Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0024000 | OGI:11004350 | 35/50 | Minghui 63 | MH63RS3 | HZAU | Chr11:1208924-1211751 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | ATACAAGTTGATACTTTGTTCTTGACACCGAGCTGAAAGACTGGTACTATAGTAATACCATATACCCAAGAACTATAGCTAAAACAAGCTAAATTTTTTTCCTTTCTTTGTCGGCATTCTTCTCGTTATGTATGATCTGTTAATGCTTTCCCTGCACATAACACCAACAAACCAATAACACGATCATCAAGACTTGGACAGGAGGCAGATTATATATAGTACATAATATTGACTAGTTGATTCCTGTTTCACTCCAAAAAGGTTGGAATTACTGATACTTACTCAGCAAAGATGAAGCCCCCTCTCCTTTACTATGTGTAGTCTTATAAACCAACTACTCCTCAGCAAGGAGAGAATCTGAAGACATACAACAAAATAGTCTATCTTATATAACTGCAGTAATTGCAAATGCAACATGGAATTGCAAATGTACAGTGATTTAGGGAAGAGATTTGGTTTGGGATTTTACCTTGGCGCTTGAAGGAAGCATGAGTTGTAGGGGGCAGCTCAAGGGTGCATGTTGGGAGGAATAGAGATGAGGCCACCTTATGAGGGCTACTACTGCTGCTGATGTTACTAGTGTGAGCTGTTGCTGCAACATTGGAAGCCTTGGTAGGAGATGAGAAGGGGCTATGAGGCAAATTGTACTCCATTCCACTACAAAACAAACATCAACAAACATGTCAATACCAGAAAAACAAACATCAACAAACATATCAATACCAGAAAGTCCTTCGGCAACTAGCATGACTTGCACAAAAACTACTTAATAATAGGCATTTATTGTGCTAATTAGTTTCTTAACTGCTTTATCCTATCCTTGCCTTTGCATTTCTTTTCCCATTGGTTCCTTCTAATCAAGAAAAACATTTGATCAACATTATTACTTGTCTACTCGTTATCTTCTTTTGTATTTGCTTCTAAAGCAAGAATTGTTTAAGTCAGAGAGAATTATATAACACACATGTGAAAAAAAAGGAAAAATATAGCAAATAAAAGAGGTAACAAGTTTAATGGTATATTCTGTCCTTTTTCCAAAATAAATATCCTACGTTTTAGTGTTCATCTAGCAAACCTTTTTCTATCATCATCTTACCTTTCCAGGAATCCACAAGCATCATTAGGTGTTGCTGCCTTGGGACCATATTCTCTCTTCCCCTCTTCCGTAGAGATGACCGTGCGCTTGGCTTCTGTGGAGATTGCAGTAGAGGCAATTTCCCTCATAGCAAACTCATTCTTCAGCTTATTGTCTATAAATAAAACAAGAAGTCACAACCTTAGTACAACATAATTAATAAACTTTCCGAAAAAACATAATTAATAGACAAGACATTACAACGACCAAGAACTAGACCTCAAAATGTGACATCCTCCAAATGAATGGGATTGTCATTCTCATTAATATTATATTTGTTATCAACTTGTCCTAGAAGCACATGTGAACCCATGGGAGAGCTGAGATGATGGCCCCAATCCTGAAGATTGAGAAGCGGAAGCCTCATTAAGCAACGACGTTGCAGCTCGGTCGCATGTTGTTGTTCATCTTGCTTCATCCTAAAAGATGCCTCATGACTAGCCATGTCCCTATACAAAATTCTCGGCCCTAACACAATGTAACACTCCTTGTAAATTGTTAAAAAAAAGAGATCAAAACACAAGCACCACATAGATATCACTGCTCACCTATTTGGTGTCGTCGCAGGTCAAAGGGCACCCTAGAATAAAGCAATCTATTGTGATTCATGTAGCTAGGAGAGTCACTTTGCTGAAACTTTCTGCAATTTTAATAAAATCAATAGACTTTATGCAATTTTTAAGAAAAACAATAGAAGTACTCACAAAAGGTAATATATGTGCAAAAATACAAAGTGGAATTAGGCAATGATTAACATGCCTGAACTTGTTGGGGACCTTGTCCTTCTCCTTGTATGGCTTGACAAGAACACGTGCATCACAGATGTAATGTGGGTTGCCCTTGGCAAGAATTAGCTTCACTGTCTTTTGGTAGGCGAAGGTGACAAAACCAAACATGCGCTTCTCCTGGTATGGGATACGCACATCTTGCACCATCCCATACATGCTGGTTGTCCCCACACAACACAAACAAGCCAAAACAGATTGCATTCATTAAATTATGAAATGCTCCAATATTGAAACAAGACACATCAATAGGGGCACTATGGTGGAACATGTGATACCTAAAGTAGTTGCAGACATCCTCTTTGCTGAAAATGGAATCAGGCGGGAAGGTCAAGTAGATCTGTCGTGCACTGCAGTTGTTGGTTAGGTCACTTTGGTCTATCTGAGGTGGTCGAGAAGAGTACTCTTGCATGTCGTCGCTACCAAGATGGGTGGTCATTCCGCTGGTACAATAGAGATTAGTGTGTGGATCTAAGAAATGTGATATTATAGGGTTGAAGATGGAACCTTTGGTAGTATAGACATGGCTTCCACCCAGGGGTGTTGACGGTGCTTGACAAAAAGCTCCGATGGTGATTGCCACCGATTGGTAACTTCCAATCATACTCCTTAGAGGAGAACTCTTCACCTCCATCACACCCCACCTTGTCAATGGAGAAAGATGCCTCCTCACCTATATCGGACGGGAAGCCCCAGGAGGCCATAGGAGGGGAAGGCTTGTTGGTGAGGTCGGTGCGCACCTTGGCAATGATAGATTGGAGGAGGTTGTCAGGGCCACATGCGAGATGAATCATGTCCATCTCATTTTTATCCTTGGTGAGGAGCATGCCAATGATGTTTGGAGCAAGATTGGGCTCAAGCGCTTGCAACCGGGCAAAAACCACCTTGGTGGCCTCATAGGCGCCCAT
