Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_09G0338200 | OGI:09058710 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr09:21913245-21916827 | ||||||||
| Gene Symbol | RF2A,RF2a,OsbZIP75 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | TCAGTTGCCGCTGCTTCCTGACTTGCCATCTCCCCACTGGCTCTGGCCGCCCATCGGCGATTTCATCTTGAGGTCTCGTGCCGCCTGCTGGAGCTGCTGCGCTTGTAGAGGGTGCAATGGCTGCTGCTGCTGATGCTGAGGGTGCAGCACCTGCTGCTGCTGAGCCTGAGGATGAAGCTGGAGCTGTTGCAGCTGGTGTGCTGCCAGCATAGATTGCATGGCCTGGTTGTTCTGGAACATCTGCTGGTTGCCTCCGAATTGGTGTGGCATGCCACCGAAGTTCATCATCATCCCTCCACCATTCGCCATTTGACCGGTTGCAACCTTAAGCCGCTGAACCTCAGACTTCAGGGTGTCATTCAAAGCTACATCAGGAATAACCAAATGTAAGTAACAAAACAGCAAAACATCAGGATTAACCAAATGTAAGTAACAAAACAGCAACTCCCCTATAAATTCTCTTGCACGCCATTATCATGAAAGGTGATGACAAGGTTGTTTTTAGTTTTGAGGACGACAATGTTGTATTGTATTGAGCACTAAATAACATAAATACAAAGAAGAGGCCAAAAGGAGGAAAAAAACCACTATATGAACTAAAAATATTTTGTTATCATTGAGAAATTATAAACTTCCTCTTATACAGGTGCTTAGATTATAGGTGACAGATTTTACTAAGGCAACTTCCAATATATGCATAAACAAAGATCTTACAAATATTAATATTAAGGCAGTAGGCCTAATCACAGAAAACCGTAAAGGCTAAAATTTGGCAGAACTAGGGATCAAATATATGAATATTACCATCTTGCAAGTGGACTTGCTGCTCCATGGTCTGCAGACGTAGCTTCAGTTCACTATTCTCAGTAGTTAGCCCACTGGTATCTCTCTGTCATGACAAAATAACGTGCAAAAATCATTAGGCCATCCAAATTCATGGTTTAAACAAAAATTGAGCATCCAAAAAGTTAAGTATGTGGATGCATTATCTGTATCCATGGATAGGGAACAAAGCTCTAGATAAATGCAGAGTTTGTAGAACTGTTCTGTTAAGGTCATACTCTGCAGATATGTAACGCCAGTTTATTGAATTAATTTCCATGCCTATTCCAGAAATATTAATTATGGATAGAAGGTGAGTGCATTTGTTCCTTGTTAGACAATGGTTTCATGCTTTGATGGAATGAATGCATCAATGACCATGATACAGGTCTGACCAGCACAATATAAACTTCATTCAATTGCTAGCTCCAGCTTTCATATGCGCATAATGTGCACACGTATTTGCATCATTAGTAATTCATTTAGAATGACATGATCAGATATTAACAGACCGCCACACACAGTCTTGTAGAACAGTCTTTTCTAACGAAACAGCACAATTTATTTTTCTTTCAAAAAAAATCTTTTGGTTCATGTGGCTCGAGTGTTCGACTAAGTTTTCATCCCTAGCTTACCCCAACTAGCTAGGGACTAAAGATTGCTGCTATGACTGCTGTTGAAATATGTAACTGAAGTTGGATTGATGAGAATGCAATACAATTTATGAGCTTTGTTTTGATAATATCGTGTATTCTAAACTAGTAATGGCCAATTATTAAATAGTAATCCCTCAAACCATAATTAGTTTATTTCAGTTTTCACCAGTGGACACCACCAGCCATTGCATTTAGCTGGATAGCGCAGGTTACTTCATTCTTAATCCCTCAGGTTCCAAATCTGGCTTAAAACATTTTTTTTCTATTACCTGTACAGACGTGAGGGTTAAGCCTCCTTATCCTGCAATAAACCCACCCAGACCAACCGGGCTTCCACTGGTTCAAGATGGACCGGGCCATAACCCATAATAGACCCTTTTTTTTTTCAAAACATCGATCCTGTCTGGGCCCAGTGACTAGGATACCAACTAGAAGAAAATGATTGTGTCACTCTCCCCCATATCCCACCCACCAAGGACACAAATGACATAAAGTACAGTGGAACTTCATTATTAGCTTTGCACCGCAGGCACAAGGAGATGAGATAGTGCATCTTGTAGAATACAACATGATGCTTAAACTAATATTATATCATCATGTGTCAATATAACAATGTCACTTGCGATGTACTTGTGCCAATATTGTTCTTCAAATGGTTTTCCTAGAAAAAATAACTATTTTAATATTACAAAACATCCCCGTGACAGAGTGACCTGCAGGAAGCCACCAGGCCACCATGCAGCAAAGGGCCATCAAATAGATTTCTTATAATAATAACCATAAGGATTGTTTAATCCTTTTCTAAAACTTAAATGGTCTTCGCAACAAAATAATAATGGTCTGAAAGAGACCAAAGTGTAGTTTTAACACCCATGCTACTTAGACAGGTCTAATTTCTTCAAACCATCCAAAATGATCCTGCAAAAGACTATAAAGGGGGAAATCAGAGCAACAGTGTATACCTGTAGCAGTGCCAACTGGGCTGACAGTGTTGTTGCTTCTGTTTGCAGGGTTTGCACCTTGCGCTCAAGTTCAGCAATATATCGCATTTTCCTTTCCTTTGATCTTGCCGCAGATTGTCTGTTAGCCCAAATCCTACCAGATGTTCCATATCACGAATCAGAATCAGCATAGGCATGATATCATGTGCGTCAATGCATGACACGAAATCACTTGATTTTCAAGGCGACAGATGGTGGCAGTAATAGGGAATCAGGTTCCTTTTAAACTCTTCCCCACTTGCCAAGATCTAGATCTATCTTTCTTTTCACACAATTTACTCTCTAAAACGACTCTTGAGAAATTATTTTTTTGCACTGATACATACTTACAGAGTTTCTTCCCTAAGGTAATAATCACCCCCCACAAGAAATTCGCACAGGCAATGCAACATTTGCTATGAGACATGTAATTAAACAAACTACGAATACATTTCAAAAACAAATCTAGACTAATACAACAAAACTAACAAGAAAAAATCGCCTACTGTAAAATAACAAATTTTCACAAGAACAAACAGAAAGCTAATGTAAAAAAAGATGACACCTTTTCGCCCTCTTGGGATCGACGAGAGCAAGCTCGGCGAGCTTGGCCGCGGACACGGCCTTCTTGGCCTCCGCCGACGACATCCCCTCCGTCCCGGGCGACGCCCCGACGAGCTCCTCAGCCTTGATCGACATCGACTCATCCATGGACAGGCTGTGCTGGTGCTTCGGCCTCGCTCCATGGGCGGCGGCGGCGGCCGCCGCCGCCACCGCCGCCGCGGCGCCGGCGGACGACGACTCCGCCTCCGCCTCCGACGACGCCCCGCACGTGCTGTTCAGCTTCTCCACGTCGAGGAACATGGAGAAGAGCTCCTCGTCGTTCTCGTCCGACAGCGACGGCCCGTCGCCGCCGCCGGCCGCGCACAGGTCGAGGTCCTCGGGGAGGCTCAGGATCTCGGAGTGGGCGCGCCTGTGGCCGGGGTTCCTCGTCGGGAAATCCGGCATGCGGCTGATGTCGTACTCCGCCGCCGCCGCCGCCGCCGGAGGGCCCGCCCGGCGGGTGGCCTGCGGCGGCAACCCGTCGCCGCCGTCTCCCGGGATCGGGGATTTCTCCCTGTTCAT
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| CDS seq | ATGAACAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCGCCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGATTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGAGGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGACGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTCGTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGGCGCCGCGGCGGCGGTGGCGGCGGCGGCCGCCGCCGCCGCCCATGGAGCGAGGCCGAAGCACCAGCACAGCCTGTCCATGGATGAGTCGATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTCGCCCGGGACGGAGGGGATGTCGTCGGCGGAGGCCAAGAAGGCCGTGTCCGCGGCCAAGCTCGCCGAGCTTGCTCTCGTCGATCCCAAGAGGGCGAAAAGGATTTGGGCTAACAGACAATCTGCGGCAAGATCAAAGGAAAGGAAAATGCGATATATTGCTGAACTTGAGCGCAAGGTGCAAACCCTGCAAACAGAAGCAACAACACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCTAACTACTGAGAATAGTGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTTGCAAGATGCTTTGAATGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGGTCAAATGGCGAATGGTGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCAGCTGCAACAGCTCCAGCTTCATCCTCAGGCTCAGCAGCAGCAGGTGCTGCACCCTCAGCATCAGCAGCAGCAGCCATTGCACCCTCTACAAGCGCAGCAGCTCCAGCAGGCGGCACGAGACCTCAAGATGAAATCGCCGATGGGCGGCCAGAGCCAGTGGGGAGATGGCAAGTCAGGAAGCAGCGGCAACTGA
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| Protein seq | MNREKSPIPGDGGDGLPPQATRRAGPPAAAAAAEYDISRMPDFPTRNPGHRRAHSEILSLPEDLDLCAAGGGDGPSLSDENDEELFSMFLDVEKLNSTCGASSEAEAESSSAGAAAAVAAAAAAAAHGARPKHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQMANGGGMMMNFGGMPHQFGGNQQMFQNNQAMQSMLAAHQLQQLQLHPQAQQQQVLHPQHQQQQPLHPLQAQQLQQAARDLKMKSPMGGQSQWGDGKSGSSGN |
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| Function | Transcription factor RF2a [UniProtKB/Swiss-Prot:Q69IL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_09G0338200 | OsMH63_09T0338200-mRNA-1 | Chr09 | 21913245 | 21916827 | - | maker | ||
| CDS seq | ATGAACAGGGAGAAATCCCCGATCCCGGGAGACGGCGGCGACGGGTTGCCGCCGCAGGCCACCCGCCGGGCGGGCCCTCCGGCGGCGGCGGCGGCGGCGGAGTACGACATCAGCCGCATGCCGGATTTCCCGACGAGGAACCCCGGCCACAGGCGCGCCCACTCCGAGATCCTGAGCCTCCCCGAGGACCTCGACCTGTGCGCGGCCGGCGGCGGCGACGGGCCGTCGCTGTCGGACGAGAACGACGAGGAGCTCTTCTCCATGTTCCTCGACGTGGAGAAGCTGAACAGCACGTGCGGGGCGTCGTCGGAGGCGGAGGCGGAGTCGTCGTCCGCCGGCGCCGCGGCGGCGGTGGCGGCGGCGGCCGCCGCCGCCGCCCATGGAGCGAGGCCGAAGCACCAGCACAGCCTGTCCATGGATGAGTCGATGTCGATCAAGGCTGAGGAGCTCGTCGGGGCGTCGCCCGGGACGGAGGGGATGTCGTCGGCGGAGGCCAAGAAGGCCGTGTCCGCGGCCAAGCTCGCCGAGCTTGCTCTCGTCGATCCCAAGAGGGCGAAAAGGATTTGGGCTAACAGACAATCTGCGGCAAGATCAAAGGAAAGGAAAATGCGATATATTGCTGAACTTGAGCGCAAGGTGCAAACCCTGCAAACAGAAGCAACAACACTGTCAGCCCAGTTGGCACTGCTACAGAGAGATACCAGTGGGCTAACTACTGAGAATAGTGAACTGAAGCTACGTCTGCAGACCATGGAGCAGCAAGTCCACTTGCAAGATGCTTTGAATGACACCCTGAAGTCTGAGGTTCAGCGGCTTAAGGTTGCAACCGGTCAAATGGCGAATGGTGGAGGGATGATGATGAACTTCGGTGGCATGCCACACCAATTCGGAGGCAACCAGCAGATGTTCCAGAACAACCAGGCCATGCAATCTATGCTGGCAGCACACCAGCTGCAACAGCTCCAGCTTCATCCTCAGGCTCAGCAGCAGCAGGTGCTGCACCCTCAGCATCAGCAGCAGCAGCCATTGCACCCTCTACAAGCGCAGCAGCTCCAGCAGGCGGCACGAGACCTCAAGATGAAATCGCCGATGGGCGGCCAGAGCCAGTGGGGAGATGGCAAGTCAGGAAGCAGCGGCAACTGA
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| Protein seq | MNREKSPIPGDGGDGLPPQATRRAGPPAAAAAAEYDISRMPDFPTRNPGHRRAHSEILSLPEDLDLCAAGGGDGPSLSDENDEELFSMFLDVEKLNSTCGASSEAEAESSSAGAAAAVAAAAAAAAHGARPKHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQMANGGGMMMNFGGMPHQFGGNQQMFQNNQAMQSMLAAHQLQQLQLHPQAQQQQVLHPQHQQQQPLHPLQAQQLQQAARDLKMKSPMGGQSQWGDGKSGSSGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.7827425 | 5.956089 | 10.90981 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0516200 | RBH | 0.810214 | 1.054155 | 4.579854 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g34060 | RBH | 0.471165 | 0.735068 | 1.090412 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0516200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016620 | RBH | 0.375626 | 6.774054 | 3.292215 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016610 | RBH | 0.117499 | 0.996496 | 2.361897 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016850 | RBH | 0.683026 | 5.458254 | 4.322593 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016600 | RBH | 0.074169 | 0.212282 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016730 | RBH | 5.779161 | 5.732906 | 8.106854 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0432900 | RBH | 6.2992235 | 21.0666475 | 51.772169 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016600 | RBH | 0.254430 | 0.891446 | 0.798846 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0325300 | RBH | 7.7856415 | 5.5624385 | 19.112306 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016600 | RBH | 0.000000 | 0.205219 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016400 | RBH | 0.777907 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016510 | RBH | 5.082809 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016360 | RBH | 0.415362 | 0.0 | 0.537006 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016480 | RBH | 0.229213 | 3.216699 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016920 | RBH | 0.881568 | 4.272596 | 1.530270 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016710 | RBH | 0.238338 | 8.500997 | 6.166643 |
| Os XI: R9311 | R9311 | AGIS | R9311C09g32526 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_09g0211000 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_09g0210800 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_09g0197700 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_09g0212200 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0917333000.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0931463800.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_034906 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0928333200.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0930072800.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0921745000.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0925904800.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0926104800.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0919730600.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0917901800.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0915289600.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0921922200.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0930153400.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0920320000.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0926534400.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0917300400.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0917321000.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0918259400.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0925442000.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0917799000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0919903800.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0938600800.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0925785200.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0921209000.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0916166600.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0921720800.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0923785200.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0926761800.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0923938800.01 | RBH | None | None | None |
