Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g47760 | OGI:06026330 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:28905577-28909089 | ||||||||
| Gene Symbol | LRR-RLK1, OsLRR-RLK1, OsPSKR12, PSKR12 | ||||||||||
| DNA seq | CCATCACCTAAATTAGTCATCACTGTACATTACTCATTTCACCCATTCCTTCATTGTTCAGAGTTGGCCCAAATGCAAAGCCTAGCAAAAGCTCCTCATCTGGTTCCTGAAATTGGTTACAACTTGGTTCATACAGTTGATTCAGTAAATTCACACAACCATTTAGTAGCATGCTATTTCAGGCTATCCGAGAGACAAAAAAAAAACAATATGAGCAGCCATACAAAGAAGTTTAAAAGTGATTAAACCATAAATGCTGGCATCAGAATCAAATAAAAAAAATTTAAAAAAAAACTGAGTCTGTTAAGCATCTATCTTCGGTACCGCATTTGAAGGTGAGTTAGGCTTTCGGTGTGATCATCATATACCAACCGCCCAATCAAGAAGCATGCAAGCAAAGCAAGAGCGACGAGTGCTCCCAAGGTGATTCCAGTGACTAATGCACACCGTAAGTTGCGCCGCTGTGAGGTGAAGTTTTCTTTTCTTGTAGTGGGACTGCAAAGGTTACTGAGTACAGCACCACATAGCTTCGAATTCCCACTATAGCTAGAATTAAGAAATGTATCAAACTGTCCTCCAGTTGGAACTGGCCCTTCTAGTTCATTGTTAGAAACATTGAATTTAGAAAGGAAGTGCATATCAGTCAGTGCAGACGGTAGTTCACCTGTGAGCTGATTGCTTGATAAATCTAGCAATTGCAGGTTTGTGAGATTGCATATCTGCTGTGGTATTTCTCCAGATAACCTGTTAAAGCTGATATTGAAGCCGTCGAGCATTTTCAACCGACCAATCTCTGGGGGAATCACTCCTGTGAAACCATTGTTACCTAGATTCAACGCATTAGGAAAAGCGTTGAGCAAGCGGTATTGACGTGATCGTGTCCAATAAACAGGCAATTCAAGGAAATTTGGGTCCAACTGGGCAGCATTCTTTCCTAATTGTAGCATCGGCGTGTTCATCAACGCAGTTGGGATATCCCCTGTAAGACTGTTGTTTGTTATATCTAAATAGAAAAGAACAGGCAGATCACTAATCCAAAATGGTATTTTTCCAGAGAGCATATTGTTTGATAAATCCAACACCTCCAGTTTTTTGAGCTTTGATATCCAAGTGGGAATTTGTCCAACCAATCCACAGGAATCTATAGTCAGTACCCGAAGATTCTCAAAACCATCAATTGTTTCACTTTTTGATATGGTTTCACCCTTGAAGTTGGTTCCAATAAGAACGGCGGTAAGGTTTTTGCAGCTCTTGAGTATCTGAAGTGCATTTGTGATATTTGTGAGATGGTTATCGGCTATTGAAAAGAAGGACATGGACTTCAGATTGCCCATTCTTGGTGAGAGCTGGCCATGAAACTTGTTGAAAGCCAGCCGCAACGCAATTAGATTGCTGCATGAGTATATGCTTTCTGGAACTGTACCAGTGAAGTTATTAATTGAGAAATCTGCGATTCTCAAATTCAACCGGGTAAAATTGACTTTGCTAAGATCTCCCACAAATTTGTTGTTTCTGAGGCTGAGGTACCTCAGATTTGTGCAGTTACCTACGGCCGATGGCAGCTCACCAGACATGTTGTTGTTGTCCAGCCGGAGCTCCTCCAATGTGCTTAGTTGGCCAATAGAATCCGGGATGTTCCCACTGAGCCCAGTCGATCCGAGATCAAGGACAGTCAGCTTGACGAGTTTTAATATGTCAGAACCATCAAGAACTCCCTGTAAATCATTGCTAGGAAGAGACAAGTGCTCCAACGAGGTAGCACTGAAGAGTTCTTCAGGGAGAGCTCCATTAAAATTGTTGTAGCCAGCCTTGAACTCTCTCAGCTTGGAGCAATTTCCAAGCTCCGGAGGAATACTGCCACTGAATTGGTTGTAAGAAAGGTCAAGGATAGCAAGTGATGGGGAGTTGATGCAGATAGAAGATGGTATCTGTCCTGTAAAGCTGTTGTTGCTTGCATTAAGAGCAACAATATTCTTCATCGCCTCCCACAGTTTGGATGAGAACTGCCCTGTAAATAAATTGCTTGAGATATTCAGTACCTGGAGAGGAAAACCACCACTAGAGGACTGCAACTCTGGCAGAGAACCATCTAGGCGGTTGAAGCTAACGTCAAGGACGATGATGCTTCTGGAGAACAACAATTCCATCGGTAGGTTGCCATTGAGTAAGTTGTGAGACAGGTTGAGGTGCAACAGCCCAGTAAGATTGCCGAGCAATGGCGAGATGTGCCCTTGGAGGCCCTTAGCAGCCAGCAAGACATCTGTGACTGTGCCATCACTGCTGCAGGTGATGCCTTCCCATTTACAGCAGTCTGTCCTCTTCACCCATGACATGCAGAGGCTGCCATTGCCACCTTGCAAGAGACCATCTAGGAAGCCGATGAGGGAGCTCTCCTCCTGCTCCGTGCAGGAGCTGGTCGGAGAGGTAAAGGAGAGCAGAACAACAACAGCAAGGCCAAAGAACAGCGCGGCTGATTTGTGGATCTTGCCTGAAAATTGAAACGATGTATCTTGTCAGAGAAAAATTGAAACCATATATCAAACTGTATTGATCCAAACACCATGATAAAAGATGCCTGAGAGTTGTAGTGCTGAAGCCATGAGCACGAGGGTATGTGGGCCTTCAGCTTCACCCAAACGGATAAAATGTAAAATGAAGAGTAGCTGCAGAATTTTTTATTTGAGCTGAATTGGTAGCGGTACTGATTAGTGAAAAATAGTTGGCTTAAAGTAGAATTTTTGCATACCAAACAAATGGACGCAGTCAACAGATTATTTTTTTCATACAGTCTCAGTTCATGATGCCAGAAAGCGTACAGTTTTCAACACAGCGAGTCAGTGAGCCTTATGTTCTTTTATACTACTTGTTTGCATGAAGGTTTGATCTATTTGTAAAGAGAAAAAATGTGTTTTTTTAATGCGATAAGCTAAATTTTCCATGTAATTGTGGGCACTATATTTAATTTTATTTGAAGTGGAATTATATGTTTTATATAACTATATACAGTATAGTTATGAGCTTTCTGCCCGTAAGCCTGTAACAGTGGATCTCCACGGTTATAAATTTATCCACAGCGACAATGTACGACATATTCCCCTATTCTGCGATTAGTGTGCTAAACTGATAATCGCTATGCCTTACAGCCTTAGTATACGTAAAGTGATTATTTCAGGATTTTCCTGAATAACATTATAGGTAGATTTCGAAGTCGAAAAAAAAAATCCAGGCAAATGTTACCCAAGTTCAGATGGAGAAGCGGCTAACCGTTCACGCCGCGCCGGGAGATGCTGCCGCGCTACTACTCGCGCGGTCACGCCGTCGAAGAGGACACCGCGCCCGCCGGCGAGGCGGGCGAGGAGGTCGCCGCGCTCGCCGGTCATGCCGCACGGGAGGTCACTGGAGACCTTTTCCCTCGTCGGCGAGGCCGCGCACGGCGCCACCATACCCTAATCCGCTCGAGGAGGAGACATCCGAGGAGGATTAGGCTGTGGTCAACACGACAAAAGTCCAGTC
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| CDS seq | ATGTCATGGGTGAAGAGGACAGACTGCTGTAAATGGGAAGGCATCACCTGCAGCAGTGATGGCACAGTCACAGATGTCTTGCTGGCTGCTAAGGGCCTCCAAGGGCACATCTCGCCATTGCTCGGCAATCTTACTGGGCTGTTGCACCTCAACCTGTCTCACAACTTACTCAATGGCAACCTACCGATGGAATTGTTGTTCTCCAGAAGCATCATCGTCCTTGACGTTAGCTTCAACCGCCTAGATGGTTCTCTGCCAGAGTTGCAGTCCTCTAGTGGTGGTTTTCCTCTCCAGGTACTGAATATCTCAAGCAATTTATTTACAGGGCAGTTCTCATCCAAACTGTGGGAGGCGATGAAGAATATTGTTGCTCTTAATGCAAGCAACAACAGCTTTACAGGACAGATACCATCTTCTATCTGCATCAACTCCCCATCACTTGCTATCCTTGACCTTTCTTACAACCAATTCAGTGGCAGTATTCCTCCGGAGCTTGGAAATTGCTCCAAGCTGAGAGAGTTCAAGGCTGGCTACAACAATTTTAATGGAGCTCTCCCTGAAGAACTCTTCAGTGCTACCTCGTTGGAGCACTTGTCTCTTCCTAGCAATGATTTACAGGGAGTTCTTGATGGTTCTGACATATTAAAACTCGTCAAGCTGACTGTCCTTGATCTCGGATCGACTGGGCTCAGTGGGAACATCCCGGATTCTATTGGCCAACTAAGCACATTGGAGGAGCTCCGGCTGGACAACAACAACATGTCTGGTGAGCTGCCATCGGCCGTAGGTAACTGCACAAATCTGAGGTACCTCAGCCTCAGAAACAACAAATTTGTGGGAGATCTTAGCAAAGTCAATTTTACCCGGTTGAATTTGAGAATCGCAGATTTCTCAATTAATAACTTCACTGGTACAGTTCCAGAAAGCATATACTCATGCAGCAATCTAATTGCGTTGCGGCTGGCTTTCAACAAGTTTCATGGCCAGCTCTCACCAAGAATGGGCAATCTGAAGTCCATGTCCTTCTTTTCAATAGCCGATAACCATCTCACAAATATCACAAATGCACTTCAGATACTCAAGAGCTGCAAAAACCTTACCGCCGTTCTTATTGGAACCAACTTCAAGGGTGAAACCATATCAAAAAGTGAAACAATTGATGGTTTTGAGAATCTTCGGGTACTGACTATAGATTCCTGTGGATTGGTTGGACAAATTCCCACTTGGATATCAAAGCTCAAAAAACTGGAGGTGTTGGATTTATCAAACAATATGCTCTCTGGAAAAATACCATTTTGGATTAGTGATCTGCCTGTTCTTTTCTATTTAGATATAACAAACAACAGTCTTACAGGGGATATCCCAACTGCGTTGATGAACACGCCGATGCTACAATTAGGAAAGAATGCTGCCCAGTTGGACCCAAATTTCCTTGAATTGCCTGTTTATTGGACACGATCACGTCAATACCGCTTGCTCAACGCTTTTCCTAATGCGTTGAATCTAGGTAACAATGGTTTCACAGGAGTGATTCCCCCAGAGATTGGTCGGTTGAAAATGCTCGACGGCTTCAATATCAGCTTTAACAGGTTATCTGGAGAAATACCACAGCAGATATGCAATCTCACAAACCTGCAATTGCTAGATTTATCAAGCAATCAGCTCACAGGTGAACTACCGTCTGCACTGACTGATATGCACTTCCTTTCTAAATTCAATGTTTCTAACAATGAACTAGAAGGGCCAGTTCCAACTGGAGGACAGTTTGATACATTTCTTAATTCTAGCTATAGTGGGAATTCGAAGCTATGTGGTGCTGTACTCAGTAACCTTTGCAGTCCCACTACAAGAAAAGAAAACTTCACCTCACAGCGGCGCAACTTACGGTGTGCATTAGTCACTGGAATCACCTTGGGAGCACTCGTCGCTCTTGCTTTGCTTGCATGCTTCTTGATTGGGCGGTTGGTATATGATGATCACACCGAAAGCCTAACTCACCTTCAAATGCGGTACCGAAGATAG
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| Protein seq | MSWVKRTDCCKWEGITCSSDGTVTDVLLAAKGLQGHISPLLGNLTGLLHLNLSHNLLNGNLPMELLFSRSIIVLDVSFNRLDGSLPELQSSSGGFPLQVLNISSNLFTGQFSSKLWEAMKNIVALNASNNSFTGQIPSSICINSPSLAILDLSYNQFSGSIPPELGNCSKLREFKAGYNNFNGALPEELFSATSLEHLSLPSNDLQGVLDGSDILKLVKLTVLDLGSTGLSGNIPDSIGQLSTLEELRLDNNNMSGELPSAVGNCTNLRYLSLRNNKFVGDLSKVNFTRLNLRIADFSINNFTGTVPESIYSCSNLIALRLAFNKFHGQLSPRMGNLKSMSFFSIADNHLTNITNALQILKSCKNLTAVLIGTNFKGETISKSETIDGFENLRVLTIDSCGLVGQIPTWISKLKKLEVLDLSNNMLSGKIPFWISDLPVLFYLDITNNSLTGDIPTALMNTPMLQLGKNAAQLDPNFLELPVYWTRSRQYRLLNAFPNALNLGNNGFTGVIPPEIGRLKMLDGFNISFNRLSGEIPQQICNLTNLQLLDLSSNQLTGELPSALTDMHFLSKFNVSNNELEGPVPTGGQFDTFLNSSYSGNSKLCGAVLSNLCSPTTRKENFTSQRRNLRCALVTGITLGALVALALLACFLIGRLVYDDHTESLTHLQMRYRR |