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| CDS seq | ATGGGCGCCTATGAGGCCACCAAGGTGGTTTTTGCCCGGTTGCAAGCGCTTGAGCCCAATCTTGCTCCAAACATCATTGGCATGCTCCTCACCAAGGATAAAAATGAGATGGACATGATTCATCTCGCATGTGGCCCTGACAACCTCCTCCAATCTATCATTGCCAAGGTGCGCACCGACCTCACCAACAAGCCTTCCCCTCCTATGGCCTCCTGGGGCTTCCCGTCCGATATAGGTGAGGAGGCATCTTTCTCCATTGACAAGGTGGGGTGTGATGGAGGTGAAGAGTTCTCCTCTAAGGAGTATGATTGGAAGTTACCAATCGGTGGCAATCACCATCGGAGCTTTTTGTCAAGCACCGTCAACACCCCTGGGTGGAAGCCATGTCTATACTACCAAAGCGGAATGACCACCCATCTTGGTAGCGACGACATGCAAGAGTACTCTTCTCGACCACCTCAGATAGACCAAAGTGACCTAACCAACAACTGCAGTGCACGACAGATCTACTTGACCTTCCCGCCTGATTCCATTTTCAGCAAAGAGGATGTCTGCAACTACTTTAGCATGTATGGGATGGTGCAAGATGTGCGTATCCCATACCAGGAGAAGCGCATGTTTGGTTTTGTCACCTTCGCCTACCAAAAGACAGTGAAGCTAATTCTTGCCAAGGGCAACCCACATTACATCTGTGATGCACGTGTTCTTGTCAAGCCATACAAGGAGAAGGACAAGGTCCCCAACAAGTTCAGGCATAAAGTTTCAGCAAAGTGA
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| Protein seq | MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDKNEMDMIHLACGPDNLLQSIIAKVRTDLTNKPSPPMASWGFPSDIGEEASFSIDKVGCDGGEEFSSKEYDWKLPIGGNHHRSFLSSTVNTPGWKPCLYYQSGMTTHLGSDDMQEYSSRPPQIDQSDLTNNCSARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKRMFGFVTFAYQKTVKLILAKGNPHYICDARVLVKPYKEKDKVPNKFRHKVSAK |
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| Function | Zinc finger CCCH domain-containing protein 53 [UniProtKB/Swiss-Prot:Q0D3J9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0024000 | OsMH63_11T0024000-mRNA-1 | Chr11 | 1208924 | 1211751 | - | maker | ||
| CDS seq | ATGGGCGCCTATGAGGCCACCAAGGTGGTTTTTGCCCGGTTGCAAGCGCTTGAGCCCAATCTTGCTCCAAACATCATTGGCATGCTCCTCACCAAGGATAAAAATGAGATGGACATGATTCATCTCGCATGTGGCCCTGACAACCTCCTCCAATCTATCATTGCCAAGGTGCGCACCGACCTCACCAACAAGCCTTCCCCTCCTATGGCCTCCTGGGGCTTCCCGTCCGATATAGGTGAGGAGGCATCTTTCTCCATTGACAAGGTGGGGTGTGATGGAGGTGAAGAGTTCTCCTCTAAGGAGTATGATTGGAAGTTACCAATCGGTGGCAATCACCATCGGAGCTTTTTGTCAAGCACCGTCAACACCCCTGGGTGGAAGCCATGTCTATACTACCAAAGCGGAATGACCACCCATCTTGGTAGCGACGACATGCAAGAGTACTCTTCTCGACCACCTCAGATAGACCAAAGTGACCTAACCAACAACTGCAGTGCACGACAGATCTACTTGACCTTCCCGCCTGATTCCATTTTCAGCAAAGAGGATGTCTGCAACTACTTTAGCATGTATGGGATGGTGCAAGATGTGCGTATCCCATACCAGGAGAAGCGCATGTTTGGTTTTGTCACCTTCGCCTACCAAAAGACAGTGAAGCTAATTCTTGCCAAGGGCAACCCACATTACATCTGTGATGCACGTGTTCTTGTCAAGCCATACAAGGAGAAGGACAAGGTCCCCAACAAGTTCAGGCATAAAGTTTCAGCAAAGTGA
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| Protein seq | MGAYEATKVVFARLQALEPNLAPNIIGMLLTKDKNEMDMIHLACGPDNLLQSIIAKVRTDLTNKPSPPMASWGFPSDIGEEASFSIDKVGCDGGEEFSSKEYDWKLPIGGNHHRSFLSSTVNTPGWKPCLYYQSGMTTHLGSDDMQEYSSRPPQIDQSDLTNNCSARQIYLTFPPDSIFSKEDVCNYFSMYGMVQDVRIPYQEKRMFGFVTFAYQKTVKLILAKGNPHYICDARVLVKPYKEKDKVPNKFRHKVSAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0099655 | 0 | 0.0132185 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0125700 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03220 