Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_03G0539700 | OGI:03088610 | 21/50 | Minghui 63 | MH63RS3 | HZAU | Chr03:34798682-34800192 | ||||||||
| Gene Symbol | ZFP1,OsDLN99,OsWZF1,DLN99,WZF1,OsZFP1 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | AACCTGTCATACACACACAACTTTTCATTTCAGTCACATCATTTTTAATTTCAACCAAAATCCAAACTTTACGCTGAACTAAACACAATCCCAAGTATGGTCTAATATGGTCTACAATATATGACTGTCAAAGAACAAAGTGTAAAAGATACAGGTACAGTTCCAGTGTTACAAAGAACCAAGGAAGAGCTAGACCTATATCTGTATGACTGTATGTATGGCTATGTATCACTCGCTTGCTCTGTACAAAAGCAGGAACAAATTAAACAATAGCGGCACAAAACGAATCAACGAATAGTGTGTTTCGACTGAATTTCACTCCCTAGACAAAAACTCTGACGGATCGGATCCGTGCAGCTGCTGAATTACGCGGTGAGAAGCCGGGGCTTCTTGAAGGCGAGGGGGCTCTGGACCTCCTCCTCCTCGTCCCACATCTTCTTGCCCTTGGAGCACGGCCGCCACACGAACTCCGGCACGGCCGGGAGGTTGAGGTCGAACGCCCGGGTGGCGGACTGGCCGTTGCCGGAGCTTCCCACCTCGGACTCGGCGGCCACCGTGGCCAGGAGCTCGGTTGAAGATGCGCCGGCGCCGGCGCCTACGCCACCGTCGTAGTGCTTCCTCTTGTGCCCGCCGAGCGCCTGCCCGGTGGGGAACTCCTTCTGGCAGATGGAACACCTGTGGACTCTGTTGGTCATGCCGTCGGAGGACGCGGCGGTGGATGACGTGGCTGGCTCGCGGTCCTCGGCGGAAGGCAGCAAGGCGGCGACGGGGGCGGGAGCCAAGACGGGAGCTGCGGGCGGAGTCGGCAGCTTGACCCGGTGGCTCGTCTTGTGGCCGCCGAGCGCCTGGTAGGAGCTGAAGGACTTGCCGCAGACGGAGCACTTGAACTCCGCACCTGCCGGCGGGGGCGCCGAAGCCGAGAGCGGAGGCGGCGCCTGGACGCGGTGGTGGCCGCCGCGGGCGAGCATGAGGAGGCAGAGCGCGAGGTTCTCCTCCTCCGATCGCTGGCGGCGCGACCGCTTCCGCTTCGCCCACCCCTGGGGCAGGTGTCCGCCCTCCTCCCCGCTCGTGGCGCTGCTGCTCGTCACGACCGTCGCCTCCTCCACCTCGTGCTGCTGCTGCTCCTCCTTGAGCACCGCGGCGTGGAGCGCTTCCATGGACGACGCGCTCGACATGCTTCCACCGCAATTCACAAAAGCAGCAAGCAGATCGACGACTTGTTCTATCCGCTAGCTAAGCTTCGCTCGCTCGCCTCAAGCTAGTGTGGCAGCTGGCTGGTTGCTGTGTGGTGTGGTGTGGTGTGCGGAGTGGAGGGAGTGAGATGTGAGGTAGTTTTAAAGCAGTGGGGAGGGGTGAGGCGCGAGCGAGAGTGTGCGGAGGAGAAGAGAAGAGAAGACGTGGGAAGTTGCGTCGTAGGTGGGGGCAAGGCAAGCGAGGTGGTTGCGGCGTGGGCGCGCACGCGGCGGGGCGCGAGAGGGTGACGGGTGGGGGCGTGTCGTCGTGGGGACGGG
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| CDS seq | ATGTCGAGCGCGTCGTCCATGGAAGCGCTCCACGCCGCGGTGCTCAAGGAGGAGCAGCAGCAGCACGAGGTGGAGGAGGCGACGGTCGTGACGAGCAGCAGCGCCACGAGCGGGGAGGAGGGCGGACACCTGCCCCAGGGGTGGGCGAAGCGGAAGCGGTCGCGCCGCCAGCGATCGGAGGAGGAGAACCTCGCGCTCTGCCTCCTCATGCTCGCCCGCGGCGGCCACCACCGCGTCCAGGCGCCGCCTCCGCTCTCGGCTTCGGCGCCCCCGCCGGCAGGTGCGGAGTTCAAGTGCTCCGTCTGCGGCAAGTCCTTCAGCTCCTACCAGGCGCTCGGCGGCCACAAGACGAGCCACCGGGTCAAGCTGCCGACTCCGCCCGCAGCTCCCGTCTTGGCTCCCGCCCCCGTCGCCGCCTTGCTGCCTTCCGCCGAGGACCGCGAGCCAGCCACGTCATCCACCGCCGCGTCCTCCGACGGCATGACCAACAGAGTCCACAGGTGTTCCATCTGCCAGAAGGAGTTCCCCACCGGGCAGGCGCTCGGCGGGCACAAGAGGAAGCACTACGACGGTGGCGTAGGCGCCGGCGCCGGCGCATCTTCAACCGAGCTCCTGGCCACGGTGGCCGCCGAGTCCGAGGTGGGAAGCTCCGGCAACGGCCAGTCCGCCACCCGGGCGTTCGACCTCAACCTCCCGGCCGTGCCGGAGTTCGTGTGGCGGCCGTGCTCCAAGGGCAAGAAGATGTGGGACGAGGAGGAGGAGGTCCAGAGCCCCCTCGCCTTCAAGAAGCCCCGGCTTCTCACCGCGTAA
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| Protein seq | MSSASSMEALHAAVLKEEQQQHEVEEATVVTSSSATSGEEGGHLPQGWAKRKRSRRQRSEEENLALCLLMLARGGHHRVQAPPPLSASAPPPAGAEFKCSVCGKSFSSYQALGGHKTSHRVKLPTPPAAPVLAPAPVAALLPSAEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAGAGASSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFVWRPCSKGKKMWDEEEEVQSPLAFKKPRLLTA |
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| Function | Zinc finger protein 1 [UniProtKB/Swiss-Prot:Q42430] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_03G0539700 | OsMH63_03T0539700.1 | Chr03 | 34798682 | 34800192 | - | maker | ||
