Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0069600 | OGI:02012500 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr02:4018029-4020788 | ||||||||
| Gene Symbol | OsAPL | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | AATACACGTATCAACCTGGAAATTAAGTTCCATTAACATTGTGTTTTTTGATCGACCGACATACGCGCATGCAGCCTCAGATATATCAATGAAAGCTTGTTTCTTTAGCATGCAAGAATGCCAAATATAAGTTACACATTTACACCCATGATCTTGATAATTAACACAACACACAATTACACAGAACATATTACATGCATCCTCAAAATAGATAATCTTAATTAGCATTTGGGCATCATCATCAAGCATATATATGATCGATGCACCACAATACCACAAGATCATCCTGATTAATGCCGCATTAATAATAATTTACCCCCTGTTGCTACCAATTATATATCCATTAATCCATGCATGAACTCGAGCTGTAAAACTTATTTAGCCACAGTTCGATCGATCGAGCACGAGCCAATTTAATTAATTTCCTCTGCTGTGATTAACTGGTTTAATTAGTTAATTAACTCATTAATTAATTAACTAATTATGATTACCCGTAGGATAGGTTCCTCGTCTGAGCTCCGGCCATCACCGACGGGCTCCCCAGCTGCGGCGGCCGCCGCGGCGACGGCCTCTCCAGCTTCGACGCCGCTGCCGCGACGTCGTAGCCGCCGCCCTTGCTCCCCGTCGAGTCGCCGGACATGATCGGCTTCGTCTCGTAGACGTCGGCGGCGAGGGAGTCCATGACGTCGATGCCGCCGTCCATCATCGGCGGCGGCGCCATCTGCAGCTGATGATGGCCGCCGCCGCCGCACTTCCCGGCCGGGTCGTCGTCGTCGTCGTCGTCGTCGACGCCCCACATCATCGGGCTCTTCCCGGCGCCGCCGTAATGCCTCGTCTTCGCCGCCGTCTTCCCCAGCGAGCCGCCGCCGTCGCCGCAGGCGAAGAAGCTCTCCATCGTCGACGCCGGCGGCTGCTGCTGCTGCAGGTCGAGGTGGCCGCCGCCGGCGCCGCCGTACATGTGGAGGTCTTGCAGGGAAGGGAAGCCCATGGAGCACACGTCGAGCACCGCCGCCTGGTGGTTGCCTAGGGATTTGTACCCCGCCGGGCCGCACGCCACCGCCGCCGCGACATCGCCGGCGGCGAGCGTCTGATAGGCTTTCTCCAGGATGGACTGCATGTACTTCCCCTGCGCTTCGATCCTCATCTGCAGATGCTTCTGCACCTGCATGTCACCAATTAGAATTCATGCCCAATTTTAATTTGTTGGACAATTCAAATTGTCCATATATATGCATGATGATGAGCTTTGCTAATTAGGGCATAATTATTAGCCTAATTAACTAATCTTGTAGTTATGGTAATAATTAAGTAGTATAAGTAAAGGTTCATGAGAATGTTGAGGTATGTAATTTAAGTTGTTGATGTATGCATGATGAGAAGCTAAGCTGGCTGTATGTATGCATGGCAGCATGGGAATGAAGGGCAGAAAAGTGGATAGGTAAACTTCCCTGGTGCTTTATTTGAAAGGAGAAACTTGATGAAACTTCATGGGAATTTGATGGTGCAATTTAATTTGAATGCATATGCATGTGGATGCAACGCTTTTATTTTGTTAATTACCTCTAGTTGCTCATGTAGCCTTCTTTGCACCTCCATCTGCATTCTGATGGCATCGTTCACGTTGCGGCTGAGAGATAGAATTTCACACACAAGCAAACACAAAAATGGAGTTAGGAAAGAACAAAAAAAAAAGAGTAACTGAACAAGGACTAAGAAAGAAATTAAAATCTTAAACCGGATTAATTCTACAGTACTAGTGTACTGTTACTAGTGTACTAGTGTAGGTGATCTGTGAAAAGAACTTACTCATGGTTCATGCTTCTGCCCATTATGCCTGAAGAAGATGCTGCGTTTCTTTGCATCTCCATTGCCGCGGCTGTGGAAAATTTCAAGAACAAATCAGTCGCCTCAGACTATCAGTTGCACTGGTGGTGGAAATTAAGTTATAACTTCAAATTCAAAACTGAAATCAATCACACTGCATGCTAGAAGATCTTGATTACCTTCCTTAACTGAGTGCTCGCTGAACTCCTTGTGCGGTTGCTTCCCTAACCTGAATTTCTGTTCATGATATATTCAGGAAACCAAAAACAGATTTAGTTAATCATCCAACATAAGAATATAGAATCATATAGATAGAAAGAGATCGAGGAACAAGCTAAGCTAGGAGAAAACCCTAGCTAGCTAAGGTGTGGTTAGCTAGCTAGGTTACCTGGAGATGGCTCTTGAGGTGGTAGAGGGTGAGGCCCTTCACTCCCATCACCCTCATGATCGTCTTGGGCGTCGCCTCTGCGACGACAAGACGATCATCAATTCATCGTAAGAAAGAAGAGATTAATTCTTGTTTCGATTTTTTTGGAGAGAATTGATTGAGAGATTGATGATGCGTACTGTCGGGGCCGCCGAGCTGGGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCCACCGTCCACCGGAGCCGCGGCTTGGGGTCGGTGGTGAGGACCAGGCCGGAGTCGCCCTGCACGCACATCGCCGCCGCCGCCCTGCCGCCGCCGCCGTCACCCGAGCTCACCGCGGCGCCGCCGCCGCCGCCCTTCTTCGAGCCAGGGAACATTCTTCTATGATCTCCTCTCTTCTTCTTCTCTCTCTAGATCTCTCTCGAATTAATTCTCTCTCTCTATAATAATAATAACTCTCTCTACCTCGTCGATCCTTGATCCTGCCCGATTGGAGACGACAGATTCAAGAACAAGGAATAGGGTTCGCTCGCTCTTCCTC
