Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g07770 | OGI:02012500 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:4058208-4060231 | ||||||||
| Gene Symbol | OsAPL | ||||||||||
| DNA seq | TTACCCGTAGGATAGGTTCCTCGTCTGAGCTCCGGCCATCACCGACGGGCTCCCCAGCTGCGGCGGCCGCCGCGGCGACGGCCTCTCCAGCTTCGACGCCGCCGCCGCGACGTCGTAGCCGCCGCCCTTGCTCCCCGTCGAGTCGCCGGACATGATCGGCTTCGTCTCGTAGACGTCGGCGGCGAGGGAGTCCATGACGTCGATGCCGCCGTCCATCATCGGCGGCGGCGCCATCTGCAGCTGATGATGGCCGCCGCCGCCGCACTTCCCGGCCGGGTCGTCGTCGTCGTCGTCGTCGTCGACGCCCCACATCATCGGGCTCTTCCCGGCGCCGCCGTAATGCCTCGTCTTCGCCGCCGTCTTCCCCAGCGAGCCGCCGCCGTCGCCGCAGGCGAAGAAGCTCTCCATCGTCGACGCCGGCGGCTGCTGCTGCTGCAGGTCGAGGTGGCCGCCGCCGGCGCCGCCGTACATGTGGAGGTCTTGCAGGGAAGGGAAGCCCATGGAGCACACGTCGAGCACCGCCGCCTGGTGGTTGCCTAGGGATTTGTACCCCGCCGGGCCGCACGCCACCGCCGCCGCGACATCGCCGGCGGCGAGCGTCTGATAGGCTTTCTCCAGGATGGACTGCATGTACTTCCCCTGCGCTTCGATCCTCATCTGCAGATGCTTCTGCACCTGCATGTCACCAATTAGAATTCATGCCCAATTTTAATTTGTTGGACAATTCAAATTGTCCATATATATGCATGATGATGAGCTTTGCTAATTAGGGCATAATTATTAGCCTAATTAACTAATCTTGTAGTTATGGTAATAATTAAGTAGTATAAGTAAAGGTTCATGAGAATGTTGAGGTATGTAATTTAAGTTGTTGATGTATGCATGATGAGAAGCTAAGCTGGCTGTATGTATGCATGGCAGCATGGGAATGAAGGGCAGAAAAGTGGATAGGTAAACTTCCCTGGTGCTTTATTTGAAAGGAGAAACTTGATGAAACTTCATGTGAATTTGTTGGTGCAATTTAATTTGAATGCATATGCATGTGGATGCAACGCTTTTATTTTGTTAATTACCTCTAGTTGCTCATGTAGCCTTCTTTGCACCTCCATCTGCATTCTGATGGCATCGTTCACGTTGCGGCTGAGAGAGAGAATTTCACACACAAGCAAACACAAAAATGGAGTTAGGAAAGAACAAAAAAAAAGAGTAACTGAACAAGGACTAAGAAAGAAATTAAAATCTTAAACCGGATTAATTCTACAGTACTAGTGTACTGTTACTAGTGTACTAGTGTAGGTGATCTGTGAAAAGAACTTACTCATGGTTCATGCTTCTGCCCATTATGCCTGAAGAAGATGCTGCGTTTCTTTGCATCTCCATTGCCGCGGCTGTGGAAAATTTCAAGAACAAATCAGTCGCCTCAGACTATCAGTTGCACTGGTGGTGGAAATTAAGTTATAACTTCAAATTCAAAACTGAAATCAATCACACTGCATGCTAGAAGATCTTGATTACCTTCCTTAACTGAGTGCTCGCTGAACTCCTTGTGCGGTTGCTTCCCTAACCTGAATTTCTGTTCATGATATATTCAGGAAACCAAAAACAGATTTAGTTAATCATCCAACATAAGAATATAGAATCATATAGATAGAAAGAGATCGAGGAACAAGCTAAGCTAGGAGAAAACCCTAGCTAGCTAAGGTGTGGTTAGCTAGCTAGGTTACCTGGAGATGGCTCTTGAGGTGGTAGAGGGTGAGGCCCTTCACTCCCATCACCCTCATGATCGTCTTGGGCGTCGCCTCTGCGACGACAAGACGATCATCAATTCATCGTAAGAAAGAAGAGATTAATTCTTGTTTCGATTTTTTTGGAGAGAATTGATTGAGAGATTGATGATGCGTACTGTCGGGGCCGCCGAGCTGGGTGACGGCGTCGACGAAGCGCTCGTGGAGCTCCACCGTCCACCGGAGCCGCGGCTTGGGGTCGGTGGTGAGGACCAGGCCGGAGTCGCCCTGCACGCACAT
