Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0174000 | OGI:02012500 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:4057827-4060512 | ||||||||
| Gene Symbol | OsAPL | ||||||||||
| DNA seq | AGCATGCAAGAATGCCAAATATAAGTTACACATTTACACCCATGATCTTGATAATTAACACAACACACAATTACACAGAACATATTACATGCATCCTCAAAATAGATAATCTTAATTAGCATTTGGGCATCATCATCAAGCATATATATGATCGATGCACCACAATACCACAAGATCATCCTGATTAATGCCGCATTAATAATAATTTACCCCCTGTTGCTACCAATTATATATCCATTAATCCATGCATGAACTCGAGCTGTAAAACTTATTTAGCCACAGTTCGATCGATCGAGCACGAGCCAATTTAATTAATTTCCTCTGCTGTGATTAACTGGTTTAATTAGTTAATTAACTCATTAATTAATTAACTAATTGTGATTACCCGTAGGATAGGTTCCTCGTCTGAGCTCCGGCCATCACCGACGGGCTCCCCAGCTGCGGCGGCCGCCGCGGCGACGGCCTCTCCAGCTTCGACGCCGCCGCCGCGACGTCGTAGCCGCCGCCCTTGCTCCCCGTCGAGTCGCCGGACATGATCGGCTTCGTCTCGTAGACGTCGGCGGCGAGGGAGTCCATGACGTCGATGCCGCCGTCCATCATCGGCGGCGGCGCCATCTGCAGCTGATGATGGCCGCCGCCGCCGCACTTCCCGGCCGGGTCGTCGTCGTCGTCGTCGTCGTCGACGCCCCACATCATCGGGCTCTTCCCGGCGCCGCCGTAATGCCTCGTCTTCGCCGCCGTCTTCCCCAGCGAGCCGCCGCCGTCGCCGCAGGCGAAGAAGCTCTCCATCGTCGACGCCGGCGGCTGCTGCTGCTGCAGGTCGAGGTGGCCGCCGCCGGCGCCGCCGTACATGTGGAGGTCTTGCAGGGAAGGGAAGCCCATGGAGCACACGTCGAGCACCGCCGCCTGGTGGTTGCCTAGGGATTTGTACCCCGCCGGGCCGCACGCCACCGCCGCCGCGACATCGCCGGCGGCGAGCGTCTGATAGGCTTTCTCCAGGATGGACTGCATGTACTTCCCCTGCGCTTCGATCCTCATCTGCAGATGCTTCTGCACCTGCATGTCACCAATTAGAATTCATGCCCAATTTTAATTTGTTGGACAATTCAAATTGTCCATATATATGCATGATGATGAGCTTTGCTAATTAGGGCATAATTATTAGCCTAATTAACTAATCTTGTAGTTATGGTAATAATTAAGTAGTATAAGTAAAGGTTCATGAGAATGTTGAGGTATGTAATTTAAGTTGTTGATGTATGCATGATGAGAAGCTAAGCTGGCTGTATGTATGCATGGCAGCATGGGAATGAAGGGCAGAAAAGTGGATAGGTAAACTTCCCTGGTGCTTTATTTGAAAGGAGAAACTTGATGAAACTTCATGTGAATTTGTTGGTGCAATTTAATTTGAATGCATATGCATGTGGATGCAACGCTTTTATTTTGTTAATTACCTCTAGTTGCTCATGTAGCCTTCTTTGCACCTCCATCTGCATTCTGATGGCATCGTTCACGTTGCGGCTGAGAGAGAGAATTTCACACACAAGCAAACACAAAAATGGAGTTAGGAAAGAACAAAAAAAAAGAGTAACTGAACAAGGACTAAGAAAGAAATTAAAATCTTAAACCGGATTAATTCTACAGTACTAGTGTACTGTTACTAGTGTACTAGTGTAGGTGATCTGTGAAAAGAACTTACTCATGGTTCATGCTTCTGCCCATTATGCCTGAAGAAGATGCTGCGTTTCTTTGCATCTCCATTGCCGCGGCTGTGGAAAATTTCAAGAACAAATCAGTCGCCTCAGACTATCAGTTGCACTGGTGGTGGAAATTAAGTTATAACTTCAAATTCAAAACTGAAATCAATCACACTGCATGCTAGAAGATCTTGATTACCTTCCTTAACTGAGTGCTCGCTGAACTCCTTGTGCGGTTGCTTCCCTAACCTGAATTTCTGTTCATGATATATTCAGGAAACCAAAAACAGATTTAGTTAATCATCCAACATAAGAATATAGAATCATATAGATAGAAAGAGATCGAGGAACAAGCTAAGCTAGGAGAAAACCCTAGCTAGCTAAGGTGTGGTTAGCTAGCTAGGTTACCTGGAGATGGCTCTTGAGGTGGTAGAGGGTGAGGCCCTTCACTCCCATCACCCTCATGATCGTCTTGGGCGTCGCCTCTGCGACGACAAGACGATCATCAATTCATCGTAAGAAAGAAGAGATTAATTCTTGTTTCGATTTTTTTGGAGAGAATTGATTGAGAGATTGATGATGCGTACTGTCGGGGCCGCCGAGCTGGGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCCACCGTCCACCGGAGCCGCGGCTTGGGGTCGGTGGTGAGGACCAGGCCGGAGTCGCCCTGCACGCACATCGCCGCCGCCGCCCTGCCGCCGCCGCCGTCACCCGAGCTCACCGCGGCGCCGCCGCCGCCGCCCTTCTTCGAGCCAGGGAACATTCTTCTATGATCTCCTCTCTTCTTCTTCTCTCTCTAGATCTCTCTCGAATTAATTCTCTCTCTCTATAATAATAATAACTCTCTCTACCTCGTCGATCCTTGATCCTGCCCGATTGGAGACGACAGATTCAAGAACAAGGAATAGGGTTCGCTCGCTCTTCCTCTCTCTCTCTCTCTATCTATGGCTTGATCACACT
