Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0008200 | OGI:11001580 | 37/50 | Minghui 63 | MH63RS3 | HZAU | Chr11:466007-470222 | ||||||||
| Gene Symbol | OsDRM1a,DRM1A | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | ATGAGGATAGCGAGTTCGAGTGGGATACTGATGGTGAGTCTGAGGCCACGTTTGCTCCAGCCTTTTCGAACACGGATGCGCCTGGTCCGTCCACGAGACCCAGGCTGCAAGTTGGAGATATAAGTCTAGTTGAACACACACGAGCTGGTCATTTGTTTTAACCATGATATTACCTTACTATAATTATAATCATAATATGGTGTTTGTCTAAAGGATGCTAATGGGAAGGCCAATGGATCAGCACCATCAGCTTTGGTTGCTTACTTTTTGGGAATGGGTTTCTCGAGAGAGATGGTCTTCAGAGCTATCAAGGAGATTGGTAATGATAACAATAATACATTTCCTCATTTGCTTAGGTTGCATTTTGCATCTTTTGTTTCAACTGTTGCCGTTTCTTTCAGGGGACACAGATTCGGAGCAAATTCTTGAGTTACTTCTCACTTATCAGGTATTTGCTCACGTGGTTGCATCACTTTGTTTATTATCTAATGCTCTATTGTACAAGTCATGTTACGTAACACTGTAATGCAGGCGATAGGCAGTGACCCTTCAGTGGGTAACAGCTCTCATTCTGCCTGTGACCCCCAGATTCTTGAAGAAGAAGATGAGGAGGAGGATGTTAATTGGGACGAGGATGATACTGTTGACAATTTTGATAGGGCTACTTACTCTGATGGTTCTGGTGATGAGGTATTCACATGACTCCCTCCTTGGTCATTATATATTTATATCAGACATGATCGAACCTTTGTTACACTTGTTTCATGCCAAGCACACATTCCCTTTTAGTGCTTGTCTAAATTATCTATTGGTCTTGGTCCAATAAATTGGAAGGTTTTGTGACTTAAGTTATGCTTCACTTTTATTTAGTAAACAAGTGTACATGCTTACCTGTACTGCAATGCTGTAGTTTTTTGGGTTATCTATAAAACAATACCTGTTCCTATAGGGTTGTTAAAGGATCTTTGTTGATCCTGCTCTTGCTTCTATGTTTCTTTAGCTGGCATTTTTGTATGGTGCCTTTATAGTGAGAGAGATAGCAGAACTACTACAGAACCATCAAAGAGATGATCATATACTTCTACAAGGTCGTATTCAAACCAAGCAATGATGAAAGATAGTCTACTGAATGCCTATAATTGAATGGTTGCAAGTTAAGACCACCAGACAGAACAATGATAACCACTGGCTACATCTGAAAACATAATAGACAACAAAAAATGGAACTGAAATGATGCCTATGAGAGCTTAGGTAATCTGTGCTGGGCATTTATCCATGTGTTGATGATTGATAAGCTGTACTCCCCCTCCTTTTTGTGGTCTAACATGCTTTATTGTTTCACCATTTTTTAAATAGTTTTACTACTTTTTCATTACATCTTTAGTATGAGTTTCCTCTAACTTTAATCCTCAAAATAAGTTCCTCTATAGTATGGTAGTATCTGTTTGCATGGAGTTGTAAGACGCAACAACAAATTTGACACAGAAGGATAATCGTATATTTTGTTGCAGTAAATTTGGGTGTACATGCATATATGTGATGCCTGCATTAGTTGCTTTGTTGGGAGGCTATTTCAGACTGCAATTCATGAGTGAGATGTAGCAAATGTTTTCAGTCTGCTTGTAATGTGCTTTGTTGCAGGACTTTTTACAAGAGATGTCCGAGAAAGATGAGAAAATCAAGTCCTTAGTCAGCATGGGTTTTCCTGAAGATGAAGTAATGAGGGCTATTATTAGATGCGGTATACCTCTATTGAAGTTGCTGCTTTGACAGTAAGGAGCCTTATACTGCCTATGCTGGGTTAAAATTTGGCAGGTCTGGATGCGTCTGTAGATTTGTTGGTTGAGTCAATCTATGCACCAGCGACTGCAGGAAATGTTTGTTTTACAAACTTATCTGACTATGAAGTATGGGTACCTTGTGATTATAGAGCATCTGAATGGTGAAATTGTTTTCATTTCTTTAATGTAATGCCACTGGCATAATGTTTATTTTTGTGCAGGATACAGAGTTTAGTTCCTTTGGAGGAAGAAAGAAAACAAAATTAATAGATGGAAGCAAGAAAAAAAGAGAACGGTATAGAAGTAGACCACAATGGAATCAAGTGCCATTTGACGGCAGCCATGAAGAGCCAATGCCTCTTCCAAATTCAATGGTGGGATTCAGCTTGCCCAATGACGGGTTAAGGTCAGTCCACAGAAACCTTCCTGACCAGGCTCTTGGACCACCATTCTTTTACTATGAAAACGTGGCCCTAGCTCCAAAAGGTGTATGGACGACCATCTCAAGATTCTTGTATGACATTTATCCTGAGTTCGTATATTCCAAATACTTCTGTGCTGCTGCTAGGAAGAGGGGTTACATCCATAACTTGCCGATTAAGAACAGGTCACCTGTTCTTCCCATTCCCCCAAAGACAATATCTGAAGCCTTTCCTTCTACTAAGATGTGGTGGCCCTTTTGGGATCCAAGAAGGCAGTTCAACTGCTTGCAAACTTGTGTGGCAAGCGCAAAGCATACAGAACGGATACGATGTGCTCTTGGTAGATTCGGCGATGCACTACCTCCAGCAGTTCAGAAGAGTGTCTTGGAAGAATGTAGGAAGTGGAACCTTGTCTAGGTTGGAAAGAACAAGGTTGCTACTCTAGAGCCTGATGAGATGGAATTCCTATTGGGATACCCTAGGATGTTGGATAAGTCTTTGTGGTCCTTGGTCGTGATTCTTCTTTTTGCTTTTGGGTAGTTTCACCTTTTCAGGACAGCATCTACCCTTTAGCATATTTTTCAGTTGCTAGGACAGCTACGGTTAGTAGGACAGCAGCAGTTAGCATCTCCTTTATGCCTCCTTTATGCTTTATTCAGTTTGGATGCCCTCTAGGACAGCATCCCATTCAAATTTCGAATTTTAGACTAGGAGGGTGCAGCAATAGGCTAGTAGCCAGCTATGGCTATATATATGTATCCAACCTCTCTCGGGTAGGTATGGCTTTTGTGTTTTGTGAATGAAGAAAACCAGAAAATTGCCCCATCTCGAGTGCCATCCTCTTCTCAATGAGAGTAACCATTGAAATTCTAACATAGGAATTATACCAGGGGAGTTAGCAGGACAGCGAGATATAGAGCTCTTGGGAATTCATTCCAAGTTGATACAGTTGCCTACCACCTCTCTGTGCTGAGGGACATATTCCCTAATGGCATGAACGTCTTGTCCTTGTTTTCTGGTATTGGTGGAGCAGAAGTAGCTCTCCACAGGCTTGGAATCTGTATGAAGACAGTGGTCTTAGTCGAAATATCAGAGGTAAACATGACGTTGCTGAGGAGTTGGTGGGACCAGACCCAAACTGGCACGCTGATTGAAATCGCAGATGTTCAAAATCTTACTGCTGAAAGAATTGAACTATTCATCAGAAGATTTGGTGGCTTTGACCTGGTGATCGGGGGCAGCCCGTGCAACAACCTCGCTGGTAGCAACAGATACCACCGTGATGGCTTGGAGGGCAAGCACTCAGCACTATTCTATCACTACTACAGAATCTTGGATTCTGTAAAGACTATTATGGCTAGCATGTAAGCTAGCCCATTAACGAACTCTGTGAATTATTGTTGCTAATGAAATTGGAACCTGATGGTTGACCTTCTTTCACAAGGTTTCTCTTGCCATGGCTCAATACGTTCTACTAATTTACCCCAAGTGCAAAATGCTCCTTCCATTTTGATAATGCTTGCAGTTTTGGTGCGAAAGGTATGAAAATTACATCTGACAACATGTCTCTCATTTTTGTACTACTATTATGTATACAAACTGAAGATTGCCATGGAGGAATAGGCTAATGCTATTAAGGGGCTTTGTTTGATTACTACAAGCTGAATTATGAACATGATTTGAGCACCATACGCTAGATTCATCTCTGCTTTTGCTGAAGTTGAAATTCTGCAACCTGAATTGTACCTGCATTTCTATAATAACCTTTATTTATTTTGACTGTGCCTGAATGTCTATAGCTTGCACCTCCAATGCAAGTACATTTCCCTTTTTCCTGTTGATATGCACAATTCACTTGATATATCTTTACTATAACAAAATCTTGAATCTTTGAAGGAAAGTTGTTTCGCCATGTTCGCAAGGCCCTTCTGTTGAAACAATCCTCCTCCTTGACACTGAAAACTGAACAAGATCCTTCCAATAACAGTGATAAGGATTCCATGGACAAATAA
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| CDS seq | ATGAGGATAGCGAGTTCGAGTGGGATACTGATGGATGCTAATGGGAAGGCCAATGGATCAGCACCATCAGCTTTGGTTGCTTACTTTTTGGGAATGGGTTTCTCGAGAGAGATGGTCTTCAGAGCTATCAAGGAGATTGGGGACACAGATTCGGAGCAAATTCTTGAGTTACTTCTCACTTATCAGGCGATAGGCAGTGACCCTTCAGTGGGTAACAGCTCTCATTCTGCCTGTGACCCCCAGATTCTTGAAGAAGAAGATGAGGAGGAGGATGTTAATTGGGACGAGGATGATACTGTTGACAATTTTGATAGGGCTACTTACTCTGATGGTTCTGGTGATGAGGACTTTTTACAAGAGATGTCCGAGAAAGATGAGAAAATCAAGTCCTTAGTCAGCATGGGTTTTCCTGAAGATGAAGTAATGAGGGCTATTATTAGATGCGGATACAGAGTTTAG
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| Protein seq | MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGDTDSEQILELLLTYQAIGSDPSVGNSSHSACDPQILEEEDEEEDVNWDEDDTVDNFDRATYSDGSGDEDFLQEMSEKDEKIKSLVSMGFPEDEVMRAIIRCGYRV |
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| Function | DNA (cytosine-5)-methyltransferase DRM1A [UniProtKB/Swiss-Prot:Q2RBJ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0008200 | OsMH63_11T0008200-mRNA-1 | Chr11 | 466007 | 470222 | + | maker | ||
| CDS seq | ATGAGGATAGCGAGTTCGAGTGGGATACTGATGGATGCTAATGGGAAGGCCAATGGATCAGCACCATCAGCTTTGGTTGCTTACTTTTTGGGAATGGGTTTCTCGAGAGAGATGGTCTTCAGAGCTATCAAGGAGATTGGGGACACAGATTCGGAGCAAATTCTTGAGTTACTTCTCACTTATCAGGCGATAGGCAGTGACCCTTCAGTGGGTAACAGCTCTCATTCTGCCTGTGACCCCCAGATTCTTGAAGAAGAAGATGAGGAGGAGGATGTTAATTGGGACGAGGATGATACTGTTGACAATTTTGATAGGGCTACTTACTCTGATGGTTCTGGTGATGAGGACTTTTTACAAGAGATGTCCGAGAAAGATGAGAAAATCAAGTCCTTAGTCAGCATGGGTTTTCCTGAAGATGAAGTAATGAGGGCTATTATTAGATGCGGATACAGAGTTTAG