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0125700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001680 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001720 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001700 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001660 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0019600 | RBH | 0.7498325 | 0.350319 | 0.3731105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001670 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0024200 | RBH | 0.0351145 | 0 | 0.054073 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001640 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001720 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001660 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001620 | RBH | 0.0 | 0.0 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | NA | NA | NA | NA | NA |
| Os XI-adm: HZ | HZ | PKU | OsHZ_11g0019500 | SBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_11g0018100 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_11g0019200 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_11g0018400 | SBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | NA | NA | NA | NA | NA |
| Os cB: Basmati1 | Basmati1 | SICAU | NA | NA | NA | NA | NA |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_027854 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: D62 | D62 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: DG | DG | SICAU | OsDGG1226669200.01 | SBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G1232058000.01 | SBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G1121499600.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G1222043400.01 | SBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: G8 | G8 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1A: II32 | II32 | SICAU | OsII32G1132669600.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG1233045200.01 | SBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | NA | NA | NA | NA | NA |
| Os GJ-trp: Lemont | Lemont | SICAU | NA | NA | NA | NA | NA |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG1224214800.01 | SBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: R498 | R498 | SICAU | OsR498G1271252100.01 | SBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | NA | NA | NA | NA | NA |
| Os XI-1B: S548 | S548 | SICAU | OsS548G1141302200.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG1128274000.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | NA | NA | NA | NA | NA |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG1221164800.01 | SBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G1226787000.01 | SBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG1229108400.01 | SBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G1231517800.01 | SBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | NA | NA | NA | NA | NA |