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| CDS seq | ATGTTCCCTGGCTCGAAGAAGGGCGGCGGCGGCGGCGCCGCGGTGAGCTCGGGTGACGGCGGCGGCGGCAGGGCGGCGGCGGCGATGTGCGTGCAGGGCGACTCCGGCCTGGTCCTCACCACCGACCCCAAGCCGCGGCTCCGGTGGACGGTGGAGCTCCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGCGGCCCCGACAAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAGGATCGAAGCGCAGGGGAAGTACATGCAGTCCATCCTGGAGAAAGCCTATCAGACGCTCGCCGCCGGCGATGTCGCGGCGGCGGTGGCGTGCGGCCCGGCGGGGTACAAATCCCTAGGCAACCACCAGGCGGCGGTGCTCGACGTGTGCTCCATGGGCTTCCCTTCCCTGCAAGACCTCCACATGTACGGCGGCGCCGGCGGCGGCCACCTCGACCTGCAGCAGCAGCAGCCGCCGGCGTCGACGATGGAGAGCTTCTTCGCCTGCGGCGACGGCGGCGGCTCGCTGGGGAAGACGGCGGCGAAGACGAGGCATTACGGCGGCGCCGGGAAGAGCCCGATGATGTGGGGCGTCGACGACGACGACGACGACGACGACCCGGCCGGGAAGTGCGGCGGCGGCGGCCATCATCAGCTGCAGATGGCGCCGCCGCCGATGATGGACGGCGGCATCGACGTCATGGACTCCCTCGCCGCCGACGTCTACGAGACGAAGCCGATCATGTCCGGCGACTCGACGGGGAGCAAGGGCGGCGGCTACGACGTCGCGGCGGCGGCGTCGAAGCTGGAGAGGCCGTCGCCGCGGCGGCCGCCGCAGCTGGGGAGCCCGTCGGTGATGGCCGGAGCTCAGACGAGGAACCTATCCTACGGGTAATCACAATTAGTTAA
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| Protein seq | MFPGSKKGGGGGAAVSSGDGGGGRAAAAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQDRSAGEVHAVHPGESLSDARRRRCRGGGGVRPGGVQIPRQPPGGGARRVLHGLPFPARPPHVRRRRRRPPRPAAAAAAGVDDGELLRLRRRRRLAGEDGGEDEALRRRREEPDDVGRRRRRRRRRPGREVRRRRPSSAADGAAADDGRRHRRHGLPRRRRLRDEADHVRRLDGEQGRRLRRRGGGVEAGEAVAAAAAAAGEPVGDGRSSDEEPILRVITIS |
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| Function | Myb family transcription factor APL [UniProtKB/Swiss-Prot:Q9SAK5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0174000 | OsNip_02t0174000-00 | Chr02 | 4058194 | 4060315 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTCCCTGGCTCGAAGAAGGGCGGCGGCGGCGGCGCCGCGGTGAGCTCGGGTGACGGCGGCGGCGGCAGGGCGGCGGCGGCGATGTGCGTGCAGGGCGACTCCGGCCTGGTCCTCACCACCGACCCCAAGCCGCGGCTCCGGTGGACGGTGGAGCTCCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGCGGCCCCGACAAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAGGATCGAAGCGCAGGGGAAGTACATGCAGTCCATCCTGGAGAAAGCCTATCAGACGCTCGCCGCCGGCGATGTCGCGGCGGCGGTGGCGTGCGGCCCGGCGGGGTACAAATCCCTAGGCAACCACCAGGCGGCGGTGCTCGACGTGTGCTCCATGGGCTTCCCTTCCCTGCAAGACCTCCACATGTACGGCGGCGCCGGCGGCGGCCACCTCGACCTGCAGCAGCAGCAGCCGCCGGCGTCGACGATGGAGAGCTTCTTCGCCTGCGGCGACGGCGGCGGCTCGCTGGGGAAGACGGCGGCGAAGACGAGGCATTACGGCGGCGCCGGGAAGAGCCCGATGATGTGGGGCGTCGACGACGACGACGACGACGACGACCCGGCCGGGAAGTGCGGCGGCGGCGGCCATCATCAGCTGCAGATGGCGCCGCCGCCGATGATGGACGGCGGCATCGACGTCATGGACTCCCTCGCCGCCGACGTCTACGAGACGAAGCCGATCATGTCCGGCGACTCGACGGGGAGCAAGGGCGGCGGCTACGACGTCGCGGCGGCGGCGTCGAAGCTGGAGAGGCCGTCGCCGCGGCGGCCGCCGCAGCTGGGGAGCCCGTCGGTGATGGCCGGAGCTCAGACGAGGAACCTATCCTACGGGTAATCACAATTAGTTAA
