Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0109200 | OGI:11001580 | 7/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:430444-431916 | ||||||||
| Gene Symbol | DRM1A, OsDRM1a | ||||||||||
| DNA seq | AGAACGGTATAGAAGTAGACCACAATGGAATCAAGTGCCATTTGACGGCAGCCATGAAGAGCCAATGCCTCTTCCAAATTCAATGGTGGGATTCAGCTTGCCCAATGACGGGTTAAGGTCAGTCCACAGAAACCTTCCTGACCAGGCTCTTGGACCACCATTCTTTTACTATGAAAACGTGGCCCTAGCTCCAAAAGGTGTATGGACGACCATCTCAAGATTCTTGTATGACATTTATCCTGAGTTCGTATATTCCAAATACTTCTGTGCTGCTGCTAGGAAGAGGGGTTACATCCATAACTTGCCGATTAAGAACAGGTCACCTGTTCTTCCCATTCCCCCAAAGACAATATCTGAAGCCTTTCCTTCTACTAAGATGTGGTGGCCCTTTTGGGATCCAAGAAGGCAGTTCAACTGCTTGCAAACTTGTGTGGCAAGCGCAAAGCATACAGAACGGATACGATGTGCTCTTGGTAGATTCGGCGATGCACTACCTCCAGCAGTTCAGAAGAGTGTCTTGGAAGAATGTAGGAAGTGGAACCTTGTCTAGGTTGGAAAGAACAAGGTTGCTACTCTAGAGCCTGATGAGATGGAATTCCTATTGGGATACCCTAGGATGTTGGATAAGTCTTTGTGGTCCTTGGTCGTGATTCTTCTTTTTGCTTTTGGGTAGTTTCACCTTTTCAGGACAGCATCTACCCTTTAGCATATTTTTCAGTTGCTAGGACAGCTACGGTTAGTAGGACAGCAGCAGTTAGCATCTCCTTTATGCCTCCTTTATGCTTTATTCAGTTTGGATGCCCTCTAGGACAGCATCCCATTCAAATTTCGAATTTTAGACTAGGAGGGTGCAGCAATAGGCTAGTAGCCAGCTATGGCTATATATATGTATCCAACCTCTCTCGGGTAGGTATGGCTTTTGTGTTTTGTGAATGAAGAAAACCAGAAAATTGCCCCATCTCGAGTGCCATCCTCTTCTCAATGAGAGTAACCATTGAAATTCTAACATAGGAATTATACCAGGGGAGTTAGCAGGACAGCGAGATATAGAGCTCTTGGGAATTCATTCCAAGTTGATACAGTTGCCTACCACCTCTCTGTGCTGAGGGACATATTCCCTAATGGCATGAACGTCTTGTCCTTGTTTTCTGGTATTGGTGGAGCAGAAGTAGCTCTCCACAGGCTTGGAATCTGTATGAAGACAGTGGTCTTAGTCGAAATATCAGAGGTAAACATGACGTTGCTGAGGAGTTGGTGGGACCAGACCCAAACTGGCACGCTGATTGAAATCGCAGATGTTCAAAATCTTACTGCTGAAAGAATTGAACTATTCATCAGAAGATTTGGTGGCTTTGACCTGGTGATCGGGGGCAGCCCGTGCAACAACCTCGCTGGTAGCAACAGATACCACCGTGATGGCTTGGAGGGCAAGCACTCAGCACTATTCTATCACTACTACAGAATCTTGGATTC
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| CDS seq | ATGCCTCTTCCAAATTCAATGGTGGGATTCAGCTTGCCCAATGACGGGTTAAGGGGAGTTAGCAGGACAGCGAGATATAGAGCTCTTGGGAATTCATTCCAAGTTGATACAGTTGCCTACCACCTCTCTGTGCTGAGGGACATATTCCCTAATGGCATGAACGTCTTGTCCTTGTTTTCTGGTATTGGTGGAGCAGAAGTAGCTCTCCACAGGCTTGGAATCTGTATGAAGACAGTGGTCTTAGTCGAAATATCAGAGGTAAACATGACGTTGCTGAGGAGTTGGTGGGACCAGACCCAAACTGGCACGCTGATTGAAATCGCAGATGTTCAAAATCTTACTGCTGAAAGAATTGAACTATTCATCAGAAGATTTGGTGGCTTTGACCTGGTGATCGGGGGCAGCCCGTGCAACAACCTCGCTGGTAGCAACAGATACCACCGTGATGGCTTGGAGGGCAAGCACTCAGCACTATTCTATCACTACTACAGAATCTTGGATTC
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| Protein seq | MPLPNSMVGFSLPNDGLRGVSRTARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEVALHRLGICMKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADVQNLTAERIELFIRRFGGFDLVIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRILD |
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| Function | DNA (cytosine-5)-methyltransferase DRM1A [UniProtKB/Swiss-Prot:Q2RBJ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0109200 | OsNip_11t0109200-00 | Chr11 | 430444 | 431916 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCTCTTCCAAATTCAATGGTGGGATTCAGCTTGCCCAATGACGGGTTAAGGGGAGTTAGCAGGACAGCGAGATATAGAGCTCTTGGGAATTCATTCCAAGTTGATACAGTTGCCTACCACCTCTCTGTGCTGAGGGACATATTCCCTAATGGCATGAACGTCTTGTCCTTGTTTTCTGGTATTGGTGGAGCAGAAGTAGCTCTCCACAGGCTTGGAATCTGTATGAAGACAGTGGTCTTAGTCGAAATATCAGAGGTAAACATGACGTTGCTGAGGAGTTGGTGGGACCAGACCCAAACTGGCACGCTGATTGAAATCGCAGATGTTCAAAATCTTACTGCTGAAAGAATTGAACTATTCATCAGAAGATTTGGTGGCTTTGACCTGGTGATCGGGGGCAGCCCGTGCAACAACCTCGCTGGTAGCAACAGATACCACCGTGATGGCTTGGAGGGCAAGCACTCAGCACTATTCTATCACTACTACAGAATCTTGGATTC
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| Protein seq | MPLPNSMVGFSLPNDGLRGVSRTARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEVALHRLGICMKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADVQNLTAERIELFIRRFGGFDLVIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRILD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0108900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01810 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0109200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000640 | SBH | 0.0 | 0.0 | 0.440392 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000670 | SBH | 0.0 | 0.0 | 0.402789 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000650 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000660 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000660 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0009900 | SBH | 10.945686 | 21.9348765 | 27.3716335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000650 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0009400 | RBH | 0 | 0 | 0.0045995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000660 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000660 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000670 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000680 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000660 | SBH | 0.0 | 0.0 | 0.116823 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000640 | SBH | 0.0 | 0.0 | 0.000000 |
