Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0012120 | OGI:08044700 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:15107511-15115974 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caccgaatctctaatccgccaaaaaacccaccacagaaaaaaaaaaaaaaggttctcgactctcctctcgtctcgagagcagcaacagcagcagaagaagagaagagcaagaggaggaggaggagatgttccccggcctgatccaccaccaccgcctccttgacgccgatgtcggcggcggcggcggggggagcagcgccggcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgaccgcttcgtcgacgccgtcgcccagctcggcgggcccgacagtgagctcctccctcctcctcttccctcctccgctttcatctcctcttcacctcacaccctgttttgtgcttgtgtttcctttggctttggctttggcttggctgtgcgccggattggcacacgattcatggcgattttggttttttggggggggggggggggggggggggggagggtttgaaacttagtcgaccaggcgaggatggatttggttagaggttaatctgttgtagctagcagctcgattcgagcggaagaatgaatgcggcgggaattcaacttagagaatccgagcaTttttttttcctcatgctgcttctttcacatgaatcgttgagttgaccccaagtttgccgccaaattaatcgctgagaatgtgcggctcgcttttatgaccttctctatggcgccatttcttcacgcttctggtgctaccatctggtatcatatatactctcatctcattggtgtggaaatgggaacttctgtgcaacgaatttgttggtttgattcttgaaacgcgtaactgtcagttcagtcattggatagatagggcgtgtgttgatgtaaaggtaatcgaatcttttgatgcaagtaagttcagttcggagcaatttggggattttattccctgaaaaggcactttacctgttgtgctttattacgttgttaggtagctttatgttgagaTtactctcttagggcatctacaatgtgagccactcctagagtgtcctcactaactgagggcatccatggagtggctctggagaaccgtcctcacagtggaaggtacccctgcctagtagcttaaaaatctgaggaaatttgggggcactggttgaagagacgcagaccacagtgggtgtctcggaccaagtagccatgcgcacaaatgtcgtccgtgcccctccatggccgcccgtctgtttcgtgttgaagctttgtagcccatcaagcacgtacggttgtttgtctgttcaataagtcgcttcaatattgtttcaagcaaactaaatcagcacatacaatgattaatgattaacgattctatttaacgcaattctgagtaaatcaaacaaaagatgtggccttcagaagaagctcaccgatttcagattattgtttagtttcagcaggtcgtcggagacaacctccaaaagtgaagaaacagaaattcgctcagggatcattgttgttgtcgtcgcattagaaatcgcctctgctggcacatcaattgcagcaaggcctgcacaaaaacgctaagtcgttagctcactccaaaacacagctgctcaacagaccaataagaacaagagctgcaggatgaagaacctggctggctcggtgaggccacgaaacaaacacatggcatgcaccgcctcggggccacccgcatgctagaccggccggcccaactgcaccggcaggaggccatctgaccgaaatccagcgccttcctgctcatgtacactctcgggcagctcacagacaacatctcccacaatcagtaccgccaatccaagaaaagaagctacagcaacttggagctccctagaacaggcaaattctttggacaccaagaacctcttccccggacaataacagtcaagaaattgaacgaatgctagcttgtgattggtttcgtgtgagaatcttgctcaatttggtggctatagatattttttcctctcttcctttttggctgggaaagaaaagccgagggaagtggcggctccggatggagggatggagggcgtgggggatttaaatatggagcatgcggaggaggagaaagcgggatttgtggaggcgcacaggggaggctgcctcccgccgccgccgccgcggcatcgaggaaggaccagtccttctccactacgtccgcgacggcgatgccgtctgggagcgcggcaaccgggccagcgcgacgggagggcggtgagcgcgcaaggccatggatgggggagagggtggtgttcgccgggaaggtggagaggtagggggagaggggtggaagaggaaatcttcgctgggacggttgcctggagcaacctacccacgcaacgggtttccttggaccggtgcctgggcgaaaaggagctgggggtcgcgtcccccagcgaggcgtcgcatggtcttgcgagggaacggcttttttgcttttttgaacggaagcaaacggcgtcaggtgaggggactagctggagacacccattgctgatggccttatggattgctcacttatctgattctttttacagtttcacatggagTttttgtttaaggcttgagtttgctgttcccgatgcaggatgctccttgtagtggatcaacaggagttggtgcattttcttgttgcccttttgttatgcaagtctgccttgtttcgtttgaaagtggattccggtttgtttctggcagtgaacttattattgaagcttttgataagacaaatgtattgattctgatcttcatgcggttgatcaagaagtttgaagttgtagttcctgttactgtgttagtccaagttttcatatgctaattaagcgaagaaacttaatgtggcatggtagtaattgaatttttggtgtaatctttggtaggtttcggagaaaaaagaatataggtcagtttctttttgcagttttcatgagttcagatacattataggaagctcggaaaaagtccaTtttacaccctcgaactcttatgcttgtctaaaatacacccccgaactccaaaaccggatataatatacccctcaactgtcaataCcggacactttaccccctggagctgttttgccggtggtttttgcacacatggacgacactttggatgccacatcagcgcacaggatgttttgaccaactttttcacaagctgcagcggcagcggcgcggggaaggagcatgtccgacaggctgctgcggtcatcggcggaggaggtctgcgcgccagcggagatggctgagcagggaagcagctccgcgtggggaagaagccacagcaagcaggtggtatttgcggctgagtcggccgcggaacaagctttggctgcaccacgcacgctcgacgccttcacgcggccgttcaggcgcgccgccgcgagcgcggggtggaggttcaccatcgtggggactaggaaatacgcgttcccgagagacctaaccaggacgtcgtcgctggtcatgatgtgcgtgatcctagtcgctgggaggaaccgcgcgacatgctccaattgctcattcgggacggtgaggatgacctcctctccgcggttcaccagcgatcgcagcagccgatggtccgtgccgctgctgaacacgcgcacatgcttggtctgcttagactgaacaatcttggcgaacactgacgatgagttctccggcgaagcgatcgtgctggtgccaacaaaagtccatgctcatcattggagtagaaaattcagtgtaggatgggcaaacacaacagatgatttctgaattctgaatctctaattactggcaaagtgcaaaaagataaaagttcagttggttcttcagtataattaagtatgttaatccatgcatattagtaatttcgtcagacacaacagggaggcctcctttcagccggtctcggccaccacctgagccagcggtgagaaccccagctgccgccgccgccccacgccttcttcattgcttcaaagacgcaagacgcgcctgcttcctcgctgtttcaaagaacaatgaacagggagagagaaagaacgaatgtataaaagagaacgcattatttcatccgacccggcgaagaaatgatgtggcatccgaagtgtcgtccacgtgtgcaaaaaccaccgcaaaacagctccagggggtaaagtgtccggtattgacagttgaggggtatattatatccggttttggagttcgggggcgtattttagacaagcataagagttcgagggtgtaaaatggacttttccctaggaagctcaaactttcttcaatattcatgagtttgagctgggaatgtcctatactgtgtctatgattgttagccttgataactgattcttgcctgttagccttgactgttgatttcagtgaatctttctacagtattgcagttgtttgactgatttattttgttgtaagcatatgaatgcttctgtggccctgccttttagttagcttaagcattccctttttCccttatgagttactccctctgtcctaaattacaaggcctataTtttttttcacggtcttcaataacatactttgaccattattttattccattctatgttctcgacaaatatgaaattagcatcacatgaaaggacttcaaaatatgaatctagtgatataacatgcataatagttagtatgattattagtcaaaagctaccgagtttgattttccttaaaaagggggcaccctataatttgagacgaagggagtaggttgtaacatctgaaatgtgccttcaagctgtttggtctccaaaatcaaatattaattattttttacttattcattatacatctgtattttcacgtatcCTcttttctggacctaagcccaatccatgcaagtctaatttgttggttacttagtttctaaccttctataatcataTtttgatgtgctacttaaTtttttctatagaggccagtggttatttcctgTttgctgttcagttatcttttatccatcacaggctattatctttCtcttgatcgtctcgggtcttcTttttgttacgttttcagtatcctactttccttgttccttTCtttctaacaacattggtaagagttttgaatgtatgttctagtttggggccaattgcaaatgaggttatgaggatgccttgtggtgtgctgcaggggcaaatgttcttctgttcttggtagaatacctgttggtatcctaggtgcttgaggtcttctgtttgtggtctgTttgatgctgttctttctgtttgcaacctctcttgcacactaaactgctggcatgctggcatgcgtgtagtgaaatgctcctttatgtgatgcttactgttataaatagtgtagccttgtagcttgacatttggctaatgacatgttacttactcattgctatactgattataatattaaccctgcagaagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcacttgaaaagccaccttcaggtacttgtcatccatttgtctcacattatcagaaatgcagcattgctcttaagtttgctactcataccagaaatacagattaggaaagcaatctggcaaagagatggcagagcaatcaaaagacggtaagttacagaaacatgttgatatgagaagctgaggcaagtgagcacaacctcactgttaatttcatgcatgatcatctgacccaaaaaaaaaaaaaaagcggctagggtaagctaccaattttaccaatataacattcccatggcatgtgtatatggtctgacttaaaatatgaattttaaagcaagcaaatgagggattaatatggctcacgtacctagaagcttccgcaaatatttgagtccaactttaaccatttgtagttgtggacttgaactttctacgagcaggcttttggagctttacttctgagagccacccatctgtaaagcttttaagaaaatatagttaactccatcttggcctaccttcattcagggccggttccgctgatttaagggccctagggcgttttatactcgacgctatgctactattttttctttacttgtaaacatactttataaaccattcatcctctaaagtgacacaaataaacattactaacatgacaaatcaagtactaactagtaagacctcacttgcaatatgTttttattctcgataaataatgttgatattacaatcagaaaactgaaataaagaacaacaaagaaaaaaacaaacacgcaaactagtggaaaaaatggaactattcattatccatgagtatttataagttgaaaaacaatcgtcctaaaaaattgttgaaaacaaaagtaatttttaactaagacgcaaaaatcaacactcatgagaaaaagctcgtaaagataataagaaatctgatatatagaccatattggactggccccctcgtagcctgggccctaggcgctcgcaccttccgcctatttgaaggttacaatttaaatgaaccgattctttcgagagattcgaccaaaATtttttggccagttgcaaaatacaccatgacccactggtaagatattaaacaataaaaaatatctgagaagttgacacacctctgatgtacttaggcattttcgaagtatttttctttgaaaactgctgacattagtggatagaccaagTatttttattaaatacctgtcttgcattacttgccctcaagtcataatttttcttggtcacatccaaatatagctaatattgcattttcgtatgggctcatcagttctatacttttatatacaacttcattttcaattgcagagtacatcataatatgatctagttacatctattgctttttcccaaaatttcagcttcttatattttgggagctcaaagtggaacaaatctatctcctacagttccaactccagatttgaaagagtaagctttgtcagctacatatgtagcatgactgtccaaaattctgtctcattgtgtccacttctagtcaggatatttatgttgcatcattgcatgtgacatgtgtgatttggactgtactgatattacatagtacaaatgtacaataacttcttcgtaggagtcaagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaagtggaggtaagtaaagttttctctaaaatggcatcagcatgttgaaataagacagttcaccaaatgcttctttttgttgcaaatagttctgagttctgacattcctaggagacttggtactcatacggaatgtaacataggctacgaccttgggcactcactacttccctcgtaaatatgaaatattggtcacttAaaaatcgattaatatgaaaactatgatgctttacttttacaataaatggacctgtgtttccctgctggtctaaacaaatagaatgatccatcttagtgactcttctgtgtgcagttttctatatgttggacattactctaatagttcagactatgtatgtgtggtaatttcaaattcaatccaagactagcagtttacaTtttttttttagttaatgccaatatgaaattgaatagtaattcctgttcttggtaggagttcagactcaggcccttcgggcttttgtagttgacaaaatgcagacaagaagtactttatccaaagtctgccctgctttatgttcatttcaaactgcggagaataggtttcagtagctgaccatcgtgtttttgtttgtcaggtccagaggcatgtacagatccgaatggaagcgtaccagaactacatcgacacgctactggagaaggcatgcaacatagtatctgagcaactgaatggcttcagcatatctgaccatgatctaacctctgctggtgtcatgTtgagctcttcagacaccttgagcccctccatcttccaccagctctctgtcagctcgatcagcctgcacagtcccggaggcaaatcctcccCTtttgcagctgatgctgacctgttctttcagaaggcgcctgaaaaacgcaagtcatattgagatacagataggtgaagatccatgacctgcttccttctggaaaagccagggggaattctgatgatatcttgcaggacgcccagcaattgtCctgtttctagtagctagactagcactgaacaaggctctcttaccttgatctatttcagttaatctagactgacctttgttaatatcctgtggctagtagtcgtagactgatcaagaacctttatcgatgcgtaagtatcttgtaattcagagtcctagctcccaaattaacacacttcggttatttgtatgcttttaaCcccatataattgggaatactgaaagtgcaactcatattacatggatgtctcacatgattatcttatctatgcacatattattggctt
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| CDS seq | atgttccccggcctgatccaccaccaccgcctccttgacgccgatgtcggcggcggcggcggggggagcagcgccggcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgaccgcttcgtcgacgccgtcgcccagctcggcgggcccgacaaagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcacttgaaaagccaccttcagaaatacagattaggaaagcaatctggcaaagagatggcagagcaatcaaaagacgcttcttatattttgggagctcaaagtggaacaaatctatctcctacagttccaactccagatttgaaagagagtcaagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaagtggaggtccagaggcatgtacagatccgaatggaagcgtaccagaactacatcgacacgctactggagaaggcatgcaacatagtatctgagcaactgaatggcttcagcatatctgaccatgatctaacctctgctggtgtcatgTtgagctcttcagacaccttgagcccctccatcttccaccagctctctgtcagctcgatcagcctgcacagtcccggaggcaaatcctcccCTtttgcagctgatgctgacctgttctttcagaaggcgcctgaaaaacgcaagtcatattga
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| Protein seq | MFPGLIHHHRLLDADVGGGGGGSSAGLVLTADPKPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSHLQKYRLGKQSGKEMAEQSKDASYILGAQSGTNLSPTVPTPDLKESQELKEALRAQMEVQRKLHEQVEVQRHVQIRMEAYQNYIDTLLEKACNIVSEQLNGFSISDHDLTSAGVMLSSSDTLSPSIFHQLSVSSISLHSPGGKSSPFAADADLFFQKAPEKRKSY |