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| Protein seq | MFPGSKKGGGGGAAVSSGDGGGGRAAAAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQDRSAGEVHAVHPGESLSDARRRRCRGGGGVRPGGVQIPRQPPGGGARRVLHGLPFPARPPHVRRRRRRPPRPAAAAAAGVDDGELLRLRRRRRLAGEDGGEDEALRRRREEPDDVGRRRRRRRRRPGREVRRRRPSSAADGAAADDGRRHRRHGLPRRRRLRDEADHVRRLDGEQGRRLRRRGGGVEAGEAVAAAAAAAGEPVGDGRSSDEEPILRVITIS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0174000 | OsNip_02t0174000-01 | Chr02 | 4057827 | 4060512 | - | IsoSeq | ||
| CDS seq | TGTGATCAAGCCATAGATAGAGAGAGAGAGAGAGGAAGAGCGAGCGAACCCTATTCCTTGTTCTTGAATCTGTCGTCTCCAATCGGGCAGGATCAAGGATCGACG |
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| Protein seq | CDQAIDRERERGRASEPYSLFLNLSSPIGQDQGST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.389870 | 0.118628 | 0.344977 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0670300 | SBH | 1.595647 | 0.353128 | 1.263435 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07770 | RBH | 0.281275 | 0.157677 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0174000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005710 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005820 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005630 | SBH | 0.0 | 0.0 | 1.124808 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005560 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005590 | SBH | 0.000000 | 2.893980 | 0.605154 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0069600 | RBH | 1.039566 | 2.812859 | 1.2452945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005560 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0071700 | RBH | 1.303711 | 4.379032 | 2.0711815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005970 | SBH | 0.071914 | 0.085363 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005540 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005850 | SBH | 0.0 | 5.481122 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005780 | SBH | 0.000000 | 0.205856 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005560 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005720 | SBH | 0.0 | 0.705316 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005680 | SBH | 0.0 | 0.000000 | 0.679094 |
