Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g06090 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:3037225-3040483 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACATAAAACAGTTCACACAAACTTTACTGAAATTTCCATATATAACTACAAAGAACTAGAAAGAACAACTGACACCAGGAAGAATGCAGAAAAGTCTACAATATTATCAAGAAAAGAACATATTTGCCTTGGACCACATAGGACAGTCACCTTCCTGCCATGCCAATTTTAGGATCACATGCTCTAATTGCCAAAGTGAAATTGAAGTACTAAACATAAAATGAAAACAACGTGATAGATAACAGTTTGGCAAATGGGTACTTCAGTTGTCCTATTTAGTCATTCAACCACGAAATTCATACCTCGGGACTTCGAACGCGGTCTGTTCAAACATGCAGGGTTCGAAACATGCATTCAGTTGTGTATATATATCCTCACCGAACAGTGTAACTTTTCGCGAACAAATATTAGTTGCCAAATTCTAAGTCCAAACACTGCTGTGATGGGAGAGATCATGAAGGAGGCACCACATTCTCTGTGGAGAAGCAGGCTAGGGATGCCTTTCTCAGGTCTCGCTGCTGCTGCCTTATTGTTGCTGCTGCTCTCCATGGCCAACTCCACCATTGCATGCCTTGAGCAGGAGAAGAGCTCTCTCCTCCGGTTCCTTGCTGGGCTATCGCATGACAATGGCATCGCCATGTCGTGGCGGAATGGCATCGACTGCTGCGCGTGGGAAGGCATCACCTGCAGTGAAGACGGGGCTATAATTGAAGTCTATTTGGTTTCTAAAGGCCTAGAAGGGCAGATCTCACCATCCCTTGGAGAGCTCAGAAGCTTGCTGTACCTCAACCTGTCCTACAACTTGCTCTCCGGTGGCCTTCCTGAGGAGCTGATGTCCTCTGGCAGCATCATCGTCCTTGATGTCAGCTTCAACCGCCTCGACGGGGACCTGCAAGAGCTGAATTCATCAGTATCTGACCGGCCACTGCAGGTTCTGAATATCTCAAGCAACAGGTTTACAGGAGAATTTCCATCCACCACATGGGAGAAAATGAGGAGCCTGGTTGCAATCAACGCCAGCAACAACAGTTTTACTGGGCAGATAGCTTCCTCTTTCTGTACCGGCTTGCCATCCTTCGCCATGCTTGATGTTAGCTACAACCAGTTCAGTGGCAGCATCCCCCCTGGAATAGGGAAATGCACTGCCCTTAAAGTGCTCAAGGCTGGTCACAACAACATCAGTGGAGCCCTCCCAGATGATCTCTTCCATGCCACATCACTAGAGTGCCTCTCTTTTCCTAACAATGATTTGCAAGGAACAATTGATGGTGTACTCATGATAAAGCTCAGCAATCTGGTTTTTCTTGATCTTGCGTGGAACAGATTCAGTGGCACAATACCAGATTCTATAGGCAAGCTGAAGAGACTACAGGAGTTTCACATGAACAACAACAACATATCTGGGGAGCTGCCATCATCCTTGGGTGATTGCACAAATGTAATCACCATCAACCTTGAAAATAACAAGTTGGCAGGAGAGCTTTCTAAGGTTAACTTCTCCAACCTACACAATCTGCAAGCTTTGGGCCTTTCCTCGAATTACTTCACCGGCACGATTCCAGATAGCATCTACTCATGCGGTACTTTAACTTGGTTGAGGTTATCTCGCAATAAGCTTCAAGGTCAGTTGACGGAGAAATTAGAAAATTTGAAATCCCTTACCTTCGTATCTCTTTCCTACAACAATTTTACAAATATCACAGGTTCACTTCACATACTCAAGAGCTTAAGAAACCTCACTACCTTGCTAATTGGGAGTAATTTCATACATGAAGCTATGCCAGAGGACGAAACAATTGATGGTTTTGAGAATCTTCATGTTCTTGCCATAAATAACTGCGCACTGACTGGAAAAATACCTAATTGGCTCTCAAAGCTAAAAAAGTTGGAACTTCTACTTTTACACAACAATCAACTCAGTGGACCAATACCAACCTGGATCAATAGCCTAAACTTCCTTAAGTATATAGACTTATCCAATAATAGCCTTATAGGGGACATACCAACAGCACTGATGGAGATGCCGATGCTAAAATCCGACAAGATTGAAGATCACCCAGATGGCCCAAGAGTCTCCCCGTTCACAATTTATGTGGGTGTATCTTTGTGTTTTCAGTACCGTGCAGCTAGTGCATTCCCCAAAATGTTGAATCTAGGTAATAACAAATTAAGTGGTCTGATCCCTGTGGAGATTGGTCAGTTGAAAGCACTGCTTTCACTCAACTTGAGCTTCAACAATTTACATGGGGAGATCCCCCAATCGATCAGTGACATCAAGAATCTGATGGGGCTAGACCTGTCTTCCAACCATCTGACAGGTGCAATCCCATCGGCACTGGTGAACCTTCACTTCCTTTCTGAATTCAACGTTTCCTACAATGACCTTCAAGGGCCTGTACCAATTGGAGGCCAGTTCAGCACATTTCCAAGTTCTAGTTTTGCTGGTAACCCAAAGCTATGCAGCCCAATGCTTGTACAGCATTGCAATTTGGCAGAAGCAGCTCCAACCTCCCCTACCTCCACAAAGCAGTATATTGACAAGGTTGTCTTTGCAATTGGATTTGGTGTGTTCTTTGGAATAGGTGTGCTATATGATCAGACAATCATATCCAGATATTTTGGCTAAAGCAGTTCCAATAGAGACAGTCAATAGTGTGTTCTAGCTTCTTCTTTTTAAAGATAATGGAAGCTTTTATTGAACTCAGCAAATTATATCGAGGAGATACGAGAGCACACTCTCGCTCTCTACATGTGTTCTGGCTTAGTGGCCTGTAATGCAATTTTGTAGTTTACTCGAGTGATTTTCACATTTCACTTAGCAAGGCCAAACTCTTTGATGTTCTAGTGAACTTCAGTTGGTACAGTCTGCTCCAACAAGTAGAAAGAAGTAAACTGAAATCTGTCAGTAGATGAGAGTCAAGTGAAACTGTGAAAGTTTTACGTGAATGTAAATGCTCCTCCATTAATTTGCGACTACATTTAGAAATACTTCTCTGAAATTTGGCAAGAGAGGGGATCACAAGTCTGAAACTAACGAACACTGCAATACCGTGATCGACGCGAATACGCGATAGATCTGGCCGAGGCGCCGAGCTATTCGCTGGGCGGTTGTGGAGGATCCCTTCCTGGACGCGGCTCAAATCAGGTGGGGGAGAAGAAGACAAGGCTAACCTCGAGTCCTCCGCTTCTGATCGAGAAGAGCATCTCCGCTACGCCTTCGTCTCGCTTCGGCTGCCGGCGGCAGTGCACGGCGACGAC
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| CDS seq | ATGGGTACTTCAGTTGTCCTATTTAGTCATTCAACCACGAAATTCATACCTCGGGACTTCGAACGCGGTCTGTTCAAACATGCAGGGTTCGAAACATGCATTCAGTTGTGTATATATATCCTCACCGAACAGTGTAACTTTTCGCGAACAAATATTAGTTGCCAAATTCTAAGTCCAAACACTGCTGTGATGGGAGAGATCATGAAGGAGGCACCACATTCTCTGTGGAGAAGCAGGCTAGGGATGCCTTTCTCAGGTCTCGCTGCTGCTGCCTTATTGTTGCTGCTGCTCTCCATGGCCAACTCCACCATTGCATGCCTTGAGCAGGAGAAGAGCTCTCTCCTCCGGTTCCTTGCTGGGCTATCGCATGACAATGGCATCGCCATGTCGTGGCGGAATGGCATCGACTGCTGCGCGTGGGAAGGCATCACCTGCAGTGAAGACGGGGCTATAATTGAAGTCTATTTGGTTTCTAAAGGCCTAGAAGGGCAGATCTCACCATCCCTTGGAGAGCTCAGAAGCTTGCTGTACCTCAACCTGTCCTACAACTTGCTCTCCGGTGGCCTTCCTGAGGAGCTGATGTCCTCTGGCAGCATCATCGTCCTTGATGTCAGCTTCAACCGCCTCGACGGGGACCTGCAAGAGCTGAATTCATCAGTATCTGACCGGCCACTGCAGGTTCTGAATATCTCAAGCAACAGGTTTACAGGAGAATTTCCATCCACCACATGGGAGAAAATGAGGAGCCTGGTTGCAATCAACGCCAGCAACAACAGTTTTACTGGGCAGATAGCTTCCTCTTTCTGTACCGGCTTGCCATCCTTCGCCATGCTTGATGTTAGCTACAACCAGTTCAGTGGCAGCATCCCCCCTGGAATAGGGAAATGCACTGCCCTTAAAGTGCTCAAGGCTGGTCACAACAACATCAGTGGAGCCCTCCCAGATGATCTCTTCCATGCCACATCACTAGAGTGCCTCTCTTTTCCTAACAATGATTTGCAAGGAACAATTGATGGTGTACTCATGATAAAGCTCAGCAATCTGGTTTTTCTTGATCTTGCGTGGAACAGATTCAGTGGCACAATACCAGATTCTATAGGCAAGCTGAAGAGACTACAGGAGTTTCACATGAACAACAACAACATATCTGGGGAGCTGCCATCATCCTTGGGTGATTGCACAAATGTAATCACCATCAACCTTGAAAATAACAAGTTGGCAGGAGAGCTTTCTAAGGTTAACTTCTCCAACCTACACAATCTGCAAGCTTTGGGCCTTTCCTCGAATTACTTCACCGGCACGATTCCAGATAGCATCTACTCATGCGGTACTTTAACTTGGTTGAGGTTATCTCGCAATAAGCTTCAAGGTCAGTTGACGGAGAAATTAGAAAATTTGAAATCCCTTACCTTCGTATCTCTTTCCTACAACAATTTTACAAATATCACAGGTTCACTTCACATACTCAAGAGCTTAAGAAACCTCACTACCTTGCTAATTGGGAGTAATTTCATACATGAAGCTATGCCAGAGGACGAAACAATTGATGGTTTTGAGAATCTTCATGTTCTTGCCATAAATAACTGCGCACTGACTGGAAAAATACCTAATTGGCTCTCAAAGCTAAAAAAGTTGGAACTTCTACTTTTACACAACAATCAACTCAGTGGACCAATACCAACCTGGATCAATAGCCTAAACTTCCTTAAGTATATAGACTTATCCAATAATAGCCTTATAGGGGACATACCAACAGCACTGATGGAGATGCCGATGCTAAAATCCGACAAGATTGAAGATCACCCAGATGGCCCAAGAGTCTCCCCGTTCACAATTTATGTGGGTGTATCTTTGTGTTTTCAGTACCGTGCAGCTAGTGCATTCCCCAAAATGTTGAATCTAGGTAATAACAAATTAAGTGGTCTGATCCCTGTGGAGATTGGTCAGTTGAAAGCACTGCTTTCACTCAACTTGAGCTTCAACAATTTACATGGGGAGATCCCCCAATCGATCAGTGACATCAAGAATCTGATGGGGCTAGACCTGTCTTCCAACCATCTGACAGGTGCAATCCCATCGGCACTGGTGAACCTTCACTTCCTTTCTGAATTCAACGTTTCCTACAATGACCTTCAAGGGCCTGTACCAATTGGAGGCCAGTTCAGCACATTTCCAAGTTCTAGTTTTGCTGGTAACCCAAAGCTATGCAGCCCAATGCTTGTACAGCATTGCAATTTGGCAGAAGCAGCTCCAACCTCCCCTACCTCCACAAAGCAGTATATTGACAAGGTTGTCTTTGCAATTGGATTTGGTGTGTTCTTTGGAATAGGTGTGCTATATGATCAGACAATCATATCCAGATATTTTGGCTAA
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| Protein seq | MGTSVVLFSHSTTKFIPRDFERGLFKHAGFETCIQLCIYILTEQCNFSRTNISCQILSPNTAVMGEIMKEAPHSLWRSRLGMPFSGLAAAALLLLLLSMANSTIACLEQEKSSLLRFLAGLSHDNGIAMSWRNGIDCCAWEGITCSEDGAIIEVYLVSKGLEGQISPSLGELRSLLYLNLSYNLLSGGLPEELMSSGSIIVLDVSFNRLDGDLQELNSSVSDRPLQVLNISSNRFTGEFPSTTWEKMRSLVAINASNNSFTGQIASSFCTGLPSFAMLDVSYNQFSGSIPPGIGKCTALKVLKAGHNNISGALPDDLFHATSLECLSFPNNDLQGTIDGVLMIKLSNLVFLDLAWNRFSGTIPDSIGKLKRLQEFHMNNNNISGELPSSLGDCTNVITINLENNKLAGELSKVNFSNLHNLQALGLSSNYFTGTIPDSIYSCGTLTWLRLSRNKLQGQLTEKLENLKSLTFVSLSYNNFTNITGSLHILKSLRNLTTLLIGSNFIHEAMPEDETIDGFENLHVLAINNCALTGKIPNWLSKLKKLELLLLHNNQLSGPIPTWINSLNFLKYIDLSNNSLIGDIPTALMEMPMLKSDKIEDHPDGPRVSPFTIYVGVSLCFQYRAASAFPKMLNLGNNKLSGLIPVEIGQLKALLSLNLSFNNLHGEIPQSISDIKNLMGLDLSSNHLTGAIPSALVNLHFLSEFNVSYNDLQGPVPIGGQFSTFPSSSFAGNPKLCSPMLVQHCNLAEAAPTSPTSTKQYIDKVVFAIGFGVFFGIGVLYDQTIISRYFG |
