Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0001300 | OGI:12000210 | 27/50 | Minghui 63 | MH63RS3 | HZAU | Chr12:128398-130989 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | ATGCCTCAGACCCCTTCGACGCGGTGGTGCCCGACGCCGGAGCAGCTGATGATCCTGGAGGAGATGTACAGGAGCGGCGTGCGAACGCCCAACGCGGCAGAGATCCAGCAAATCACGGCGCACCTCGCCTACTACGGCCGCATCGAGGGCAAGAACGTCTTCTACTGGTTCCAGAACCACAAGGCCCGCGAGCGCCAGCGCCTCCGCCGCCGCCTCTGCGCGCGGCACCAGCAGCAACCCTCACCGCCCTCCTCCACGGTGCCTCCGGCTCTCACTGCTGCTGCTGCCGGTGCCGTCGTGCAGGTGCACCCCGCGGTGATGCAGCTACACCACCACCCCCACCACCATCACCCATACGCTGCGGCCGCCGCTGCCCAAAGTCATCACCTGCAGCAGCAGCAAGCTGAGTGGCCGGCGGCGGTGGACTACTGCAGCACTGCATCGGCGTCAGCGTCGGCAACTGCTGCTGACATGGCGATCCCGCCGTGCTGCCGGCCGCTGAAAACGTTGGAGCTGTTCCCGACCAAGAGCACCAGCGGCGGCCTCAAGGAAGATTGCTGCAGCAGCTCCAAGTCCTCCTCTTGCTCCACCTCCACCAATTAATTACTAGCAGAGAGTAATCCTACTTCCCCTCTAAGCTAGCTAGCTGCTAATCACTTAGATCTATCGATTTAATTTGTTTCTGCGGCCATATGCGTGCCCTCAAGTTCGTACGTACGTACGTGTGTGTGCCACTGCCAATATGCATGCCACATGTGTGTCGGCATATCGTTCGTTTCGTTATCGCTTCCTCGATCGATTACATATTTGATATTGTTCTTAAATTAGTTTTAGCTATCTAGGTTAGTCAATTTCCCTCGACTCTTTATGTAATCTGGTGAGCTAGCTTAGCTTCTTTGTGTACCAATGGACTTTGCTGATCAATTATCTATATATCGCTTGCTGTTGATTGACTTTTCGTTTTCGACACCTAAGGGCCTGTTTACTTCGCGAACCAAAATTACGTGTCACATCAAATATACGAACGCATTTGAAATATTAAACATAGATTAATAACAAAACAAATTACAAATTCTGCCTAGAAACTGCAAGACGAATTTATTAATCCTAATTAATTTACCATTAGCAAATGTTTACTGTAGCACCATATTATCAAATCATGACGCAATTAGGCTTAAAAGATTACACGTAATCTTTGTAATTAGTTTTTTTCTATATTTAATACTCCATGCATGTGTCCAAACACTACTAAGTGATCTTTGCCGAGTGGGGAAAAACCACAATTGTCCCGGTTTGGATAGGAACTAGTACTAAAGATCATTTTTCGTCCCGGTTTAAAACTTCGATGATTTCAACCGGGACTAAAAATCATCTTTAGTCCCGGTTCATTCAATGTGACAGGAAACTAAACAGACTGACAGAATGAAAAAAATTTTTGTTTGGAAACTAAACAGGATTTTTGCTAAGTACCATCTCGTCATTCTATAGCTAGTCAATTAGCCGATTCATATGACATTTCAATTGACTAGAAGGACGAGATAAGTTTCTATTTGACAAATTTATTACGTATAATCCTGACTGTTTTTAAACAACCATTAGAAATAACCTATACTAATCTCTAACGGTTCTGAATCGAAGACTTTAGAGAGATCACATGGCATCTCTAATGGTTATTGACCTTCATGGAGAGGTCAACAGTATGATATCACATAATCACAAACCTTAAGCAATACAAATGTATGGCAATTTGACATCATGCATGGATGATAACCACTCGCAGATCTAAATCAAAATCATCGCGCGATTGAACTAGAACAATTAATATCACACTTTCAAACATAGGAAGATGAACTGTAGGGCGTATATATAATTATATATAGTAATGTCATATATTCATGTATCAAAATATAAGCTTGCACAATAACTTGACACCAATTATATATGGATCTTAACAAAAACCATGTTGCAGCTATGATCAAGCAGAACAAATAAATGAATAGAAGTTACACTACTACGAACATAGTTTTTGATGGTGACAAAATCTGGTTGTGCATACGGCCGAGCCACCAGCCTCTAACAAATTAACTACCAGTTCCACAACCGTCTATGAAAAATAGATTTTCAGAAGCGAGTACTCTAAAGAGACCGCTTGTGAATTGATTTTCAAATGCGATAGTCTAAAGAGATATGTCCATGCAAATGTCTTTTGGTGCAAAAGAAAATGGAAACTAAAATCTAATCATAGCCCGCAGAATCCCAAATTCACAAATTCGCCAAATCCATCACGGTGCCCCTCTGCACGCAATAGCAGCTGCAGCCATGCGACGATGTCCTCACCATAGTCATTGTCGCTGTCGTTGAGTCAAATGCCTCGTCGTGGTTGTCATCACCGAGCCACCATCGTCGCCGAGGGGGTTAACGAAGAAGGGTAAGGAGGCAAAGCGAGCAGATTTGCCACTCCCAAGACCATGGGCGGCACGCTCAGTGGTCGAGTCGCTAGGAGGGAGGGAGAGGAGCAGTTTGGCAGTGGTTGACAGTGGTGGCGACATGGATGGAATAGAGCGAAGGAGGAGAGAATTGGGAGAGAGGTAG
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| CDS seq | ATGCCTCAGACCCCTTCGACGCGGTGGTGCCCGACGCCGGAGCAGCTGATGATCCTGGAGGAGATGTACAGGAGCGGCGTGCGAACGCCCAACGCGGCAGAGATCCAGCAAATCACGGCGCACCTCGCCTACTACGGCCGCATCGAGGGCAAGAACGTCTTCTACTGGTTCCAGAACCACAAGGCCCGCGAGCGCCAGCGCCTCCGCCGCCGCCTCTGCGCGCGGCACCAGCAGCAACCCTCACCGCCCTCCTCCACGGTGCCTCCGGCTCTCACTGCTGCTGCTGCCGGTGCCGTCGTGCAGGTGCACCCCGCGGTGATGCAGCTACACCACCACCCCCACCACCATCACCCATACGCTGCGGCCGCCGCTGCCCAAAGTCATCACCTGCAGCAGCAGCAAGCTGAGTGGCCGGCGGCGGTGGACTACTGCAGCACTGCATCGGCGTCAGCGTCGGCAACTGCTGCTGACATGGCGATCCCGCCGTGCTGCCGGCCGCTGAAAACGTTGGAGCTGTTCCCGACCAAGAGCACCAGCGGCGGCCTCAAGGAAGATTGCTGCAGCAGCTCCAAACCATGGGCGGCACGCTCAGTGGTCGAGTCGCTAGGAGGGAGGGAGAGGAGCAGTTTGGCAGTGGTTGACAGTGGTGGCGACATGGATGGAATAGAGCGAAGGAGGAGAGAATTGGGAGAGAGGTAG
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| Protein seq | MPQTPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQRLRRRLCARHQQQPSPPSSTVPPALTAAAAGAVVQVHPAVMQLHHHPHHHHPYAAAAAAQSHHLQQQQAEWPAAVDYCSTASASASATAADMAIPPCCRPLKTLELFPTKSTSGGLKEDCCSSSKPWAARSVVESLGGRERSSLAVVDSGGDMDGIERRRRELGER |
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| Function | WUSCHEL-related homeobox 3 [UniProtKB/Swiss-Prot:Q33DK1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0001300 | OsMH63_12T0001300.1 | Chr12 | 128398 | 130989 | + | maker | ||
