTTTCAGCCATGATGAGGTGCTTCTATCACGGGATATGTACCTTCTACAGCTTTGCAGCGGGGTTGATGAGAATGCTACTAGTGCATCTGCACAGCTTGTCTTTGCTCCTATTGACGAATCTTTTGCTGATGATGCACCACTTTTACCCTCAGGATTCCGTGTGATACCACTAGATACAAAAATGGATGGGCCATCTGCAACACGCACGCTCGACCTTGCATCCGCCCTTGAGGTTGGACCAGGTGGAGCTTCGCGTGCTTCAGTTGAAGCATCTGGCACATGCAACAGATCAGTCCTGACCATTGCTTTCCAATTCTCATACGAGAACCACCTTCGTGAGAGCGTGGCGGCAATGGCTAGGAGTTATGTCAGAGCTGTGATGGCATCCGTGCAGAGGGTGGCTGTGGCAATAGCTCCTTCTCGACTTGGACCCCAGATCGGAATGAAGCACCCTCCAGCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAGGGCTCACACCGGAGCAGATATCCGTTGGTCTGATACCGAAGATGCCGATTCTCCCCTGGCGCTCCTGTGGAAGCACAGCGACGCAATACTGTGCTGTTCTCTGAAGCCTGCTCCTATGTTCACCTTCGCCAACAATGCCGGCCTCGACATCCTCGAGACGACGCTGGTCAACCTCCAGGACATCTCGCTTGAGATGATCCTGGATGACGAGGGCCGGAAGGCGCTGTGCTCGGAGTTCCCCAAGATCATGCAGCAGGGTTTCACCTATCTCCCTGGAGGCGTCTGCAAGTCGAGCATGGGGCGGCAGGCATCGTATGAGCAGGCGGTGGCGTGGAAGGTTCTTAGCGACGACGACGCGCCGCACTGCCTCGCCTTCATGCTCGTCAACTGGACCTTCATG
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| Protein seq | MQTYAPTTLAAPRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSGPNTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEIPYGAGRQPAVFRTFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNKLVGSHVSPNPLFSTVGGGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAASLRASPYAVPGLRTSGFMGSQVILPLAHTLEHEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDESFADDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGGASRASVEASGTCNRSVLTIAFQFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIGRSYRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALCSEFPKIMQQGFTYLPGGVCKSSMGRQASYEQAVAWKVLSDDDAPHCLAFMLVNWTFM |
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| Function | Homeobox-leucine zipper protein HOX33 [UniProtKB/Swiss-Prot:Q2QM96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_12g0019850 | OsIR64_12g0019850.01 | Chr12 | 23946865 | 23951187 | - | NAM | ||
| CDS seq | ATGCAGACTTATGCACCGACAACTTTGGCGGCACCACGCGACTTTTGGACTCTCCGCTACACAAGTGGACTTGAAGATGGGAGTCTTGTGATCTGTGAAAGGTCATTGACTCAGTCCACTGGTGGCCCATCTGGGCCTAACACTCCGAATTTTATCAGAGCCGAGGTACTTCCCAGTGGTTATCTGATTCGACCATGTGAGGGAGGTGGCTCCATGATTTACATTGTTGATCATGTTGATTTGGATGCTTGGAGTGTGCCTGAGGTTCTTCGACCGCTCTATGAATCTCCAAAGATCCTTGCACAGAAGATGACCATTGCAGCATTGCGACACATTAGGCAAATTGCACATGAGTCAAGCGGTGAAATCCCCTACGGTGCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTGAGCAGTGATGGTAGTGAGGACATTACAATTTCAGTAAACTCGTCTCCAAACAAGCTTGTTGGATCCCATGTCAGCCCGAACCCTCTGTTTTCTACTGTTGGAGGTGGCATCTTGTGTGCAAAGGCATCAATGCTACTTCAGAATGTACCTCCTGCTCTACTTGTGCGATTTCTGAGGGAGCATCGTTCTGAATGGGCTGATCCTGGTGTTGATGCTTATTCTGCTGCTTCTTTGCGAGCCAGCCCATATGCAGTTCCAGGCTTAAGGACCAGCGGGTTTATGGGCAGTCAGGTTATACTACCCCTCGCTCATACCTTAGAGCATGAAGAGTTCTTGGAGGTTATTAGGCTCGAAGGACATGGTTTCAGCCATGATGAGGTGCTTCTATCACGGGATATGTACCTTCTACAGCTTTGCAGCGGGGTTGATGAGAATGCTACTAGTGCATCTGCACAGCTTGTCTTTGCTCCTATTGACGAATCTTTTGCTGATGATGCACCACTTTTACCCTCAGGATTCCGTGTGATACCACTAGATACAAAAATGGATGGGCCATCTGCAACACGCACGCTCGACCTTGCATCCGCCCTTGAGGTTGGACCAGGTGGAGCTTCGCGTGCTTCAGTTGAAGCATCTGGCACATGCAACAGATCAGTCCTGACCATTGCTTTCCAATTCTCATACGAGAACCACCTTCGTGAGAGCGTGGCGGCAATGGCTAGGAGTTATGTCAGAGCTGTGATGGCATCCGTGCAGAGGGTGGCTGTGGCAATAGCTCCTTCTCGACTTGGACCCCAGATCGGAATGAAGCACCCTCCAGCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAGGGCTCACACCGGAGCAGATATCCGTTGGTCTGATACCGAAGATGCCGATTCTCCCCTGGCGCTCCTGTGGAAGCACAGCGACGCAATACTGTGCTGTTCTCTGAAGCCTGCTCCTATGTTCACCTTCGCCAACAATGCCGGCCTCGACATCCTCGAGACGACGCTGGTCAACCTCCAGGACATCTCGCTTGAGATGATCCTGGATGACGAGGGCCGGAAGGCGCTGTGCTCGGAGTTCCCCAAGATCATGCAGCAGGGTTTCACCTATCTCCCTGGAGGCGTCTGCAAGTCGAGCATGGGGCGGCAGGCATCGTATGAGCAGGCGGTGGCGTGGAAGGTTCTTAGCGACGACGACGCGCCGCACTGCCTCGCCTTCATGCTCGTCAACTGGACCTTCATG
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| Protein seq | MQTYAPTTLAAPRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSGPNTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESSGEIPYGAGRQPAVFRTFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNKLVGSHVSPNPLFSTVGGGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAASLRASPYAVPGLRTSGFMGSQVILPLAHTLEHEEFLEVIRLEGHGFSHDEVLLSRDMYLLQLCSGVDENATSASAQLVFAPIDESFADDAPLLPSGFRVIPLDTKMDGPSATRTLDLASALEVGPGGASRASVEASGTCNRSVLTIAFQFSYENHLRESVAAMARSYVRAVMASVQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIGRSYRAHTGADIRWSDTEDADSPLALLWKHSDAILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALCSEFPKIMQQGFTYLPGGVCKSSMGRQASYEQAVAWKVLSDDDAPHCLAFMLVNWTFM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.070984 | 0.629952 | 0.812888 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0612700 | RBH | 0.269653 | 0.000000 | 1.803211 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41860 | RBH | 0.184650 | 0.000000 | 0.461680 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0612700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020600 | RBH | 0.113476 | 12.697957 | 4.930621 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020700 | RBH | 0.171446 | 1.662015 | 0.536023 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021040 | RBH | 0.0 | 10.210233 | 4.059061 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020360 | RBH | 0.000000 | 0.112457 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019960 | RBH | 0.514669 | 9.036821 | 9.794945 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0348600 | RBH | 6.665956 | 27.3391185 | 20.942633 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027020 | RBH | 0.187843 | 0.553652 | 1.069365 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0378100 | RBH | 7.1658025 | 8.8669655 | 66.789135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020080 | RBH | 0.081702 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020320 | RBH | 0.060119 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020260 | RBH | 1.262812 | 16.853708 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020300 | RBH | 0.000000 | 0.0 | 1.197482 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020490 | RBH | 0.049993 | 7.755727 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020000 | RBH | 0.000000 | 2.373137 | 4.653132 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019800 | RBH | 0.335180 | 9.761758 | 1.119899 |