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| CDS seq | ATGTTCCCTGGCTCGAAGAAGGGCGGCGGCGGCGGCGCCGCGGTGAGCTCGGGTGACGGCGGCGGCGGCAGGGCGGCGGCGGCGATGTGCGTGCAGGGCGACTCCGGCCTGGTCCTCACCACCGACCCCAAGCCGCGGCTCCGGTGGACGGTGGAGCTCCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGCGGCCCCGACAAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAGAAATTCAGGTTAGGGAAGCAACCGCACAAGGAGTTCAGCGAGCACTCAGTTAAGGAAGCCGCGGCAATGGAGATGCAAAGAAACGCAGCATCTTCTTCAGGCATAATGGGCAGAAGCATGAACCATGACCGCAACGTGAACGATGCCATCAGAATGCAGATGGAGGTGCAAAGAAGGCTACATGAGCAACTAGAGGTGCAGAAGCATCTGCAGATGAGGATCGAAGCGCAGGGGAAGTACATGCAGTCCATCCTGGAGAAAGCCTATCAGACGCTCGCCGCCGGCGATGTCGCGGCGGCGGTGGCGTGCGGCCCGGCGGGGTACAAATCCCTAGGCAACCACCAGGCGGCGGTGCTCGACGTGTGCTCCATGGGCTTCCCTTCCCTGCAAGACCTCCACATGTACGGCGGCGCCGGCGGCGGCCACCTCGACCTGCAGCAGCAGCAGCCGCCGGCGTCGACGATGGAGAGCTTCTTCGCCTGCGGCGACGGCGGCGGCTCGCTGGGGAAGACGGCGGCGAAGACGAGGCATTACGGCGGCGCCGGGAAGAGCCCGATGATGTGGGGCGTCGACGACGACGACGACGACGACGACCCGGCCGGGAAGTGCGGCGGCGGCGGCCATCATCAGCTGCAGATGGCGCCGCCGCCGATGATGGACGGCGGCATCGACGTCATGGACTCCCTCGCCGCCGACGTCTACGAGACGAAGCCGATCATGTCCGGCGACTCGACGGGGAGCAAGGGCGGCGGCTACGACGTCGCGGCAGCGGCGTCGAAGCTGGAGAGGCCGTCGCCGCGGCGGCCGCCGCAGCTGGGGAGCCCGTCGGTGATGGCCGGAGCTCAGACGAGGAACCTATCCTACGGGTAA
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| Protein seq | MFPGSKKGGGGGAAVSSGDGGGGRAAAAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFSEHSVKEAAAMEMQRNAASSSGIMGRSMNHDRNVNDAIRMQMEVQRRLHEQLEVQKHLQMRIEAQGKYMQSILEKAYQTLAAGDVAAAVACGPAGYKSLGNHQAAVLDVCSMGFPSLQDLHMYGGAGGGHLDLQQQQPPASTMESFFACGDGGGSLGKTAAKTRHYGGAGKSPMMWGVDDDDDDDDPAGKCGGGGHHQLQMAPPPMMDGGIDVMDSLAADVYETKPIMSGDSTGSKGGGYDVAAAASKLERPSPRRPPQLGSPSVMAGAQTRNLSYG |
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| Function | Myb family transcription factor IPN2 [UniProtKB/Swiss-Prot:E5L8F7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0069600 | OsMH63_02T0069600-mRNA-1 | Chr02 | 4018029 | 4020788 | - | maker | ||
| CDS seq | ATGTTCCCTGGCTCGAAGAAGGGCGGCGGCGGCGGCGCCGCGGTGAGCTCGGGTGACGGCGGCGGCGGCAGGGCGGCGGCGGCGATGTGCGTGCAGGGCGACTCCGGCCTGGTCCTCACCACCGACCCCAAGCCGCGGCTCCGGTGGACGGTGGAGCTCCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGCGGCCCCGACAAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAGAAATTCAGGTTAGGGAAGCAACCGCACAAGGAGTTCAGCGAGCACTCAGTTAAGGAAGCCGCGGCAATGGAGATGCAAAGAAACGCAGCATCTTCTTCAGGCATAATGGGCAGAAGCATGAACCATGACCGCAACGTGAACGATGCCATCAGAATGCAGATGGAGGTGCAAAGAAGGCTACATGAGCAACTAGAGAAGCATCTGCAGATGAGGATCGAAGCGCAGGGGAAGTACATGCAGTCCATCCTGGAGAAAGCCTATCAGACGCTCGCCGCCGGCGATGTCGCGGCGGCGGTGGCGTGCGGCCCGGCGGGGTACAAATCCCTAGGCAACCACCAGGCGGCGGTGCTCGACGTGTGCTCCATGGGCTTCCCTTCCCTGCAAGACCTCCACATGTACGGCGGCGCCGGCGGCGGCCACCTCGACCTGCAGCAGCAGCAGCCGCCGGCGTCGACGATGGAGAGCTTCTTCGCCTGCGGCGACGGCGGCGGCTCGCTGGGGAAGACGGCGGCGAAGACGAGGCATTACGGCGGCGCCGGGAAGAGCCCGATGATGTGGGGCGTCGACGACGACGACGACGACGACGACCCGGCCGGGAAGTGCGGCGGCGGCGGCCATCATCAGCTGCAGATGGCGCCGCCGCCGATGATGGACGGCGGCATCGACGTCATGGACTCCCTCGCCGCCGACGTCTACGAGACGAAGCCGATCATGTCCGGCGACTCGACGGGGAGCAAGGGCGGCGGCTACGACGTCGCGGCAGCGGCGTCGAAGCTGGAGAGGCCGTCGCCGCGGCGGCCGCCGCAGCTGGGGAGCCCGTCGGTGATGGCCGGAGCTCAGACGAGGAACCTATCCTACGGGTAA
