Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_09g0016730 | OGI:09058710 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr09:21945712-21949954 | ||||||||
| Gene Symbol | RF2A, RF2a, OsbZIP75 | ||||||||||
| DNA seq | acttgaatctatggaactgtagacaacactacaacagtacatcttggtgatgtgctaccttaccaaagaaacgaaagattttaacctggaattcttgattattcgaccatttccttactgaaccagctacagataaactcttcaactgaacatccacccaactgtatgactgaagctgaagccaacctgaacctaccgatgatgatgatgataactactcttgcacatcatcatcatctcaatgaaacagaccatctccatggttgttaaaccaccaccttacaccaaaactttggggaatttttttgtaaatttgtaaatgacgcatcagttgccgctgcttcctgacttgccatctccccactggctctggccgcccatcggcgatttcatcttgaggtctcgtgccgcctgctggagctgctgcgcttgtagagggtgcaatggctgctgctgctgatgctgagggtgcagcacctgctgctgctgagcctgaggatgaagctggagctgttgcagctggtgtgctgccagcatagattgcatggcctggttgttctggaacatctgctggttgcctccgaattggtgtggcatgccaccgaagttcatcatcatccctccaccattcgccatttgaccggttgcaaccttaagccgctgaacctcagacttcagggtgtcattcaaagctacatcaggaataaccaaatgtaagtaacaaaacagcaaaacatcaggattaaccaaatgtaagtaacaaaacagcaactcccctataaattctcttgcacgccattatcatgaaaggtgatgacaaggttgtttttagttttgaggacgacaatgttgtattgtattgagcactaaataacataaatacaaagaagaggccaaaaggaggaaaaaaaccactatatgaactaaaaatattttgttatcattgagaaattataaacttcctcttatacaggtgcttagattataggtgacagattttactaaggcaacttccaatatatgcataaacaaagatcttacaaatattaatattaaggcagtaggcctaatcacagaaaaccgtaaaggctaaaatttggcagaactagggatcaaatatatgaatattaccatcttgcaagtggacttgctgctccatggtctgcagacgtagcttcagttcactattctcagtagttagcccactggtatctctctgtcatgacaaaataacgtgcaaaaatcattaggccatccaaattcatggtttaaacaaaaattgagcatccaaaaagttaagtatgtggatgcattatctgtatccatggatagggaacaaagctctagataaatgcagagtttgtagaactgttctgttaaggtcatactctgcagatatgtaacgccagtttattgaattaatttccatgcctattccagaaatattaattatggatagaaggtgagtgcatttgttccttgttagacaatggtttcatgctttgatggaatgaatgcatcaatgaccatgatacaggtctgaccagcacaatataaacttcattcaattgctagctccagctttcatatgcgcataatgtgcacacgtatttgcatcattagtaattcatttagaatgacatgatcagatattaacagaccgccacacacagtcttgtagaacagtcttttctaacgaaacagcacaatttatttttctttcaaaaaaaatcttttggttcatgtggctcgagtgttcgactaagttttcatccctagcttaccccaactagctagggactaaagattgctgctatgactgctgttgaaatatgtaactgaagttggattgatgagaatgcaatacaatttatgagctttgttttgataatatcgtgtattctaaactagtaatggccaattattaaatagtaatccctcaaaccataattagtttatttcagttttcaccagtggacaccaccagccattgcatttagctggatagcgcaggttacttcattcttaatccctcaggttccaaatctggcttaaaacattttttttctattacctgtacagacgtgagggttaagcctccttatcctgcaataaacccacccagaccaaccgggcttccactggttcaagatggaccgggccataacccataatagacccttttttttttcaaaacatcgatcctgtctgggcccagtgactaggataccaactagaagaaaatgattgtgtcactctcccccatatcccaCccaccaaggacacaaatgacataaagtacagtggaacttcattattagctttgcaccgcaggcacaaggagatgagatagtgcatcttgtagaatacaacatgatgcttaaactaatattatatcatcatgtgtcaatataacaatgtcacttgcgatgtacttgtgccaatattgttcttcaaatggttttcctagaaaaaataactattttaatattacaaaacatccccgtgacagagtgacctgcaggaagccaccaggccaccatgcagcaaagggccatcaaatagatttcttataataataaccataaggattgtttaatccttttctaaaacttaaatggtcttcgcaacaaaataataatggtctgaaagagaccaaagtgtagttttaacacccatgctacttagacaggtctaatttcttcaaaccatccaaaatgatcctgcaaaagactataaagggggaaatcagagcaacagtgtatacctgtagcagtgccaactgggctgacagtgttgttgcttctgtttgcagggtttgcaccttgcgctcaagttcagcaatatatcgcattttcctttcctttgatcttgccgcagattgtctgttagcccaaatcctaccagatgttccatatcacgaatcagaatcagcataggcatgatatcatgtgcgtcaatgcatgacacgaaatcacttgattttcaaggcgacagatggtggcagtaatagggaatcaggttccttttaaactcttccccacttgccaagatctagatctatctttcttttcacacaatttactctctaaaacgactcttgagaaattatttttttgcactgatacatacttacagagtttcttccctaaggtaataatcaccccccacaagaaattcgcacaggcaatgcaacatttgctatgagacatgtaattAaacaaactacgaatacatttcaaaaacaaatctagactaatacaacaaaactaacaagaaaaaatcgcctactgtaaaataacaaattttcacaagaacaaacagaaagctaatgtaaaaaaagatgacaccttttcgccctcttgggatcgacgagagcaagctcggcgagcttggccgcggacacggccttcttggcctccgccgacgacatcccctccgtcccgggcgacgccccgacgagctcctcagccttgatcgacatcgactcatccatggacaggctgtgctggtgcttcggcctcgctccatgggcggcggcggcggccgccgccgccaccgccgccgcggcgccggcggacgacgactccgcctccgcctccgacgacgccccgcacgtgctgttcagcttctccacgtcgaggaacatggagaagagctcctcgtcgttctcgtccgacagcgacggcccgtcgccgccgccggccgcgcacaggtcgaggtcctcggggaggctcaggatctcggagtgggcgcgcctgtggccggggttcctcgtcgggaaatccggcatgcggctgatgtcgtactccgccgccgccgccgccgccggagggcccgcccggcgggtggcctgcggcggcaacccgtcgccgccgtctcccgggatcggggatttctccctgttcatcttctcggctccaaacgctcgcaaatctcccccaaaaaccgcaccaagattccaagaagcaaagctttaccccccaagattcagctcgagattgcgctgcgaaatgttgagccaaaatttgggcgaaagaagaggaatcggagtggggaattgggcggaaaattctcgggcaaagaggaagatctagggatcgagctgcaagaacaggaatccgagcacagggagaaggaatggaatggaatggatgggattgggaacaggagaaaaatggattgtttacctttggattcgagtgaattttcaccaattttggctctgtttatccctttggca
More
|
||||||||||
| CDS seq | atgaacagggagaaatccccgatcccgggagacggcggcgacgggttgccgccgcaggccacccgccgggcgggccctccggcggcggcggcggcggcggagtacgacatcagccgcatgccggatttcccgacgaggaaccccggccacaggcgcgcccactccgagatcctgagcctccccgaggacctcgacctgtgcgcggccggcggcggcgacgggccgtcgctgtcggacgagaacgacgaggagctcttctccatgttcctcgacgtggagaagctgaacagcacgtgcggggcgtcgtcggaggcggaggcggagtcgtcgtccgccggcgccgcggcggcggtggcggcggcggccgccgccgccgcccatggagcgaggccgaagcaccagcacagcctgtccatggatgagtcgatgtcgatcaaggctgaggagctcgtcggggcgtcgcccgggacggaggggatgtcgtcggcggaggccaagaaggccgtgtccgcggccaagctcgccgagcttgctctcgtcgatcccaagagggcgaaaaggatttgggctaacagacaatctgcggcaagatcaaaggaaaggaaaatgcgatatattgctgaacttgagcgcaaggtgcaaaccctgcaaacagaagcaacaacactgtcagcccagttggcactgctacagagagataccagtgggctaactactgagaatagtgaactgaagctacgtctgcagaccatggagcagcaagtccacttgcaagatgctttgaatgacaccctgaagtctgaggttcagcggcttaaggttgcaaccggtcaaatggcgaatggtggagggatgatgatgaacttcggtggcatgccacaccaattcggaggcaaccagcagatgttccagaacaaccaggccatgcaatctatgctggcagcacaccagctgcaacagctccagcttcatcctcaggctcagcagcagcaggtgctgcaccctcagcatcagcagcagcagccattgcaccctctacaagcgcagcagctccagcaggcggcacgagacctcaagatgaaatcgccgatgggcggccagagccagtggggagatggcaagtcaggaagcagcggcaactga
More
|
||||||||||
| Protein seq | MNREKSPIPGDGGDGLPPQATRRAGPPAAAAAAEYDISRMPDFPTRNPGHRRAHSEILSLPEDLDLCAAGGGDGPSLSDENDEELFSMFLDVEKLNSTCGASSEAEAESSSAGAAAAVAAAAAAAAHGARPKHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQMANGGGMMMNFGGMPHQFGGNQQMFQNNQAMQSMLAAHQLQQLQLHPQAQQQQVLHPQHQQQQPLHPLQAQQLQQAARDLKMKSPMGGQSQWGDGKSGSSGN |
||||||||||
| Function | Transcription factor RF2a [UniProtKB/Swiss-Prot:Q69IL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_09g0016730 | OsPr106_09g0016730.01 | Chr09 | 21945712 | 21949954 | - | NAM | ||