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| Function | Tyrosine-sulfated glycopeptide receptor 1 [UniProtKB/Swiss-Prot:Q9C7S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g47760 | LOC_Os06g47760.1 | Chr06 | 28905577 | 28909089 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCATGGGTGAAGAGGACAGACTGCTGTAAATGGGAAGGCATCACCTGCAGCAGTGATGGCACAGTCACAGATGTCTTGCTGGCTGCTAAGGGCCTCCAAGGGCACATCTCGCCATTGCTCGGCAATCTTACTGGGCTGTTGCACCTCAACCTGTCTCACAACTTACTCAATGGCAACCTACCGATGGAATTGTTGTTCTCCAGAAGCATCATCGTCCTTGACGTTAGCTTCAACCGCCTAGATGGTTCTCTGCCAGAGTTGCAGTCCTCTAGTGGTGGTTTTCCTCTCCAGGTACTGAATATCTCAAGCAATTTATTTACAGGGCAGTTCTCATCCAAACTGTGGGAGGCGATGAAGAATATTGTTGCTCTTAATGCAAGCAACAACAGCTTTACAGGACAGATACCATCTTCTATCTGCATCAACTCCCCATCACTTGCTATCCTTGACCTTTCTTACAACCAATTCAGTGGCAGTATTCCTCCGGAGCTTGGAAATTGCTCCAAGCTGAGAGAGTTCAAGGCTGGCTACAACAATTTTAATGGAGCTCTCCCTGAAGAACTCTTCAGTGCTACCTCGTTGGAGCACTTGTCTCTTCCTAGCAATGATTTACAGGGAGTTCTTGATGGTTCTGACATATTAAAACTCGTCAAGCTGACTGTCCTTGATCTCGGATCGACTGGGCTCAGTGGGAACATCCCGGATTCTATTGGCCAACTAAGCACATTGGAGGAGCTCCGGCTGGACAACAACAACATGTCTGGTGAGCTGCCATCGGCCGTAGGTAACTGCACAAATCTGAGGTACCTCAGCCTCAGAAACAACAAATTTGTGGGAGATCTTAGCAAAGTCAATTTTACCCGGTTGAATTTGAGAATCGCAGATTTCTCAATTAATAACTTCACTGGTACAGTTCCAGAAAGCATATACTCATGCAGCAATCTAATTGCGTTGCGGCTGGCTTTCAACAAGTTTCATGGCCAGCTCTCACCAAGAATGGGCAATCTGAAGTCCATGTCCTTCTTTTCAATAGCCGATAACCATCTCACAAATATCACAAATGCACTTCAGATACTCAAGAGCTGCAAAAACCTTACCGCCGTTCTTATTGGAACCAACTTCAAGGGTGAAACCATATCAAAAAGTGAAACAATTGATGGTTTTGAGAATCTTCGGGTACTGACTATAGATTCCTGTGGATTGGTTGGACAAATTCCCACTTGGATATCAAAGCTCAAAAAACTGGAGGTGTTGGATTTATCAAACAATATGCTCTCTGGAAAAATACCATTTTGGATTAGTGATCTGCCTGTTCTTTTCTATTTAGATATAACAAACAACAGTCTTACAGGGGATATCCCAACTGCGTTGATGAACACGCCGATGCTACAATTAGGAAAGAATGCTGCCCAGTTGGACCCAAATTTCCTTGAATTGCCTGTTTATTGGACACGATCACGTCAATACCGCTTGCTCAACGCTTTTCCTAATGCGTTGAATCTAGGTAACAATGGTTTCACAGGAGTGATTCCCCCAGAGATTGGTCGGTTGAAAATGCTCGACGGCTTCAATATCAGCTTTAACAGGTTATCTGGAGAAATACCACAGCAGATATGCAATCTCACAAACCTGCAATTGCTAGATTTATCAAGCAATCAGCTCACAGGTGAACTACCGTCTGCACTGACTGATATGCACTTCCTTTCTAAATTCAATGTTTCTAACAATGAACTAGAAGGGCCAGTTCCAACTGGAGGACAGTTTGATACATTTCTTAATTCTAGCTATAGTGGGAATTCGAAGCTATGTGGTGCTGTACTCAGTAACCTTTGCAGTCCCACTACAAGAAAAGAAAACTTCACCTCACAGCGGCGCAACTTACGGTGTGCATTAGTCACTGGAATCACCTTGGGAGCACTCGTCGCTCTTGCTTTGCTTGCATGCTTCTTGATTGGGCGGTTGGTATATGATGATCACACCGAAAGCCTAACTCACCTTCAAATGCGGTACCGAAGATAG