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| Protein seq | MFPGSKKGGGGGAAVSSGDGGGGRAAAAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFSEHSVKEAAAMEMQRNAASSSGIMGRSMNHDRNVNDAIRMQMEVQRRLHEQLEKHLQMRIEAQGKYMQSILEKAYQTLAAGDVAAAVACGPAGYKSLGNHQAAVLDVCSMGFPSLQDLHMYGGAGGGHLDLQQQQPPASTMESFFACGDGGGSLGKTAAKTRHYGGAGKSPMMWGVDDDDDDDDPAGKCGGGGHHQLQMAPPPMMDGGIDVMDSLAADVYETKPIMSGDSTGSKGGGYDVAAAASKLERPSPRRPPQLGSPSVMAGAQTRNLSYG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0069600 | OsMH63_02T0069600-mRNA-2 | Chr02 | 4018162 | 4020788 | - | maker | ||
| CDS seq | ATGTTCCCTGGCTCGAAGAAGGGCGGCGGCGGCGGCGCCGCGGTGAGCTCGGGTGACGGCGGCGGCGGCAGGGCGGCGGCGGCGATGTGCGTGCAGGGCGACTCCGGCCTGGTCCTCACCACCGACCCCAAGCCGCGGCTCCGGTGGACGGTGGAGCTCCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGCGGCCCCGACAAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAGAAATTCAGGTTAGGGAAGCAACCGCACAAGGAGTTCAGCGAGCACTCAGTTAAGGAAGCCGCGGCAATGGAGATGCAAAGAAACGCAGCATCTTCTTCAGGCATAATGGGCAGAAGCATGAACCATGACCGCAACGTGAACGATGCCATCAGAATGCAGATGGAGGTGCAAAGAAGGCTACATGAGCAACTAGAGGTGCAGAAGCATCTGCAGATGAGGATCGAAGCGCAGGGGAAGTACATGCAGTCCATCCTGGAGAAAGCCTATCAGACGCTCGCCGCCGGCGATGTCGCGGCGGCGGTGGCGTGCGGCCCGGCGGGGTACAAATCCCTAGGCAACCACCAGGCGGCGGTGCTCGACGTGTGCTCCATGGGCTTCCCTTCCCTGCAAGACCTCCACATGTACGGCGGCGCCGGCGGCGGCCACCTCGACCTGCAGCAGCAGCAGCCGCCGGCGTCGACGATGGAGAGCTTCTTCGCCTGCGGCGACGGCGGCGGCTCGCTGGGGAAGACGGCGGCGAAGACGAGGCATTACGGCGGCGCCGGGAAGAGCCCGATGATGTGGGGCGTCGACGACGACGACGACGACGACGACCCGGCCGGGAAGTGCGGCGGCGGCGGCCATCATCAGCTGCAGATGGCGCCGCCGCCGATGATGGACGGCGGCATCGACGTCATGGACTCCCTCGCCGCCGACGTCTACGAGACGAAGCCGATCATGTCCGGCGACTCGACGGGGAGCAAGGGCGGCGGCTACGACGTCGCGGCAGCGGCGTCGAAGCTGGAGAGGCCGTCGCCGCGGCGGCCGCCGCAGCTGGGGAGCCCGTCGGTGATGGCCGGAGCTCAGACGAGGAACCTATCCTACGGGTAA
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| Protein seq | MFPGSKKGGGGGAAVSSGDGGGGRAAAAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFSEHSVKEAAAMEMQRNAASSSGIMGRSMNHDRNVNDAIRMQMEVQRRLHEQLEVQKHLQMRIEAQGKYMQSILEKAYQTLAAGDVAAAVACGPAGYKSLGNHQAAVLDVCSMGFPSLQDLHMYGGAGGGHLDLQQQQPPASTMESFFACGDGGGSLGKTAAKTRHYGGAGKSPMMWGVDDDDDDDDPAGKCGGGGHHQLQMAPPPMMDGGIDVMDSLAADVYETKPIMSGDSTGSKGGGYDVAAAASKLERPSPRRPPQLGSPSVMAGAQTRNLSYG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.039566 | 2.812859 | 1.2452945 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0174000 | RBH | 0.389870 | 0.118628 | 0.344977 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07770 | RBH | 0.281275 | 0.157677 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0174000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005710 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005820 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005630 | RBH | 0.0 | 0.0 | 1.124808 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005560 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005590 | RBH | 0.000000 | 2.893980 | 0.605154 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0430700 | RBH | 0.7222275 | 1.3309005 | 0.832811 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0071700 | RBH | 1.303711 | 4.379032 | 2.0711815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005970 | RBH | 0.071914 | 0.085363 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005540 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005850 | RBH | 0.0 | 5.481122 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005780 | RBH | 0.000000 | 0.205856 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005560 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005720 | RBH | 0.0 | 0.705316 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005680 | RBH | 0.0 | 0.000000 | 0.679094 |
| Os XI: R9311 | R9311 | AGIS | R9311C02g06081 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_02g0055600 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_02g0057400 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_02g0056400 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_02g0057000 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0201937400.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0206199600.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_010592 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0205695800.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0205830600.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0202155600.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0201932600.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0201469800.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0202063600.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0202182200.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0201906600.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0201888600.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0205806600.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0201902600.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0201918400.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0201452200.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0201937800.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0201929000.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0201933800.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0203067000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0203328000.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0209128000.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0202069600.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0201873200.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0201893200.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0201919200.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0201907400.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0202101800.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0201955400.01 | RBH | None | None | None |