| CDS seq | atgaacagggagaaatccccgatcccgggagacggcggcgacgggttgccgccgcaggccacccgccgggcgggccctccggcggcggcggcggcggcggagtacgacatcagccgcatgccggatttcccgacgaggaaccccggccacaggcgcgcccactccgagatcctgagcctccccgaggacctcgacctgtgcgcggccggcggcggcgacgggccgtcgctgtcggacgagaacgacgaggagctcttctccatgttcctcgacgtggagaagctgaacagcacgtgcggggcgtcgtcggaggcggaggcggagtcgtcgtccgccggcgccgcggcggcggtggcggcggcggccgccgccgccgcccatggagcgaggccgaagcaccagcacagcctgtccatggatgagtcgatgtcgatcaaggctgaggagctcgtcggggcgtcgcccgggacggaggggatgtcgtcggcggaggccaagaaggccgtgtccgcggccaagctcgccgagcttgctctcgtcgatcccaagagggcgaaaaggatttgggctaacagacaatctgcggcaagatcaaaggaaaggaaaatgcgatatattgctgaacttgagcgcaaggtgcaaaccctgcaaacagaagcaacaacactgtcagcccagttggcactgctacagagagataccagtgggctaactactgagaatagtgaactgaagctacgtctgcagaccatggagcagcaagtccacttgcaagatgctttgaatgacaccctgaagtctgaggttcagcggcttaaggttgcaaccggtcaaatggcgaatggtggagggatgatgatgaacttcggtggcatgccacaccaattcggaggcaaccagcagatgttccagaacaaccaggccatgcaatctatgctggcagcacaccagctgcaacagctccagcttcatcctcaggctcagcagcagcaggtgctgcaccctcagcatcagcagcagcagccattgcaccctctacaagcgcagcagctccagcaggcggcacgagacctcaagatgaaatcgccgatgggcggccagagccagtggggagatggcaagtcaggaagcagcggcaactga
More
|
|||||||
| Protein seq | MNREKSPIPGDGGDGLPPQATRRAGPPAAAAAAEYDISRMPDFPTRNPGHRRAHSEILSLPEDLDLCAAGGGDGPSLSDENDEELFSMFLDVEKLNSTCGASSEAEAESSSAGAAAAVAAAAAAAAHGARPKHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQMANGGGMMMNFGGMPHQFGGNQQMFQNNQAMQSMLAAHQLQQLQLHPQAQQQQVLHPQHQQQQPLHPLQAQQLQQAARDLKMKSPMGGQSQWGDGKSGSSGN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.779161 | 5.732906 | 8.106854 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0516200 | RBH | 0.810214 | 1.054155 | 4.579854 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g34060 | RBH | 0.471165 | 0.735068 | 1.090412 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0516200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016620 | RBH | 0.375626 | 6.774054 | 3.292215 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016610 | RBH | 0.117499 | 0.996496 | 2.361897 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016850 | RBH | 0.683026 | 5.458254 | 4.322593 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016600 | RBH | 0.074169 | 0.212282 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023930 | RBH | 4.092071 | 13.214748 | 7.966068 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0338200 | RBH | 5.7827425 | 5.956089 | 10.90981 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016600 | RBH | 0.254430 | 0.891446 | 0.798846 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0325300 | RBH | 7.7856415 | 5.5624385 | 19.112306 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016600 | RBH | 0.000000 | 0.205219 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016400 | RBH | 0.777907 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016510 | RBH | 5.082809 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016360 | RBH | 0.415362 | 0.0 | 0.537006 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016480 | RBH | 0.229213 | 3.216699 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016920 | RBH | 0.881568 | 4.272596 | 1.530270 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016710 | RBH | 0.238338 | 8.500997 | 6.166643 |