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| Function | Receptor-like protein 3 [UniProtKB/Swiss-Prot:Q9SHI4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g06090 | LOC_Os02g06090.1 | Chr02 | 3037225 | 3040483 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTACTTCAGTTGTCCTATTTAGTCATTCAACCACGAAATTCATACCTCGGGACTTCGAACGCGGTCTGTTCAAACATGCAGGGTTCGAAACATGCATTCAGTTGTGTATATATATCCTCACCGAACAGTGTAACTTTTCGCGAACAAATATTAGTTGCCAAATTCTAAGTCCAAACACTGCTGTGATGGGAGAGATCATGAAGGAGGCACCACATTCTCTGTGGAGAAGCAGGCTAGGGATGCCTTTCTCAGGTCTCGCTGCTGCTGCCTTATTGTTGCTGCTGCTCTCCATGGCCAACTCCACCATTGCATGCCTTGAGCAGGAGAAGAGCTCTCTCCTCCGGTTCCTTGCTGGGCTATCGCATGACAATGGCATCGCCATGTCGTGGCGGAATGGCATCGACTGCTGCGCGTGGGAAGGCATCACCTGCAGTGAAGACGGGGCTATAATTGAAGTCTATTTGGTTTCTAAAGGCCTAGAAGGGCAGATCTCACCATCCCTTGGAGAGCTCAGAAGCTTGCTGTACCTCAACCTGTCCTACAACTTGCTCTCCGGTGGCCTTCCTGAGGAGCTGATGTCCTCTGGCAGCATCATCGTCCTTGATGTCAGCTTCAACCGCCTCGACGGGGACCTGCAAGAGCTGAATTCATCAGTATCTGACCGGCCACTGCAGGTTCTGAATATCTCAAGCAACAGGTTTACAGGAGAATTTCCATCCACCACATGGGAGAAAATGAGGAGCCTGGTTGCAATCAACGCCAGCAACAACAGTTTTACTGGGCAGATAGCTTCCTCTTTCTGTACCGGCTTGCCATCCTTCGCCATGCTTGATGTTAGCTACAACCAGTTCAGTGGCAGCATCCCCCCTGGAATAGGGAAATGCACTGCCCTTAAAGTGCTCAAGGCTGGTCACAACAACATCAGTGGAGCCCTCCCAGATGATCTCTTCCATGCCACATCACTAGAGTGCCTCTCTTTTCCTAACAATGATTTGCAAGGAACAATTGATGGTGTACTCATGATAAAGCTCAGCAATCTGGTTTTTCTTGATCTTGCGTGGAACAGATTCAGTGGCACAATACCAGATTCTATAGGCAAGCTGAAGAGACTACAGGAGTTTCACATGAACAACAACAACATATCTGGGGAGCTGCCATCATCCTTGGGTGATTGCACAAATGTAATCACCATCAACCTTGAAAATAACAAGTTGGCAGGAGAGCTTTCTAAGGTTAACTTCTCCAACCTACACAATCTGCAAGCTTTGGGCCTTTCCTCGAATTACTTCACCGGCACGATTCCAGATAGCATCTACTCATGCGGTACTTTAACTTGGTTGAGGTTATCTCGCAATAAGCTTCAAGGTCAGTTGACGGAGAAATTAGAAAATTTGAAATCCCTTACCTTCGTATCTCTTTCCTACAACAATTTTACAAATATCACAGGTTCACTTCACATACTCAAGAGCTTAAGAAACCTCACTACCTTGCTAATTGGGAGTAATTTCATACATGAAGCTATGCCAGAGGACGAAACAATTGATGGTTTTGAGAATCTTCATGTTCTTGCCATAAATAACTGCGCACTGACTGGAAAAATACCTAATTGGCTCTCAAAGCTAAAAAAGTTGGAACTTCTACTTTTACACAACAATCAACTCAGTGGACCAATACCAACCTGGATCAATAGCCTAAACTTCCTTAAGTATATAGACTTATCCAATAATAGCCTTATAGGGGACATACCAACAGCACTGATGGAGATGCCGATGCTAAAATCCGACAAGATTGAAGATCACCCAGATGGCCCAAGAGTCTCCCCGTTCACAATTTATGTGGGTGTATCTTTGTGTTTTCAGTACCGTGCAGCTAGTGCATTCCCCAAAATGTTGAATCTAGGTAATAACAAATTAAGTGGTCTGATCCCTGTGGAGATTGGTCAGTTGAAAGCACTGCTTTCACTCAACTTGAGCTTCAACAATTTACATGGGGAGATCCCCCAATCGATCAGTGACATCAAGAATCTGATGGGGCTAGACCTGTCTTCCAACCATCTGACAGGTGCAATCCCATCGGCACTGGTGAACCTTCACTTCCTTTCTGAATTCAACGTTTCCTACAATGACCTTCAAGGGCCTGTACCAATTGGAGGCCAGTTCAGCACATTTCCAAGTTCTAGTTTTGCTGGTAACCCAAAGCTATGCAGCCCAATGCTTGTACAGCATTGCAATTTGGCAGAAGCAGCTCCAACCTCCCCTACCTCCACAAAGCAGTATATTGACAAGGTTGTCTTTGCAATTGGATTTGGTGTGTTCTTTGGAATAGGTGTGCTATATGATCAGACAATCATATCCAGATATTTTGGCTAA