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| CDS seq | ATGTGCGTGCAGGGCGACTCCGGCCTGGTCCTCACCACCGACCCCAAGCCGCGGCTCCGGTGGACGGTGGAGCTCCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGCGGCCCCGACAAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAGAAATTCAGGTTAGGGAAGCAACCGCACAAGGAGTTCAGCGAGCACTCAGTTAAGGAAGCCGCGGCAATGGAGATGCAAAGAAACGCAGCATCTTCTTCAGGCATAATGGGCAGAAGCATGAACCATGACCGCAACGTGAACGATGCCATCAGAATGCAGATGGAGGTGCAAAGAAGGCTACATGAGCAACTAGAGGTGCAGAAGCATCTGCAGATGAGGATCGAAGCGCAGGGGAAGTACATGCAGTCCATCCTGGAGAAAGCCTATCAGACGCTCGCCGCCGGCGATGTCGCGGCGGCGGTGGCGTGCGGCCCGGCGGGGTACAAATCCCTAGGCAACCACCAGGCGGCGGTGCTCGACGTGTGCTCCATGGGCTTCCCTTCCCTGCAAGACCTCCACATGTACGGCGGCGCCGGCGGCGGCCACCTCGACCTGCAGCAGCAGCAGCCGCCGGCGTCGACGATGGAGAGCTTCTTCGCCTGCGGCGACGGCGGCGGCTCGCTGGGGAAGACGGCGGCGAAGACGAGGCATTACGGCGGCGCCGGGAAGAGCCCGATGATGTGGGGCGTCGACGACGACGACGACGACGACGACCCGGCCGGGAAGTGCGGCGGCGGCGGCCATCATCAGCTGCAGATGGCGCCGCCGCCGATGATGGACGGCGGCATCGACGTCATGGACTCCCTCGCCGCCGACGTCTACGAGACGAAGCCGATCATGTCCGGCGACTCGACGGGGAGCAAGGGCGGCGGCTACGACGTCGCGGCGGCGGCGTCGAAGCTGGAGAGGCCGTCGCCGCGGCGGCCGCCGCAGCTGGGGAGCCCGTCGGTGATGGCCGGAGCTCAGACGAGGAACCTATCCTACGGGTAA
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| Protein seq | MCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFSEHSVKEAAAMEMQRNAASSSGIMGRSMNHDRNVNDAIRMQMEVQRRLHEQLEVQKHLQMRIEAQGKYMQSILEKAYQTLAAGDVAAAVACGPAGYKSLGNHQAAVLDVCSMGFPSLQDLHMYGGAGGGHLDLQQQQPPASTMESFFACGDGGGSLGKTAAKTRHYGGAGKSPMMWGVDDDDDDDDPAGKCGGGGHHQLQMAPPPMMDGGIDVMDSLAADVYETKPIMSGDSTGSKGGGYDVAAAASKLERPSPRRPPQLGSPSVMAGAQTRNLSYG |
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| Function | Myb family transcription factor IPN2 [UniProtKB/Swiss-Prot:E5L8F7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g07770 | LOC_Os02g07770.1 | Chr02 | 4058208 | 4060231 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGCGTGCAGGGCGACTCCGGCCTGGTCCTCACCACCGACCCCAAGCCGCGGCTCCGGTGGACGGTGGAGCTCCACGAGCGCTTCGTCGACGCCGTCACCCAGCTCGGCGGCCCCGACAAGGCGACGCCCAAGACGATCATGAGGGTGATGGGAGTGAAGGGCCTCACCCTCTACCACCTCAAGAGCCATCTCCAGAAATTCAGGTTAGGGAAGCAACCGCACAAGGAGTTCAGCGAGCACTCAGTTAAGGAAGCCGCGGCAATGGAGATGCAAAGAAACGCAGCATCTTCTTCAGGCATAATGGGCAGAAGCATGAACCATGACCGCAACGTGAACGATGCCATCAGAATGCAGATGGAGGTGCAAAGAAGGCTACATGAGCAACTAGAGGTGCAGAAGCATCTGCAGATGAGGATCGAAGCGCAGGGGAAGTACATGCAGTCCATCCTGGAGAAAGCCTATCAGACGCTCGCCGCCGGCGATGTCGCGGCGGCGGTGGCGTGCGGCCCGGCGGGGTACAAATCCCTAGGCAACCACCAGGCGGCGGTGCTCGACGTGTGCTCCATGGGCTTCCCTTCCCTGCAAGACCTCCACATGTACGGCGGCGCCGGCGGCGGCCACCTCGACCTGCAGCAGCAGCAGCCGCCGGCGTCGACGATGGAGAGCTTCTTCGCCTGCGGCGACGGCGGCGGCTCGCTGGGGAAGACGGCGGCGAAGACGAGGCATTACGGCGGCGCCGGGAAGAGCCCGATGATGTGGGGCGTCGACGACGACGACGACGACGACGACCCGGCCGGGAAGTGCGGCGGCGGCGGCCATCATCAGCTGCAGATGGCGCCGCCGCCGATGATGGACGGCGGCATCGACGTCATGGACTCCCTCGCCGCCGACGTCTACGAGACGAAGCCGATCATGTCCGGCGACTCGACGGGGAGCAAGGGCGGCGGCTACGACGTCGCGGCGGCGGCGTCGAAGCTGGAGAGGCCGTCGCCGCGGCGGCCGCCGCAGCTGGGGAGCCCGTCGGTGATGGCCGGAGCTCAGACGAGGAACCTATCCTACGGGTAA
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| Protein seq | MCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFSEHSVKEAAAMEMQRNAASSSGIMGRSMNHDRNVNDAIRMQMEVQRRLHEQLEVQKHLQMRIEAQGKYMQSILEKAYQTLAAGDVAAAVACGPAGYKSLGNHQAAVLDVCSMGFPSLQDLHMYGGAGGGHLDLQQQQPPASTMESFFACGDGGGSLGKTAAKTRHYGGAGKSPMMWGVDDDDDDDDPAGKCGGGGHHQLQMAPPPMMDGGIDVMDSLAADVYETKPIMSGDSTGSKGGGYDVAAAASKLERPSPRRPPQLGSPSVMAGAQTRNLSYG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.281275 | 0.157677 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0174000 | RBH | 0.389870 | 0.118628 | 0.344977 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45410 | RBH | 0.0 | 0.085743 | 0.104282 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0174000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005710 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005820 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005630 | RBH | 0.0 | 0.0 | 1.124808 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005560 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005590 | RBH | 0.000000 | 2.893980 | 0.605154 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0069600 | RBH | 1.039566 | 2.812859 | 1.2452945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0071700 | RBH | 1.303711 | 4.379032 | 2.0711815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0005970 | RBH | 0.071914 | 0.085363 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005540 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0005850 | RBH | 0.0 | 5.481122 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005780 | RBH | 0.000000 | 0.205856 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005560 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005720 | RBH | 0.0 | 0.705316 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005680 | RBH | 0.0 | 0.000000 | 0.679094 |