| CDS seq | ATGCCTCAGACCCCTTCGACGCGGTGGTGCCCGACGCCGGAGCAGCTGATGATCCTGGAGGAGATGTACAGGAGCGGCGTGCGAACGCCCAACGCGGCAGAGATCCAGCAAATCACGGCGCACCTCGCCTACTACGGCCGCATCGAGGGCAAGAACGTCTTCTACTGGTTCCAGAACCACAAGGCCCGCGAGCGCCAGCGCCTCCGCCGCCGCCTCTGCGCGCGGCACCAGCAGCAACCCTCACCGCCCTCCTCCACGGTGCCTCCGGCTCTCACTGCTGCTGCTGCCGGTGCCGTCGTGCAGGTGCACCCCGCGGTGATGCAGCTACACCACCACCCCCACCACCATCACCCATACGCTGCGGCCGCCGCTGCCCAAAGTCATCACCTGCAGCAGCAGCAAGCTGAGTGGCCGGCGGCGGTGGACTACTGCAGCACTGCATCGGCGTCAGCGTCGGCAACTGCTGCTGACATGGCGATCCCGCCGTGCTGCCGGCCGCTGAAAACGTTGGAGCTGTTCCCGACCAAGAGCACCAGCGGCGGCCTCAAGGAAGATTGCTGCAGCAGCTCCAAACCATGGGCGGCACGCTCAGTGGTCGAGTCGCTAGGAGGGAGGGAGAGGAGCAGTTTGGCAGTGGTTGACAGTGGTGGCGACATGGATGGAATAGAGCGAAGGAGGAGAGAATTGGGAGAGAGGTAG
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| Protein seq | MPQTPSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQRLRRRLCARHQQQPSPPSSTVPPALTAAAAGAVVQVHPAVMQLHHHPHHHHPYAAAAAAQSHHLQQQQAEWPAAVDYCSTASASASATAADMAIPPCCRPLKTLELFPTKSTSGGLKEDCCSSSKPWAARSVVESLGGRERSSLAVVDSGGDMDGIERRRRELGER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0652275 | 0 | 0.284532 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0101600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01130 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0101600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000120 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000130 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000110 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000120 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000130 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0001200 | RBH | 0.0021305 | 0 | 1.1353605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000090 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0001200 | SBH | 0 | 0 | 0.897783 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000130 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000130 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000120 | SBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C12g38051 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_12g0001600 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_12g0001500 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_12g0001700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_12g0001700 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G1223468100.01 | SBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G1133878500.01 | SBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_030458 | SBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G1233369700.01 | SBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G1235251100.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG1226559900.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1231947100.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G1231050500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1224670100.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1221952100.01 | SBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G1218195300.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G1226815300.01 | SBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1235186700.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G1223176700.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1232928100.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG1222970700.01 | SBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1120975700.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG1231232900.01 | SBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1220786500.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G1222698300.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1244567900.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1128174700.01 | SBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG1226153300.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1221065500.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1226686100.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1229007100.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1231417500.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G1127027300.01 | SBH | None | None | None |