| CDS seq | ATGTCGAGCGCGTCGTCCATGGAAGCGCTCCACGCCGCGGTGCTCAAGGAGGAGCAGCAGCAGCACGAGGTGGAGGAGGCGACGGTCGTGACGAGCAGCAGCGCCACGAGCGGGGAGGAGGGCGGACACCTGCCCCAGGGGTGGGCGAAGCGGAAGCGGTCGCGCCGCCAGCGATCGGAGGAGGAGAACCTCGCGCTCTGCCTCCTCATGCTCGCCCGCGGCGGCCACCACCGCGTCCAGGCGCCGCCTCCGCTCTCGGCTTCGGCGCCCCCGCCGGCAGGTGCGGAGTTCAAGTGCTCCGTCTGCGGCAAGTCCTTCAGCTCCTACCAGGCGCTCGGCGGCCACAAGACGAGCCACCGGGTCAAGCTGCCGACTCCGCCCGCAGCTCCCGTCTTGGCTCCCGCCCCCGTCGCCGCCTTGCTGCCTTCCGCCGAGGACCGCGAGCCAGCCACGTCATCCACCGCCGCGTCCTCCGACGGCATGACCAACAGAGTCCACAGGTGTTCCATCTGCCAGAAGGAGTTCCCCACCGGGCAGGCGCTCGGCGGGCACAAGAGGAAGCACTACGACGGTGGCGTAGGCGCCGGCGCCGGCGCATCTTCAACCGAGCTCCTGGCCACGGTGGCCGCCGAGTCCGAGGTGGGAAGCTCCGGCAACGGCCAGTCCGCCACCCGGGCGTTCGACCTCAACCTCCCGGCCGTGCCGGAGTTCGTGTGGCGGCCGTGCTCCAAGGGCAAGAAGATGTGGGACGAGGAGGAGGAGGTCCAGAGCCCCCTCGCCTTCAAGAAGCCCCGGCTTCTCACCGCGTAA
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| Protein seq | MSSASSMEALHAAVLKEEQQQHEVEEATVVTSSSATSGEEGGHLPQGWAKRKRSRRQRSEEENLALCLLMLARGGHHRVQAPPPLSASAPPPAGAEFKCSVCGKSFSSYQALGGHKTSHRVKLPTPPAAPVLAPAPVAALLPSAEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAGAGASSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFVWRPCSKGKKMWDEEEEVQSPLAFKKPRLLTA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 29.777667 | 563.373596 | 25.0890935 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0764100 | RBH | 5.068039 | 4.432840 | 1.931051 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g55540 | RBH | 3.291248 | 2.863125 | 0.477361 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0764100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035770 | RBH | 0.0 | 8.903729 | 2.929665 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035440 | RBH | 0.294091 | 7.856066 | 0.855577 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035530 | RBH | 0.996826 | 4.183319 | 0.776805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035830 | RBH | 0.014285 | 0.420781 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035350 | RBH | 3.264776 | 12.018387 | 4.743789 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035140 | RBH | 0.253933 | 1.339597 | 0.510876 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0539600 | RBH | 44.01058 | 626.3011475 | 1.5186145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035620 | RBH | 0.0 | 0.149514 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035640 | RBH | 0.222949 | 16.524199 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035300 | RBH | 5.633644 | 37.737831 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035360 | RBH | 0.749750 | 0.236170 | 2.878795 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035320 | RBH | 0.054540 | 2.397035 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035140 | RBH | 0.096780 | 0.879900 | 0.718041 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034950 | RBH | 0.367188 | 11.699813 | 3.943505 |
| Os XI: R9311 | R9311 | AGIS | R9311C03g14212 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_03g0414200 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_03g0411200 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_03g0389100 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_03g0423600 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_009193 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: DHX2 | DHX2 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: G46 | G46 | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | NA | NA | NA | NA | NA |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0307285000.01 | SBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | NA | NA | NA | NA | NA |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0380001024.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: YX1 | YX1 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