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| Protein seq | MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGDTDSEQILELLLTYQAIGSDPSVGNSSHSACDPQILEEEDEEEDVNWDEDDTVDNFDRATYSDGSGDEDFLQEMSEKDEKIKSLVSMGFPEDEVMRAIIRCGYRV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0.0035705 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0108900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01810 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0108900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000640 | RBH | 0.0 | 0.0 | 0.440392 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000670 | RBH | 0.0 | 0.0 | 0.402789 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000650 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000650 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000650 | SBH | 0.0 | 0.0 | 0.886480 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000640 | SBH | 0.0 | 0.0 | 0.111215 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0009400 | RBH | 0 | 0 | 0.0045995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000520 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000670 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000680 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000660 | RBH | 0.0 | 0.0 | 0.116823 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000640 | SBH | 0.0 | 0.0 | 0.000000 |
| Os XI: R9311 | R9311 | AGIS | R9311C12g38109 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0007900 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_11g0007100 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0007100 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0007500 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223495900.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_027736 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1130814300.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1235286100.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1124005300.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1231991300.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231085900.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1121413100.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1120301500.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1218220700.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1226856100.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1121749100.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G1118115500.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1223014900.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1231277500.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1220809500.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1121961500.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1141205100.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1128207900.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1118572500.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1230346900.01 | RBH | None | None | None |