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| Protein seq | MGTSVVLFSHSTTKFIPRDFERGLFKHAGFETCIQLCIYILTEQCNFSRTNISCQILSPNTAVMGEIMKEAPHSLWRSRLGMPFSGLAAAALLLLLLSMANSTIACLEQEKSSLLRFLAGLSHDNGIAMSWRNGIDCCAWEGITCSEDGAIIEVYLVSKGLEGQISPSLGELRSLLYLNLSYNLLSGGLPEELMSSGSIIVLDVSFNRLDGDLQELNSSVSDRPLQVLNISSNRFTGEFPSTTWEKMRSLVAINASNNSFTGQIASSFCTGLPSFAMLDVSYNQFSGSIPPGIGKCTALKVLKAGHNNISGALPDDLFHATSLECLSFPNNDLQGTIDGVLMIKLSNLVFLDLAWNRFSGTIPDSIGKLKRLQEFHMNNNNISGELPSSLGDCTNVITINLENNKLAGELSKVNFSNLHNLQALGLSSNYFTGTIPDSIYSCGTLTWLRLSRNKLQGQLTEKLENLKSLTFVSLSYNNFTNITGSLHILKSLRNLTTLLIGSNFIHEAMPEDETIDGFENLHVLAINNCALTGKIPNWLSKLKKLELLLLHNNQLSGPIPTWINSLNFLKYIDLSNNSLIGDIPTALMEMPMLKSDKIEDHPDGPRVSPFTIYVGVSLCFQYRAASAFPKMLNLGNNKLSGLIPVEIGQLKALLSLNLSFNNLHGEIPQSISDIKNLMGLDLSSNHLTGAIPSALVNLHFLSEFNVSYNDLQGPVPIGGQFSTFPSSSFAGNPKLCSPMLVQHCNLAEAAPTSPTSTKQYIDKVVFAIGFGVFFGIGVLYDQTIISRYFG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.133595 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0155400 | RBH | 0.0 | 0.0 | 0.658335 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0155400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004310 | RBH | 0.053326 | 2.659473 | 0.663938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004260 | SBH | 0.069201 | 0.845967 | 0.776244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004170 | SBH | 0.137843 | 1.557139 | 0.736899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004250 | RBH | 0.061636 | 0.022630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004280 | SBH | 1.714308 | 1.291915 | 1.010436 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0051400 | RBH | 0.205134 | 0.1559145 | 2.446795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0053700 | RBH | 0.9190825 | 0.8928545 | 5.3189615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004620 | SBH | 0.050025 | 0.093740 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003980 | SBH | 0.070042 | 4.234505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004060 | SBH | 0.292437 | 2.052631 | 0.572981 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004010 | SBH | 0.630622 | 3.130005 | 0.941510 |
