Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0241900 | OGI:08044700 | 48/50 | Minghui 63 | MH63RS3 | HZAU | Chr08:16770181-16770802 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | AGCCCCCCTGTCGCGACGCGCCCGTCCGCGAGCGCGTGCCACCGAATCTCTAATCCGCCAAAAAACCCACCACAGAAAAAAAAAAAAAGGTTCTCGACTCTCCTCTCGTCTCGAGAGCAGCAACAGCAGCAGAAGAAGAGAAGAGCAAGAGGAGGAGGAGGAGATGTTCCCCGGCCTGATCCACCACCACCGCCTCCTCGACGCCGATGTCGGCGGCGGCGGCGGGGGGAGCAGCGCCGGCCTGGTACTGACGGCCGACCCCAAGCCCCGCCTGCGGTGGACGGCCGACCTCCACGACCGCTTCGTCGACGCCGTCGCCCAGCTCGGCGGGCCCGACAGTGAGCTCCTCCCTCCTCCTCTTCCCTCCTCCGCTTTCATCTCCTCTTCACCTCACACCCTGTTTTGTGCTTGTGTTTCCTTTGGCTTTGGCTTTGGCTTGGCTGTGCGCCGGATTGGCACACGATTCATGGCGATTTTGGTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGTTTGAAACTTAGTCGACCAGGCGAGGATGGATTTGGTTAGAGGTTGATCTGTTGTAGCTAGCAGCTCGATTCGAGCGGAAGAATGAATGCGGCGGGAATTCAACTTAG
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| CDS seq | ATGTTCCCCGGCCTGATCCACCACCACCGCCTCCTCGACGCCGATGTCGGCGGCGGCGGCGGGGGGAGCAGCGCCGGCCTGGTACTGACGGCCGACCCCAAGCCCCGCCTGCGGTGGACGGCCGACCTCCACGACCGCTTCGTCGACGCCGTCGCCCAGCTCGGCGGGCCCGACACTCGATTCGAGCGGAAGAATGAATGCGGCGGGAATTCAACTTAG |
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| Protein seq | MFPGLIHHHRLLDADVGGGGGGSSAGLVLTADPKPRLRWTADLHDRFVDAVAQLGGPDTRFERKNECGGNST |
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| Function | Myb family transcription factor PHL12 [UniProtKB/Swiss-Prot:Q8VYI2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0241900 | OsMH63_08T0241900-mRNA-1 | Chr08 | 16770181 | 16770802 | + | maker | ||
| CDS seq | ATGTTCCCCGGCCTGATCCACCACCACCGCCTCCTCGACGCCGATGTCGGCGGCGGCGGCGGGGGGAGCAGCGCCGGCCTGGTACTGACGGCCGACCCCAAGCCCCGCCTGCGGTGGACGGCCGACCTCCACGACCGCTTCGTCGACGCCGTCGCCCAGCTCGGCGGGCCCGACACTCGATTCGAGCGGAAGAATGAATGCGGCGGGAATTCAACTTAG
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| Protein seq | MFPGLIHHHRLLDADVGGGGGGSSAGLVLTADPKPRLRWTADLHDRFVDAVAQLGGPDTRFERKNECGGNST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.9542405 | 10.899655 | 29.1438265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0346400 | RBH | 3.125450 | 2.365536 | 11.700198 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g25799 | RBH | 1.814885 | 1.264258 | 2.507145 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0346400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0012600 | RBH | 1.636645 | 10.547158 | 4.927530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012730 | RBH | 0.803103 | 0.380558 | 2.305140 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012780 | RBH | 2.008871 | 8.890606 | 9.443140 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0012710 | RBH | 0.199663 | 0.048185 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012530 | RBH | 17.702915 | 13.892149 | 9.366601 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0128800 | SBH | 16.557871 | 17.109821 | 41.928934 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012630 | RBH | 0.574789 | 0.226319 | 0.837774 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0256800 | SBH | 6.9129 | 10.636846 | 32.9788035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012120 | RBH | 0.366347 | 0.068665 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012300 | RBH | 0.932224 | 4.856739 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012180 | RBH | 6.575727 | 10.151031 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012970 | RBH | 0.517470 | 0.575999 | 0.370707 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012200 | RBH | 0.237653 | 3.293985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012390 | RBH | 0.950975 | 3.456195 | 3.590489 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0012350 | SBH | 1.210180 | 5.455512 | 5.853301 |
| Os XI: R9311 | R9311 | AGIS | R9311C08g29264 | SBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_08g0152900 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_08g0163800 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_08g0144000 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_08g0155300 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0814028900.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0828025100.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | NA | NA | NA | NA | NA |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0825094100.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0827087500.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0818616500.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0822081300.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0823006500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0817740100.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0815110500.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0813526900.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0818833900.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0826836300.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0818569700.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0822658100.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0816458900.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0814095300.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0814546700.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0821821300.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0815852300.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0817301700.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0833950300.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0822502400.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0818131100.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0813582100.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0819127100.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0820163200.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0822798300.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0820061900.01 | RBH | None | None | None |
