Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g06030 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:3005602-3007978 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGCCAAAATATCTGGGCATTATTAGCTGATCATATAGCACACCTACTCCAAAGAATACACCAAATGCAATTGCAAAGACAACCTGGTCGATATACTGCTTTCTTGAGGTAGGGGAAGTTGGAGCTGCTTCTGCCAAATTGCAATGGTGTACAAGCATAGGGCTACATAGCTTTGGGTTCCCAGCAAAACTAGAACTTGGAAATGTGCTGAACTGGCCTCCAATTGGTACAGGCCCTTCAAGGTCATTGTAGGAAATGTTGAATTCAGAAAGGAAGTGAAGGCTCACCAGTGCTGATGGGATTGCACCTGTAAGATGGTTGTATGACAGGTCTAGAACCATCAGATTTCTGAGGTTGGTCACCAATTGTGGGATTTCCCCGTTTAGGTTGTTGAAGCTCAAGTTGAGTGAAACGAGTGCTTTTAACTCACCAATCTCCATGGGGATGGCACCAGTTAATTTGTTGTTACCTAGATTCAACATTTTAGGGAAAGCGGTAATTGTACGGTACTGAAAACACATACAACCTACATAAACTGGAAACTGAAAGAGTCTTGGGTCTGTGTAATCTGCAATCTTGTCTGATTTTAGCATTGGCATCTCCGTTAGTGCTGCCGGTATTTCTCCTGAAAGGCTATTATTGGATATGTCTACATACTTGAGGAAGTTTAGGCTATTGATCCAGGTTGGTATAGGTCCACTGAGTTGATTGTTGTATAAAACTAAAACCTGCAAATTTCTGAGCTTTGAGAACCAATTAGGTACTTTTCCAGACAGTGCACAGTCGTTTATCCCAAGACCTAGAATATTCTTGAAACCATCAATTTTTTCATCCTGTGGCATAGCTTCATTCTTGAAGTTGCTCCCCATAAACAAGACACTGAGGTTCCTTAAGCTCTTGAGTATGTGAAGGGTATTAGTTATGTTTGTAAAATTGTTGTAGGAAATAGATAAGAATATGATAGACTTCAGATTTCCTATATTCTTTGTCAGCTGGCCATGAAGCCTATTGGCAGATAGGCGCAACGAAGTCAAATTGCTGCATGAGTAGATGCTCTCTGGAATGGTGCCGGTGAAATCATTCCCGGAAAAATCTAATGCTTTCAGATTGGGCAGGTTGGAGAAGTTAACATTGGCAAGCTCTCCTGTGAACTTGTTGCTGCTGAGGTTGATGGTTACTAGATATGTGCACTCGCCCAAGGATGACGGCAGCTCTCCAGATAAGTTGTTGCTGCTCATGTGAAGCTCCTCTAGCCTCTTTAGCTGGCCAATAGAATTTGGGATCTTGCCACTGGATCTATTCCAGCCAAGATCAACAAAAACAAGATTACTGAGCTTTATTATGAGTGCACCATTAATTGTTCCTTGCAAACCATTGTTAGCAAAGGAGAGGTACTCCAATGAAGTGGCACTGAAGAGATCATCTGGCAGGGTCCCAATGATGTTGTTGTGACCAGCCTTTAGCATTCTAAGGGAACAGCATTTACCTATCCCATGGGGGATGTTGCCACTGAATTGGTTGTAAGAAAGATCAAGCATAGCAAAGGATGATGAGCTGATACAAAAAGTGGAAGGTATGTAGCCAGTAAAACTGTTGTTGCTCGCATTGATTGCAAACAGGTTGCTCATTTTCTCCCATGTGGTGGACGGAAATGCTCCCGTAAACAGGTTGCTCGAGATATTCAGTACCTGGAGAGGCCGGTCAGGTGATGACGAATTCAGCTCATGTAGTTCTCCATCTAGGCGGTTGAAGCTGACATCAAGGACGACGATGCTGCTAGTGGATATCAGCTCTGATGGAAGCCCATCGGAGAGCAAGTTGTACGACAGGTTGAGTCGCGACAAGCTGGTAAGCTCGCTCAGGGATGATGAGATGCACCCTTGTAGGCCTCTTGAGGCCAGTAATAGCTCAGTTACTGCACCATCTTCTCCACAGATTATCCCTTCCCAGGTGCAACAATTTGGACTATTCTGCCATGACACGGCGAGGCCACCATCTTGTGATAACCCAGCGAGGAACCGGAGGAGGGAATGTCTCTCCTGCTTGGTGCATGAATCAACAGGAGAGATGAAAGTCAGCAGCAGCAACACAAGAGCAGGATCAAAGAAATTTATGCAAAACCTTCTGGTTTTGTTGCTGCGCCAAGACTGCGGCTTCATGGTTTGTATCTTTTGGAAGCTGTGACAGAATAGTGAGCTTGATATACCTAGGTAGGCTGGTATTGTGTGCAAAACCACAGTTCCTGAGCTATATTGGCAAAGCATCGAAGAGTTATAAGCTGATGGAGTGTTGACCTATGAGTTTAGTTGCTTCTACCTCACTGGCTTGGTACTGTGCTTAGGTTTGGGAATTCCGTCTTTCTGTTTTCTTTTCCCA
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| CDS seq | ATGCTTTGCCAATATAGCTCAGGAACTGTGGTTTTGCACACAATACCAGCCTACCTAGGTATATCAAGCTCACTATTCTGTCACAGCTTCCAAAAGATACAAACCATGAAGCCGCAGTCTTGGCGCAGCAACAAAACCAGAAGGTTTTGCATAAATTTCTTTGATCCTGCTCTTGTGTTGCTGCTGCTGACTTTCATCTCTCCTGTTGATTCATGCACCAAGCAGGAGAGACATTCCCTCCTCCGGTTCCTCGCTGGGTTATCACAAGATGGTGGCCTCGCCGTGTCATGGCAGAATAGTCCAAATTGTTGCACCTGGGAAGGGATAATCTGTGGAGAAGATGGTGCAGTAACTGAGCTATTACTGGCCTCAAGAGGCCTACAAGGGTGCATCTCATCATCCCTGAGCGAGCTTACCAGCTTGTCGCGACTCAACCTGTCGTACAACTTGCTCTCCGATGGGCTTCCATCAGAGCTGATATCCACTAGCAGCATCGTCGTCCTTGATGTCAGCTTCAACCGCCTAGATGGAGAACTACATGAGCTGAATTCGTCATCACCTGACCGGCCTCTCCAGGTACTGAATATCTCGAGCAACCTGTTTACGGGAGCATTTCCGTCCACCACATGGGAGAAAATGAGCAACCTGTTTGCAATCAATGCGAGCAACAACAGTTTTACTGGCTACATACCTTCCACTTTTTGTATCAGCTCATCATCCTTTGCTATGCTTGATCTTTCTTACAACCAATTCAGTGGCAACATCCCCCATGGGATAGGTAAATGCTGTTCCCTTAGAATGCTAAAGGCTGGTCACAACAACATCATTGGGACCCTGCCAGATGATCTCTTCAGTGCCACTTCATTGGAGTACCTCTCCTTTGCTAACAATGGTTTGCAAGGAACAATTAATGGTGCACTCATAATAAAGCTCAGTAATCTTGTTTTTGTTGATCTTGGCTGGAATAGATCCAGTGGCAAGATCCCAAATTCTATTGGCCAGCTAAAGAGGCTAGAGGAGCTTCACATGAGCAGCAACAACTTATCTGGAGAGCTGCCGTCATCCTTGGGCGAGTGCACATATCTAGTAACCATCAACCTCAGCAGCAACAAGTTCACAGGAGAGCTTGCCAATGTTAACTTCTCCAACCTGCCCAATCTGAAAGCATTAGATTTTTCCGGGAATGATTTCACCGGCACCATTCCAGAGAGCATCTACTCATGCAGCAATTTGACTTCGTTGCGCCTATCTGCCAATAGGCTTCATGGCCAGCTGACAAAGAATATAGGAAATCTGAAGTCTATCATATTCTTATCTATTTCCTACAACAATTTTACAAACATAACTAATACCCTTCACATACTCAAGAGCTTAAGGAACCTCAGTGTCTTGTTTATGGGGAGCAACTTCAAGAATGAAGCTATGCCACAGGATGAAAAAATTGATGGTTTCAAGAATATTCTAGGTCTTGGGATAAACGACTGTGCACTGTCTGGAAAAGTACCTAATTGGTTCTCAAAGCTCAGAAATTTGCAGGTTTTAGTTTTATACAACAATCAACTCAGTGGACCTATACCAACCTGGATCAATAGCCTAAACTTCCTCAAGTATGTAGACATATCCAATAATAGCCTTTCAGGAGAAATACCGGCAGCACTAACGGAGATGCCAATGCTAAAATCAGACAAGATTGCAGATTACACAGACCCAAGACTCTTTCAGTTTCCAGTTTATGTAGGTTGTATGTGTTTTCAGTACCGTACAATTACCGCTTTCCCTAAAATGTTGAATCTAGGTAACAACAAATTAACTGGTGCCATCCCCATGGAGATTGGTGAGTTAAAAGCACTCGTTTCACTCAACTTGAGCTTCAACAACCTAAACGGGGAAATCCCACAATTGGTGACCAACCTCAGAAATCTGATGGTTCTAGACCTGTCATACAACCATCTTACAGGTGCAATCCCATCAGCACTGGTGAGCCTTCACTTCCTTTCTGAATTCAACATTTCCTACAATGACCTTGAAGGGCCTGTACCAATTGGAGGCCAGTTCAGCACATTTCCAAGTTCTAGTTTTGCTGGGAACCCAAAGCTATGTAGCCCTATGCTTGTACACCATTGCAATTTGGCAGAAGCAGCTCCAACTTCCCCTACCTCAAGAAAGCAGTATATCGACCAGGTTGTCTTTGCAATTGCATTTGGTGTATTCTTTGGAGTAGGTGTGCTATATGATCAGCTAATAATGCCCAGATATTTTGGCTAA
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| Protein seq | MLCQYSSGTVVLHTIPAYLGISSSLFCHSFQKIQTMKPQSWRSNKTRRFCINFFDPALVLLLLTFISPVDSCTKQERHSLLRFLAGLSQDGGLAVSWQNSPNCCTWEGIICGEDGAVTELLLASRGLQGCISSSLSELTSLSRLNLSYNLLSDGLPSELISTSSIVVLDVSFNRLDGELHELNSSSPDRPLQVLNISSNLFTGAFPSTTWEKMSNLFAINASNNSFTGYIPSTFCISSSSFAMLDLSYNQFSGNIPHGIGKCCSLRMLKAGHNNIIGTLPDDLFSATSLEYLSFANNGLQGTINGALIIKLSNLVFVDLGWNRSSGKIPNSIGQLKRLEELHMSSNNLSGELPSSLGECTYLVTINLSSNKFTGELANVNFSNLPNLKALDFSGNDFTGTIPESIYSCSNLTSLRLSANRLHGQLTKNIGNLKSIIFLSISYNNFTNITNTLHILKSLRNLSVLFMGSNFKNEAMPQDEKIDGFKNILGLGINDCALSGKVPNWFSKLRNLQVLVLYNNQLSGPIPTWINSLNFLKYVDISNNSLSGEIPAALTEMPMLKSDKIADYTDPRLFQFPVYVGCMCFQYRTITAFPKMLNLGNNKLTGAIPMEIGELKALVSLNLSFNNLNGEIPQLVTNLRNLMVLDLSYNHLTGAIPSALVSLHFLSEFNISYNDLEGPVPIGGQFSTFPSSSFAGNPKLCSPMLVHHCNLAEAAPTSPTSRKQYIDQVVFAIAFGVFFGVGVLYDQLIMPRYFG |
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| Function | Receptor-like protein 3 [UniProtKB/Swiss-Prot:Q9SHI4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g06030 | LOC_Os02g06030.1 | Chr02 | 3005602 | 3007978 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTTTGCCAATATAGCTCAGGAACTGTGGTTTTGCACACAATACCAGCCTACCTAGGTATATCAAGCTCACTATTCTGTCACAGCTTCCAAAAGATACAAACCATGAAGCCGCAGTCTTGGCGCAGCAACAAAACCAGAAGGTTTTGCATAAATTTCTTTGATCCTGCTCTTGTGTTGCTGCTGCTGACTTTCATCTCTCCTGTTGATTCATGCACCAAGCAGGAGAGACATTCCCTCCTCCGGTTCCTCGCTGGGTTATCACAAGATGGTGGCCTCGCCGTGTCATGGCAGAATAGTCCAAATTGTTGCACCTGGGAAGGGATAATCTGTGGAGAAGATGGTGCAGTAACTGAGCTATTACTGGCCTCAAGAGGCCTACAAGGGTGCATCTCATCATCCCTGAGCGAGCTTACCAGCTTGTCGCGACTCAACCTGTCGTACAACTTGCTCTCCGATGGGCTTCCATCAGAGCTGATATCCACTAGCAGCATCGTCGTCCTTGATGTCAGCTTCAACCGCCTAGATGGAGAACTACATGAGCTGAATTCGTCATCACCTGACCGGCCTCTCCAGGTACTGAATATCTCGAGCAACCTGTTTACGGGAGCATTTCCGTCCACCACATGGGAGAAAATGAGCAACCTGTTTGCAATCAATGCGAGCAACAACAGTTTTACTGGCTACATACCTTCCACTTTTTGTATCAGCTCATCATCCTTTGCTATGCTTGATCTTTCTTACAACCAATTCAGTGGCAACATCCCCCATGGGATAGGTAAATGCTGTTCCCTTAGAATGCTAAAGGCTGGTCACAACAACATCATTGGGACCCTGCCAGATGATCTCTTCAGTGCCACTTCATTGGAGTACCTCTCCTTTGCTAACAATGGTTTGCAAGGAACAATTAATGGTGCACTCATAATAAAGCTCAGTAATCTTGTTTTTGTTGATCTTGGCTGGAATAGATCCAGTGGCAAGATCCCAAATTCTATTGGCCAGCTAAAGAGGCTAGAGGAGCTTCACATGAGCAGCAACAACTTATCTGGAGAGCTGCCGTCATCCTTGGGCGAGTGCACATATCTAGTAACCATCAACCTCAGCAGCAACAAGTTCACAGGAGAGCTTGCCAATGTTAACTTCTCCAACCTGCCCAATCTGAAAGCATTAGATTTTTCCGGGAATGATTTCACCGGCACCATTCCAGAGAGCATCTACTCATGCAGCAATTTGACTTCGTTGCGCCTATCTGCCAATAGGCTTCATGGCCAGCTGACAAAGAATATAGGAAATCTGAAGTCTATCATATTCTTATCTATTTCCTACAACAATTTTACAAACATAACTAATACCCTTCACATACTCAAGAGCTTAAGGAACCTCAGTGTCTTGTTTATGGGGAGCAACTTCAAGAATGAAGCTATGCCACAGGATGAAAAAATTGATGGTTTCAAGAATATTCTAGGTCTTGGGATAAACGACTGTGCACTGTCTGGAAAAGTACCTAATTGGTTCTCAAAGCTCAGAAATTTGCAGGTTTTAGTTTTATACAACAATCAACTCAGTGGACCTATACCAACCTGGATCAATAGCCTAAACTTCCTCAAGTATGTAGACATATCCAATAATAGCCTTTCAGGAGAAATACCGGCAGCACTAACGGAGATGCCAATGCTAAAATCAGACAAGATTGCAGATTACACAGACCCAAGACTCTTTCAGTTTCCAGTTTATGTAGGTTGTATGTGTTTTCAGTACCGTACAATTACCGCTTTCCCTAAAATGTTGAATCTAGGTAACAACAAATTAACTGGTGCCATCCCCATGGAGATTGGTGAGTTAAAAGCACTCGTTTCACTCAACTTGAGCTTCAACAACCTAAACGGGGAAATCCCACAATTGGTGACCAACCTCAGAAATCTGATGGTTCTAGACCTGTCATACAACCATCTTACAGGTGCAATCCCATCAGCACTGGTGAGCCTTCACTTCCTTTCTGAATTCAACATTTCCTACAATGACCTTGAAGGGCCTGTACCAATTGGAGGCCAGTTCAGCACATTTCCAAGTTCTAGTTTTGCTGGGAACCCAAAGCTATGTAGCCCTATGCTTGTACACCATTGCAATTTGGCAGAAGCAGCTCCAACTTCCCCTACCTCAAGAAAGCAGTATATCGACCAGGTTGTCTTTGCAATTGCATTTGGTGTATTCTTTGGAGTAGGTGTGCTATATGATCAGCTAATAATGCCCAGATATTTTGGCTAA
