Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0035620 | OGI:03088610 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:34746689-34747498 | ||||||||
| Gene Symbol | WZF1, OsWZF1, DLN99, OsDLN99, OsZFP1, ZFP1 | ||||||||||
| DNA seq | ttacgcggtgagaagccggggcttcttgaaggcgagggggctctggacctcctcctcctcgtcccacatcttcttgcccttggagcacggccgccacacgaactccggcacggccgggaggttgaggtcgaacgcccgggtggcggactggccgttgccggagcttcccacctcggactcggcggccaccgtggccaggagctcggttgaagatgcgccggcgccggcgcctacgccaccgtcgtagtgcttcctcttgtgcccgccgagcgcctgcccggtggggaactccttctggcagatggaacacctgtggactctgttggtcatgccgtcggaggacgcggcggtggatgacgtggctggctcgcggtcctcggcggaaggcagcaaggcggcgacgggggcgggagccaagacgggagctgcgggcggagtcggcagcttgacccggtggctcgtcttgtggccgccgagcgcctggtaggagctgaaggacttgccgcagacggagcacttgaactccgcacctgccggcgggggcgccgaagccgagagcggaggcggcgcctggacgcggtggtggccgccgcgggcgagcatgaggaggcagagcgcgaggttctcctcctccgatcgctggcggcgcgaccgcttccgcttcgcccacccctgcggcaggtgtccgccctcctccccgctcgtggcgctgctgctcgtcacgaccgtcgcctcctccacctcgtgctgctgctgctcctccttgagcaccgcggcgtggagcgcttccatggacgacgcgctcgacat
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| CDS seq | atgtcgagcgcgtcgtccatggaagcgctccacgccgcggtgctcaaggaggagcagcagcagcacgaggtggaggaggcgacggtcgtgacgagcagcagcgccacgagcggggaggagggcggacacctgccgcaggggtgggcgaagcggaagcggtcgcgccgccagcgatcggaggaggagaacctcgcgctctgcctcctcatgctcgcccgcggcggccaccaccgcgtccaggcgccgcctccgctctcggcttcggcgcccccgccggcaggtgcggagttcaagtgctccgtctgcggcaagtccttcagctcctaccaggcgctcggcggccacaagacgagccaccgggtcaagctgccgactccgcccgcagctcccgtcttggctcccgcccccgtcgccgccttgctgccttccgccgaggaccgcgagccagccacgtcatccaccgccgcgtcctccgacggcatgaccaacagagtccacaggtgttccatctgccagaaggagttccccaccgggcaggcgctcggcgggcacaagaggaagcactacgacggtggcgtaggcgccggcgccggcgcatcttcaaccgagctcctggccacggtggccgccgagtccgaggtgggaagctccggcaacggccagtccgccacccgggcgttcgacctcaacctcccggccgtgccggagttcgtgtggcggccgtgctccaagggcaagaagatgtgggacgaggaggaggaggtccagagccccctcgccttcaagaagccccggcttctcaccgcgtaa
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| Protein seq | MSSASSMEALHAAVLKEEQQQHEVEEATVVTSSSATSGEEGGHLPQGWAKRKRSRRQRSEEENLALCLLMLARGGHHRVQAPPPLSASAPPPAGAEFKCSVCGKSFSSYQALGGHKTSHRVKLPTPPAAPVLAPAPVAALLPSAEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAGAGASSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFVWRPCSKGKKMWDEEEEVQSPLAFKKPRLLTA |
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| Function | Zinc finger protein 1 [UniProtKB/Swiss-Prot:Q42430] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0035620 | OsLima_03g0035620.01 | Chr03 | 34746689 | 34747498 | - | NAM | ||
| CDS seq | atgtcgagcgcgtcgtccatggaagcgctccacgccgcggtgctcaaggaggagcagcagcagcacgaggtggaggaggcgacggtcgtgacgagcagcagcgccacgagcggggaggagggcggacacctgccgcaggggtgggcgaagcggaagcggtcgcgccgccagcgatcggaggaggagaacctcgcgctctgcctcctcatgctcgcccgcggcggccaccaccgcgtccaggcgccgcctccgctctcggcttcggcgcccccgccggcaggtgcggagttcaagtgctccgtctgcggcaagtccttcagctcctaccaggcgctcggcggccacaagacgagccaccgggtcaagctgccgactccgcccgcagctcccgtcttggctcccgcccccgtcgccgccttgctgccttccgccgaggaccgcgagccagccacgtcatccaccgccgcgtcctccgacggcatgaccaacagagtccacaggtgttccatctgccagaaggagttccccaccgggcaggcgctcggcgggcacaagaggaagcactacgacggtggcgtaggcgccggcgccggcgcatcttcaaccgagctcctggccacggtggccgccgagtccgaggtgggaagctccggcaacggccagtccgccacccgggcgttcgacctcaacctcccggccgtgccggagttcgtgtggcggccgtgctccaagggcaagaagatgtgggacgaggaggaggaggtccagagccccctcgccttcaagaagccccggcttctcaccgcgtaa
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| Protein seq | MSSASSMEALHAAVLKEEQQQHEVEEATVVTSSSATSGEEGGHLPQGWAKRKRSRRQRSEEENLALCLLMLARGGHHRVQAPPPLSASAPPPAGAEFKCSVCGKSFSSYQALGGHKTSHRVKLPTPPAAPVLAPAPVAALLPSAEDREPATSSTAASSDGMTNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAGAGASSTELLATVAAESEVGSSGNGQSATRAFDLNLPAVPEFVWRPCSKGKKMWDEEEEVQSPLAFKKPRLLTA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.149514 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0764100 | RBH | 5.068039 | 4.432840 | 1.931051 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g55540 | RBH | 3.291248 | 2.863125 | 0.477361 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0764100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035770 | RBH | 0.0 | 8.903729 | 2.929665 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035440 | RBH | 0.294091 | 7.856066 | 0.855577 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035530 | RBH | 0.996826 | 4.183319 | 0.776805 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035830 | RBH | 0.014285 | 0.420781 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035350 | RBH | 3.264776 | 12.018387 | 4.743789 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0539700 | RBH | 29.777667 | 563.373596 | 25.0890935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035140 | RBH | 0.253933 | 1.339597 | 0.510876 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0539600 | RBH | 44.01058 | 626.3011475 | 1.5186145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035640 | RBH | 0.222949 | 16.524199 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035300 | RBH | 5.633644 | 37.737831 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035360 | RBH | 0.749750 | 0.236170 | 2.878795 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035320 | RBH | 0.054540 | 2.397035 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035140 | RBH | 0.096780 | 0.879900 | 0.718041 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034950 | RBH | 0.367188 | 11.699813 | 3.943505 |