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| Protein seq | MSWVKRTDCCKWEGITCSSDGTVTDVLLAAKGLQGHISPLLGNLTGLLHLNLSHNLLNGNLPMELLFSRSIIVLDVSFNRLDGSLPELQSSSGGFPLQVLNISSNLFTGQFSSKLWEAMKNIVALNASNNSFTGQIPSSICINSPSLAILDLSYNQFSGSIPPELGNCSKLREFKAGYNNFNGALPEELFSATSLEHLSLPSNDLQGVLDGSDILKLVKLTVLDLGSTGLSGNIPDSIGQLSTLEELRLDNNNMSGELPSAVGNCTNLRYLSLRNNKFVGDLSKVNFTRLNLRIADFSINNFTGTVPESIYSCSNLIALRLAFNKFHGQLSPRMGNLKSMSFFSIADNHLTNITNALQILKSCKNLTAVLIGTNFKGETISKSETIDGFENLRVLTIDSCGLVGQIPTWISKLKKLEVLDLSNNMLSGKIPFWISDLPVLFYLDITNNSLTGDIPTALMNTPMLQLGKNAAQLDPNFLELPVYWTRSRQYRLLNAFPNALNLGNNGFTGVIPPEIGRLKMLDGFNISFNRLSGEIPQQICNLTNLQLLDLSSNQLTGELPSALTDMHFLSKFNVSNNELEGPVPTGGQFDTFLNSSYSGNSKLCGAVLSNLCSPTTRKENFTSQRRNLRCALVTGITLGALVALALLACFLIGRLVYDDHTESLTHLQMRYRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.251476 | 0.116737 | 0.056122 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0691800 | SBH | 0.548103 | 0.454097 | 1.088344 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05970 | SBH | 0.582919 | 0.0 | 0.045232 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0691800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027290 | SBH | 0.066125 | 2.793295 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027120 | RBH | 0.022498 | 0.0 | 0.150163 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027280 | RBH | 0.138012 | 2.022668 | 0.224214 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026830 | RBH | 0.0 | 0.072810 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027330 | SBH | 0.000000 | 1.811720 | 1.149748 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0455100 | RBH | 1.7061275 | 1.9684575 | 0.5187905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026670 | SBH | 0.168016 | 0.799661 | 0.390164 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0437400 | RBH | 1.57325 | 1.149945 | 0.8571235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027230 | SBH | 0.019300 | 0.019467 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027300 | RBH | 0.066960 | 3.261031 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026830 | SBH | 3.411270 | 27.570658 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027520 | SBH | 0.105448 | 1.321196 | 0.075743 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027140 | RBH | 0.039438 | 0.485867 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027070 | RBH | 0.0 | 0.0 | 0.257429 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027130 | RBH | 0.0 | 0.000000 | 0.229312 |