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| Function | Protein PHR1-LIKE 3 [UniProtKB/Swiss-Prot:Q8LAJ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0012120 | OsLima_08g0012120.01 | Chr08 | 15107511 | 15115974 | + | NAM | ||
| CDS seq | atgttccccggcctgatccaccaccaccgcctccttgacgccgatgtcggcggcggcggcggggggagcagcgccggcctggtactgacggccgaccccaagccccgcctgcggtggacggccgacctccacgaccgcttcgtcgacgccgtcgcccagctcggcgggcccgacaaagcaacacccaaaactatcatgaggacaatgggtgtgaagggtctcaccctttttcacttgaaaagccaccttcagaaatacagattaggaaagcaatctggcaaagagatggcagagcaatcaaaagacgcttcttatattttgggagctcaaagtggaacaaatctatctcctacagttccaactccagatttgaaagagagtcaagaactaaaagaagcactcagagcacagatggaagtgcaacgaaaattgcatgaacaagtggaggtccagaggcatgtacagatccgaatggaagcgtaccagaactacatcgacacgctactggagaaggcatgcaacatagtatctgagcaactgaatggcttcagcatatctgaccatgatctaacctctgctggtgtcatgTtgagctcttcagacaccttgagcccctccatcttccaccagctctctgtcagctcgatcagcctgcacagtcccggaggcaaatcctcccCTtttgcagctgatgctgacctgttctttcagaaggcgcctgaaaaacgcaagtcatattga
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| Protein seq | MFPGLIHHHRLLDADVGGGGGGSSAGLVLTADPKPRLRWTADLHDRFVDAVAQLGGPDKATPKTIMRTMGVKGLTLFHLKSHLQKYRLGKQSGKEMAEQSKDASYILGAQSGTNLSPTVPTPDLKESQELKEALRAQMEVQRKLHEQVEVQRHVQIRMEAYQNYIDTLLEKACNIVSEQLNGFSISDHDLTSAGVMLSSSDTLSPSIFHQLSVSSISLHSPGGKSSPFAADADLFFQKAPEKRKSY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.366347 | 0.068665 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0346400 | RBH | 3.125450 | 2.365536 | 11.700198 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g25799 | RBH | 1.814885 | 1.264258 | 2.507145 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0346400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0012600 | RBH | 1.636645 | 10.547158 | 4.927530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012730 | RBH | 0.803103 | 0.380558 | 2.305140 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012780 | RBH | 2.008871 | 8.890606 | 9.443140 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0012710 | RBH | 0.199663 | 0.048185 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012530 | RBH | 17.702915 | 13.892149 | 9.366601 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0241900 | RBH | 6.9542405 | 10.899655 | 29.1438265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012630 | RBH | 0.574789 | 0.226319 | 0.837774 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0256600 | RBH | 13.9721625 | 16.406815 | 53.643169 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004780 | RBH | 0.154558 | 0.199608 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012300 | RBH | 0.932224 | 4.856739 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012180 | RBH | 6.575727 | 10.151031 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012970 | RBH | 0.517470 | 0.575999 | 0.370707 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012200 | RBH | 0.237653 | 3.293985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012390 | RBH | 0.950975 | 3.456195 | 3.590489 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0012330 | RBH | 0.000000 | 11.906261 | 6.259047 |
