Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os11g01810		OGI:11001580 \| 7/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr11:428373-432588		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		DRM1A, OsDRM1a
DNA seq		ATGAGGATAGCGAGTTCGAGTGGGATACTGATGGTGAGTCTGAGGCCACGTTTGCTCCAGCCTTTTCGAACACGGATGCGCCTGGTCCGTCCACGAGACCCAGGCTGCAAGTTGGAGATATAAGTCTAGTTGAACACACACGAGCTGGTCATTTGTTTTAACCATGATATTACCTTACTATAATTATAATCATAATATGGTGTTTGTCTAAAGGATGCTAATGGGAAGGCCAATGGATCAGCACCATCAGCTTTGGTTGCTTACTTTTTGGGAATGGGTTTCTCGAGAGAGATGGTCTTCAGAGCTATCAAGGAGATTGGTAATGATAACAATAATACATTTCCTCATTTGCTTAGGTTGCATTTTGCATCTTTTGTTTCAACTGTTGCCGTTTCTTTCAGGGGACACAGATTCGGAGCAAATTCTTGAGTTACTTCTCACTTATCAGGTATTTGCTCACGTGGTTGCATCACTTTGTTTATTATCTAATGCTCTATTGTACAAGTCATGTTACGTAACACTGTAATGCAGGCGATAGGCAGTGACCCTTCAGTGGGTAACAGCTCTCATTCTGCCTGTGACCCCCAGATTCTTGAAGAAGAAGATGAGGAGGAGGATGTTAATTGGGACGAGGATGATACTGTTGACAATTTTGATAGGGCTACTTACTCTGATGGTTCTGGTGATGAGGTATTCACATGACTCCCTCCTTGGTCATTATATATTTATATCAGACATGATCGAACCTTTGTTACACTTGTTTCATGCCAAGCACACATTCCCTTTTAGTGCTTGTCTAAATTATCTATTGGTCTTGGTCCAATAAATTGGAAGGTTTTGTGACTTAAGTTATGCTTCACTTTTATTTAGTAAACAAGTGTACATGCTTACCTGTACTGCAATGCTGTAGTTTTTTGGGTTATCTATAAAACAATACCTGTTCCTATAGGGTTGTTAAAGGATCTTTGTTGATCCTGCTCTTGCTTCTATGTTTCTTTAGCTGGCATTTTTGTATGGTGCCTTTATAGTGAGAGAGATAGCAGAACTACTACAGAACCATCAAAGAGATGATCATATACTTCTACAAGGTCGTATTCAAACCAAGCAATGATGAAAGATAGTCTACTGAATGCCTATAATTGAATGGTTGCAAGTTAAGACCACCAGACAGAACAATGATAACCACTGGCTACATCTGAAAACATAATAGACAACAAAAAATGGAACTGAAATGATGCCTATGAGAGCTTAGGTAATCTGTGCTGGGCATTTATCCATGTGTTGATGATTGATAAGCTGTACTCCCCCTCCTTTTTGTGGTCTAACATGCTTTATTGTTTCACCATTTTTTAAATAGTTTTACTACTTTTTCATTACATCTTTAGTATGAGTTTCCTCTAACTTTAATCCTCAAAATAAGTTCCTCTATAGTATGGTAGTATCTGTTTGCATGGAGTTGTAAGACGCAACAACAAATTTGACACAGAAGGATAATCGTATATTTTGTTGCAGTAAATTTGGGTGTACATGCATATATGTGATGCCTGCATTAGTTGCTTTGTTGGGAGGCTATTTCAGACTGCAATTCATGAGTGAGATGTAGCAAATGTTTTCAGTCTGCTTGTAATGTGCTTTGTTGCAGGACTTTTTACAAGAGATGTCCGAGAAAGATGAGAAAATCAAGTCCTTAGTCAGCATGGGTTTTCCTGAAGATGAAGTAATGAGGGCTATTATTAGATGCGGTATACCTCTATTGAAGTTGCTGCTTTGACAGTAAGGAGCCTTATACTGCCTATGCTGGGTTAAAATTTGGCAGGTCTGGATGCGTCTGTAGATTTGTTGGTTGAGTCAATCTATGCACCAGCGACTGCAGGAAATGTTTGTTTTACAAACTTATCTGACTATGAAGTATGGGTACCTTGTGATTATAGAGCATCTGAATGGTGAAATTGTTTTCATTTCTTTAATGTAATGCCACTGGCATAATGTTTATTTTTGTGCAGGATACAGAGTTTAGTTCCTTTGGAGGAAGAAAGAAAACAAAATTAATAGATGGAAGCAAGAAAAAAAGAGAACGGTATAGAAGTAGACCACAATGGAATCAAGTGCCATTTGACGGCAGCCATGAAGAGCCAATGCCTCTTCCAAATTCAATGGTGGGATTCAGCTTGCCCAATGACGGGTTAAGGTCAGTCCACAGAAACCTTCCTGACCAGGCTCTTGGACCACCATTCTTTTACTATGAAAACGTGGCCCTAGCTCCAAAAGGTGTATGGACGACCATCTCAAGATTCTTGTATGACATTTATCCTGAGTTCGTATATTCCAAATACTTCTGTGCTGCTGCTAGGAAGAGGGGTTACATCCATAACTTGCCGATTAAGAACAGGTCACCTGTTCTTCCCATTCCCCCAAAGACAATATCTGAAGCCTTTCCTTCTACTAAGATGTGGTGGCCCTTTTGGGATCCAAGAAGGCAGTTCAACTGCTTGCAAACTTGTGTGGCAAGCGCAAAGCATACAGAACGGATACGATGTGCTCTTGGTAGATTCGGCGATGCACTACCTCCAGCAGTTCAGAAGAGTGTCTTGGAAGAATGTAGGAAGTGGAACCTTGTCTAGGTTGGAAAGAACAAGGTTGCTACTCTAGAGCCTGATGAGATGGAATTCCTATTGGGATACCCTAGGATGTTGGATAAGTCTTTGTGGTCCTTGGTCGTGATTCTTCTTTTTGCTTTTGGGTAGTTTCACCTTTTCAGGACAGCATCTACCCTTTAGCATATTTTTCAGTTGCTAGGACAGCTACGGTTAGTAGGACAGCAGCAGTTAGCATCTCCTTTATGCCTCCTTTATGCTTTATTCAGTTTGGATGCCCTCTAGGACAGCATCCCATTCAAATTTCGAATTTTAGACTAGGAGGGTGCAGCAATAGGCTAGTAGCCAGCTATGGCTATATATATGTATCCAACCTCTCTCGGGTAGGTATGGCTTTTGTGTTTTGTGAATGAAGAAAACCAGAAAATTGCCCCATCTCGAGTGCCATCCTCTTCTCAATGAGAGTAACCATTGAAATTCTAACATAGGAATTATACCAGGGGAGTTAGCAGGACAGCGAGATATAGAGCTCTTGGGAATTCATTCCAAGTTGATACAGTTGCCTACCACCTCTCTGTGCTGAGGGACATATTCCCTAATGGCATGAACGTCTTGTCCTTGTTTTCTGGTATTGGTGGAGCAGAAGTAGCTCTCCACAGGCTTGGAATCTGTATGAAGACAGTGGTCTTAGTCGAAATATCAGAGGTAAACATGACGTTGCTGAGGAGTTGGTGGGACCAGACCCAAACTGGCACGCTGATTGAAATCGCAGATGTTCAAAATCTTACTGCTGAAAGAATTGAACTATTCATCAGAAGATTTGGTGGCTTTGACCTGGTGATCGGGGGCAGCCCGTGCAACAACCTCGCTGGTAGCAACAGATACCACCGTGATGGCTTGGAGGGCAAGCACTCAGCACTATTCTATCACTACTACAGAATCTTGGATTCTGTAAAGACTATTATGGCTAGCATGTAAGCTAGCCCATTAACGAACTCTGTGAATTATTGTTGCTAATGAAATTGGAACCTGATGGTTGACCTTCTTTCACAAGGTTTCTCTTGCCATGGCTCAATACGTTCTACTAATTTACCCCAAGTGCAAAATGCTCCTTCCATTTTGATAATGCTTGCAGTTTTGGTGCGAAAGGTATGAAAATTACATCTGACAACATGTCTCTCATTTTTGTACTACTATTATGTATACAAACTGAAGATTGCCATGGAGGAATAGGCTAATGCTATTAAGGGGCTTTGTTTGATTACTACAAGCTGAATTATGAACATGATTTGAGCACCATACGCTAGATTCATCTCTGCTTTTGCTGAAGTTGAAATTCTGCAACCTGAATTGTACCTGCATTTCTATAATAACCTTTATTTATTTTGACTGTGCCTGAATGTCTATAGCTTGCACCTCCAATGCAAGTACATTTCCCTTTTTCCTGTTGATATGCACAATTCACTTGATATATCTTTACTATAACAAAATCTTGAATCTTTGAAGGAAAGTTGTTTCGCCATGTTCGCAAGGCCCTTCTGTTGAAACAATCCTCCTCCTTGACACTGAAAACTGAACAAGATCCTTCCAATAACAGTGATAAGGATTCCATGGACAAATAA More
CDS seq		ATGAGGATAGCGAGTTCGAGTGGGATACTGATGGATGCTAATGGGAAGGCCAATGGATCAGCACCATCAGCTTTGGTTGCTTACTTTTTGGGAATGGGTTTCTCGAGAGAGATGGTCTTCAGAGCTATCAAGGAGATTGGGGACACAGATTCGGAGCAAATTCTTGAGTTACTTCTCACTTATCAGGCGATAGGCAGTGACCCTTCAGTGGGTAACAGCTCTCATTCTGCCTGTGACCCCCAGATTCTTGAAGAAGAAGATGAGGAGGAGGATGTTAATTGGGACGAGGATGATACTGTTGACAATTTTGATAGGGCTACTTACTCTGATGGTTCTGGTGATGAGGACTTTTTACAAGAGATGTCCGAGAAAGATGAGAAAATCAAGTCCTTAGTCAGCATGGGTTTTCCTGAAGATGAAGATACAGAGTTTAGTTCCTTTGGAGGAAGAAAGAAAACAAAATTAATAGATGGAAGCAAGAAAAAAAGAGAACGGTATAGAAGTAGACCACAATGGAATCAAGTGCCATTTGACGGCAGCCATGAAGAGCCAATGCCTCTTCCAAATTCAATGGTGGGATTCAGCTTGCCCAATGACGGGTTAAGGTCAGTCCACAGAAACCTTCCTGACCAGGCTCTTGGACCACCATTCTTTTACTATGAAAACGTGGCCCTAGCTCCAAAAGGTGTATGGACGACCATCTCAAGATTCTTGTATGACATTTATCCTGAGTTCGTATATTCCAAATACTTCTGTGCTGCTGCTAGGAAGAGGGGTTACATCCATAACTTGCCGATTAAGAACAGGAATTATACCAGGGGAGTTAGCAGGACAGCGAGATATAGAGCTCTTGGGAATTCATTCCAAGTTGATACAGTTGCCTACCACCTCTCTGTGCTGAGGGACATATTCCCTAATGGCATGAACGTCTTGTCCTTGTTTTCTGGTATTGGTGGAGCAGAAGTAGCTCTCCACAGGCTTGGAATCTGTATGAAGACAGTGGTCTTAGTCGAAATATCAGAGGTAAACATGACGTTGCTGAGGAGTTGGTGGGACCAGACCCAAACTGGCACGCTGATTGAAATCGCAGATGTTCAAAATCTTACTGCTGAAAGAATTGAACTATTCATCAGAAGATTTGGTGGCTTTGACCTGGTGATCGGGGGCAGCCCGTGCAACAACCTCGCTGGTAGCAACAGATACCACCGTGATGGCTTGGAGGGCAAGCACTCAGCACTATTCTATCACTACTACAGAATCTTGGATTCTGTAAAGACTATTATGGCTAGCATTTTTGGTGCGAAAGGAAAGTTGTTTCGCCATGTTCGCAAGGCCCTTCTGTTGAAACAATCCTCCTCCTTGACACTGAAAACTGAACAAGATCCTTCCAATAACAGTGATAAGGATTCCATGGACAAATAA More
Protein seq		MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGDTDSEQILELLLTYQAIGSDPSVGNSSHSACDPQILEEEDEEEDVNWDEDDTVDNFDRATYSDGSGDEDFLQEMSEKDEKIKSLVSMGFPEDEDTEFSSFGGRKKTKLIDGSKKKRERYRSRPQWNQVPFDGSHEEPMPLPNSMVGFSLPNDGLRSVHRNLPDQALGPPFFYYENVALAPKGVWTTISRFLYDIYPEFVYSKYFCAAARKRGYIHNLPIKNRNYTRGVSRTARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEVALHRLGICMKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADVQNLTAERIELFIRRFGGFDLVIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTIMASIFGAKGKLFRHVRKALLLKQSSSLTLKTEQDPSNNSDKDSMDK
Function		DNA (cytosine-5)-methyltransferase DRM1A [UniProtKB/Swiss-Prot:Q2RBJ4]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os11g01810	LOC_Os11g01810.1	Chr11	428373	432588	+	MSU_osa1r7
CDS seq	ATGAGGATAGCGAGTTCGAGTGGGATACTGATGGATGCTAATGGGAAGGCCAATGGATCAGCACCATCAGCTTTGGTTGCTTACTTTTTGGGAATGGGTTTCTCGAGAGAGATGGTCTTCAGAGCTATCAAGGAGATTGGGGACACAGATTCGGAGCAAATTCTTGAGTTACTTCTCACTTATCAGGCGATAGGCAGTGACCCTTCAGTGGGTAACAGCTCTCATTCTGCCTGTGACCCCCAGATTCTTGAAGAAGAAGATGAGGAGGAGGATGTTAATTGGGACGAGGATGATACTGTTGACAATTTTGATAGGGCTACTTACTCTGATGGTTCTGGTGATGAGGACTTTTTACAAGAGATGTCCGAGAAAGATGAGAAAATCAAGTCCTTAGTCAGCATGGGTTTTCCTGAAGATGAAGATACAGAGTTTAGTTCCTTTGGAGGAAGAAAGAAAACAAAATTAATAGATGGAAGCAAGAAAAAAAGAGAACGGTATAGAAGTAGACCACAATGGAATCAAGTGCCATTTGACGGCAGCCATGAAGAGCCAATGCCTCTTCCAAATTCAATGGTGGGATTCAGCTTGCCCAATGACGGGTTAAGGTCAGTCCACAGAAACCTTCCTGACCAGGCTCTTGGACCACCATTCTTTTACTATGAAAACGTGGCCCTAGCTCCAAAAGGTGTATGGACGACCATCTCAAGATTCTTGTATGACATTTATCCTGAGTTCGTATATTCCAAATACTTCTGTGCTGCTGCTAGGAAGAGGGGTTACATCCATAACTTGCCGATTAAGAACAGGAATTATACCAGGGGAGTTAGCAGGACAGCGAGATATAGAGCTCTTGGGAATTCATTCCAAGTTGATACAGTTGCCTACCACCTCTCTGTGCTGAGGGACATATTCCCTAATGGCATGAACGTCTTGTCCTTGTTTTCTGGTATTGGTGGAGCAGAAGTAGCTCTCCACAGGCTTGGAATCTGTATGAAGACAGTGGTCTTAGTCGAAATATCAGAGGTAAACATGACGTTGCTGAGGAGTTGGTGGGACCAGACCCAAACTGGCACGCTGATTGAAATCGCAGATGTTCAAAATCTTACTGCTGAAAGAATTGAACTATTCATCAGAAGATTTGGTGGCTTTGACCTGGTGATCGGGGGCAGCCCGTGCAACAACCTCGCTGGTAGCAACAGATACCACCGTGATGGCTTGGAGGGCAAGCACTCAGCACTATTCTATCACTACTACAGAATCTTGGATTCTGTAAAGACTATTATGGCTAGCATTTTTGGTGCGAAAGGAAAGTTGTTTCGCCATGTTCGCAAGGCCCTTCTGTTGAAACAATCCTCCTCCTTGACACTGAAAACTGAACAAGATCCTTCCAATAACAGTGATAAGGATTCCATGGACAAATAA More
Protein seq	MRIASSSGILMDANGKANGSAPSALVAYFLGMGFSREMVFRAIKEIGDTDSEQILELLLTYQAIGSDPSVGNSSHSACDPQILEEEDEEEDVNWDEDDTVDNFDRATYSDGSGDEDFLQEMSEKDEKIKSLVSMGFPEDEDTEFSSFGGRKKTKLIDGSKKKRERYRSRPQWNQVPFDGSHEEPMPLPNSMVGFSLPNDGLRSVHRNLPDQALGPPFFYYENVALAPKGVWTTISRFLYDIYPEFVYSKYFCAAARKRGYIHNLPIKNRNYTRGVSRTARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEVALHRLGICMKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADVQNLTAERIELFIRRFGGFDLVIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTIMASIFGAKGKLFRHVRKALLLKQSSSLTLKTEQDPSNNSDKDSMDK More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_11g0109200	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os12g01800	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os11g0109200	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_11g0000640	SBH	0.0	0.0	0.440392
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_11g0000670	SBH	0.0	0.0	0.402789
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_11g0000650	SBH	0.0	0.0	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_11g0000660	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_11g0000660	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_11G0008200	RBH	0	0	0.0035705
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_11g0000650	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_11G0009400	RBH	0	0	0.0045995
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_11g0000530	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_11g0000660	SBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_11g0000660	SBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_11g0000670	SBH	0.0	0.0	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_11g0000680	SBH	0.0	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_11G000660	SBH	0.0	0.0	0.116823
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_11g0000640	SBH	0.0	0.0	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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