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| Protein seq | MLCQYSSGTVVLHTIPAYLGISSSLFCHSFQKIQTMKPQSWRSNKTRRFCINFFDPALVLLLLTFISPVDSCTKQERHSLLRFLAGLSQDGGLAVSWQNSPNCCTWEGIICGEDGAVTELLLASRGLQGCISSSLSELTSLSRLNLSYNLLSDGLPSELISTSSIVVLDVSFNRLDGELHELNSSSPDRPLQVLNISSNLFTGAFPSTTWEKMSNLFAINASNNSFTGYIPSTFCISSSSFAMLDLSYNQFSGNIPHGIGKCCSLRMLKAGHNNIIGTLPDDLFSATSLEYLSFANNGLQGTINGALIIKLSNLVFVDLGWNRSSGKIPNSIGQLKRLEELHMSSNNLSGELPSSLGECTYLVTINLSSNKFTGELANVNFSNLPNLKALDFSGNDFTGTIPESIYSCSNLTSLRLSANRLHGQLTKNIGNLKSIIFLSISYNNFTNITNTLHILKSLRNLSVLFMGSNFKNEAMPQDEKIDGFKNILGLGINDCALSGKVPNWFSKLRNLQVLVLYNNQLSGPIPTWINSLNFLKYVDISNNSLSGEIPAALTEMPMLKSDKIADYTDPRLFQFPVYVGCMCFQYRTITAFPKMLNLGNNKLTGAIPMEIGELKALVSLNLSFNNLNGEIPQLVTNLRNLMVLDLSYNHLTGAIPSALVSLHFLSEFNISYNDLEGPVPIGGQFSTFPSSSFAGNPKLCSPMLVHHCNLAEAAPTSPTSRKQYIDQVVFAIAFGVFFGVGVLYDQLIMPRYFG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.069458 | 0.070845 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0156200 | SBH | 0.250807 | 0.765182 | 1.044408 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g47760 | SBH | 0.251476 | 0.116737 | 0.056122 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0156200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004310 | SBH | 0.053326 | 2.659473 | 0.663938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004420 | RBH | 0.054000 | 0.000000 | 0.474790 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004170 | SBH | 0.137843 | 1.557139 | 0.736899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004020 | SBH | 0.031011 | 0.040793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004110 | SBH | 2.410689 | 8.209851 | 3.171613 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0051600 | SBH | 0.613752 | 0.7688675 | 1.011299 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0053900 | SBH | 1.113259 | 1.3618645 | 4.3326725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004350 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003980 | SBH | 0.070042 | 4.234505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004060 | SBH | 0.292437 | 2.052631 | 0.572981 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004010 | SBH | 0.630622 | 3.130005 | 0.941510 |
