Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0004710 | OGI:02001240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3258005-3260148 | ||||||||
| Gene Symbol | LRK3, OsLRK3, OsPSKR7, PSKR7 | ||||||||||
| DNA seq | ctagccgagaaacctcgacaagcacaactgatctaacaacacccctactccaaagaaggcaccaaatgcaatcacaaagatgaccttgtaacctccttgtctgctggaaccttgaggtgcatctactaggactggatcatcacaatcttgatctagtatatggccgcatagcctcgggtttccatcgaagctggatcttgggaatgtatccaggtgtcctccagttggaacatgcccttgcaagtcattgttggagatgttgagttcagagaggaagttcaggttgttcaggtcagctggaattgtaccagtgagatggttgttggacaggtctagtatttctaggtttgtaagatcaaggattgtttctggaatctctccatgtaggttgttgtagcccagaatgagtgagagtagtgccttcaactgaccaatctctgttgggatcacacctgttaagttgttgttttccagaatcatcactgcagggaaatcactgacagtgaagtacttaggtgatggaccagtgtaaacaggcagctcaaagatctttatgtccaaatgagatgtaaccctttctgatcttagcattggcatctctgttaactctgctgggatttcacctgaaaggctgttgtttgataaatctagatagaatagggagtttaaggtgctgatccaaatcggtattgatccacttagatgattgttaaacaagtatagcatctccagattcttgagctttgatatccaaataggtatatttccaaacagtgggcagttttccatagcaagaaccttaagattctcaaaaccatcgattgttttgtcgtctgaaatttcctcatccctaaagttgcctccaataagcaaggtggtgagatctctagagctcttgaggatttgaagtgtatttgaaatatttgtaaaagagttttcagcaagtgataggtaggttagggacttgaggttgtggctattctgaatgagagctgaccatggaacttgttaaacgatagttgcaatgcattcaggttgctgcatgtgtagacactctctggaattgtgccagtgaagctgttacatgagacatgcaatgattttagactagacagtttggagaagttgaccttgccaagctctccactgaagttgttgctcccaagatttaatgctttgagattcgtgcagctgcctatagctggtgtcagctcccctgccatgctgttgtggttcaagtgaatctcctccaacctcttgagcctcccgatggaatcagggatgttgccactgaacatattgaatccaagatcaaggacaaccaaattcctgagcttgattatgcctgcaccatcaagaactccctgtaaaccattgttaggaaaagagaggtgctccagcgaggtcacattgaagagttcatcaggaagagttccactgagattgttgtgatcagcctttagcattcttaacgaagaacagttgccgatctccggtggcacattgccattgaaatggttgtaagagagatcgagcatggcaaaggaggacgatctgatgcagaagaaggttggcatcggcccagtgaaactgttgttgctggcgttgagcacaaccagattctccatcttctcccatgagctggacagaaaccgtcctgaaaacgagttgctggagacgttgatcacctgaatgcggcgaccggaagctgccgaagacgacgacgccggcgaatcttgcaggtccccatagaggaggttgaagctgatgtcaaggatgacgatgctgtctgacgacattatttctgcaggtaatccaccggacagtgagttgtgcgacaggttcagacgctgcaagcctggtagcctgccaagagcaggtgatatgctgccttcgagtttcttggaggccagcaagatgtctgtgattgtgacggccttgctggccgtgctgctgctgcaggtgacgccttcccatgagcagcagtctgtgccgtgcctccacgatgcggcaaggccgccatggccatcttgcgagagcccagccaagaactggaggagacagtttctctcatggtccgtgcagcagctgattgaagatgcagagaacaggatcagcacaagaacgaggcagagagtaggcat
More
|
||||||||||
| CDS seq | atgcctactctctgcctcgttcttgtgctgatcctgttctctgcatcttcaatcagctgctgcacggaccatgagagaaactgtctcctccagttcttggctgggctctcgcaagatggccatggcggccttgccgcatcgtggaggcacggcacagactgctgctcatgggaaggcgtcacctgcagcagcagcacggccagcaaggccgtcacaatcacagacatcttgctggcctccaagaaactcgaaggcagcatatcacctgctcttggcaggctaccaggcttgcagcgtctgaacctgtcgcacaactcactgtccggtggattacctgcagaaataatgtcgtcagacagcatcgtcatccttgacatcagcttcaacctcctctatggggacctgcaagattcgccggcgtcgtcgtcttcggcagcttccggtcgccgcattcaggtgatcaacgtctccagcaactcgttttcaggacggtttctgtccagctcatgggagaagatggagaatctggttgtgctcaacgccagcaacaacagtttcactgggccgatgccaaccttcttctgcatcagatcgtcctcctttgccatgctcgatctctcttacaaccatttcaatggcaatgtgccaccggagatcggcaactgttcttcgttaagaatgctaaaggctgatcacaacaatctcagtggaactcttcctgatgaactcttcaatgtgacctcgctggagcacctctcttttcctaacaatggtttacagggagttcttgatggtgcaggcataatcaagctcaggaatttggttgtccttgatcttggattcaatatgttcagtggcaacatccctgattccatcgggaggctcaagaggttggaggagattcacttgaaccacaacagcatggcaggggagctgacaccagctataggcagctgcacgaatctcaaagcattaaatcttgggagcaacaacttcagtggagagcttggcaaggtcaacttctccaaactgtctagtctaaaatcattgcatgtctcatgtaacagcttcactggcacaattccagagagtgtctacacatgcagcaacctgaatgcattgcaactatcgtttaacaagttccatgctctcattcagaatagccacaacctcaagtccctaacctacctatcacttgctgaaaactcttttacaaatatttcaaatacacttcaaatcctcaagagctctagagatctcaccaccttgcttattggaggcaactttagggatgaggaaatttcagacgacaaaacaatcgatggttttgagaatcttaaggttcttgctatggaaaactgcccactgtttggaaatatacctatttggatatcaaagctcaagaatctggagatgctatacttgtttaacaatcatctaagtggatcaataccgatttggatcagcaccttaaactccctattctatctagatttatcaaacaacagcctttcaggtgaaatcccagcagagttaacagagatgccaatgctaagatcagaaagggttacatctcatttggacataaagatctttgagctgcctgtttacactggtccatcacctaagtacttcactgtcagtgatttccctgcagtgatgattctggaaaacaacaacttaacaggtgtgatcccaacagagattggtcagttgaaggcactactctcactcattctgggctacaacaacctacatggagagattccagaaacaatccttgatcttacaaacctagaaatactagacctgtccaacaaccatctcactggtacaattccagctgacctgaacaacctgaacttcctctctgaactcaacatctccaacaatgacttgcaagggcatgttccaactggaggacacctggatacattcccaagatccagcttcgatggaaacccgaggctatgcggccatatactagatcaagattgtgatgatccagtcctagtagatgcacctcaaggttccagcagacaaggaggttacaaggtcatctttgtgattgcatttggtgccttctttggagtaggggtgttgttagatcagttgtgcttgtcgaggtttctcggctag
More
|
||||||||||
| Protein seq | MPTLCLVLVLILFSASSISCCTDHERNCLLQFLAGLSQDGHGGLAASWRHGTDCCSWEGVTCSSSTASKAVTITDILLASKKLEGSISPALGRLPGLQRLNLSHNSLSGGLPAEIMSSDSIVILDISFNLLYGDLQDSPASSSSAASGRRIQVINVSSNSFSGRFLSSSWEKMENLVVLNASNNSFTGPMPTFFCIRSSSFAMLDLSYNHFNGNVPPEIGNCSSLRMLKADHNNLSGTLPDELFNVTSLEHLSFPNNGLQGVLDGAGIIKLRNLVVLDLGFNMFSGNIPDSIGRLKRLEEIHLNHNSMAGELTPAIGSCTNLKALNLGSNNFSGELGKVNFSKLSSLKSLHVSCNSFTGTIPESVYTCSNLNALQLSFNKFHALIQNSHNLKSLTYLSLAENSFTNISNTLQILKSSRDLTTLLIGGNFRDEEISDDKTIDGFENLKVLAMENCPLFGNIPIWISKLKNLEMLYLFNNHLSGSIPIWISTLNSLFYLDLSNNSLSGEIPAELTEMPMLRSERVTSHLDIKIFELPVYTGPSPKYFTVSDFPAVMILENNNLTGVIPTEIGQLKALLSLILGYNNLHGEIPETILDLTNLEILDLSNNHLTGTIPADLNNLNFLSELNISNNDLQGHVPTGGHLDTFPRSSFDGNPRLCGHILDQDCDDPVLVDAPQGSSRQGGYKVIFVIAFGAFFGVGVLLDQLCLSRFLG |
||||||||||
| Function | Tyrosine-sulfated glycopeptide receptor 1 [UniProtKB/Swiss-Prot:Q9C7S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0004710 | OsLima_02g0004710.01 | Chr02 | 3258005 | 3260148 | - | NAM | ||
| CDS seq | atgcctactctctgcctcgttcttgtgctgatcctgttctctgcatcttcaatcagctgctgcacggaccatgagagaaactgtctcctccagttcttggctgggctctcgcaagatggccatggcggccttgccgcatcgtggaggcacggcacagactgctgctcatgggaaggcgtcacctgcagcagcagcacggccagcaaggccgtcacaatcacagacatcttgctggcctccaagaaactcgaaggcagcatatcacctgctcttggcaggctaccaggcttgcagcgtctgaacctgtcgcacaactcactgtccggtggattacctgcagaaataatgtcgtcagacagcatcgtcatccttgacatcagcttcaacctcctctatggggacctgcaagattcgccggcgtcgtcgtcttcggcagcttccggtcgccgcattcaggtgatcaacgtctccagcaactcgttttcaggacggtttctgtccagctcatgggagaagatggagaatctggttgtgctcaacgccagcaacaacagtttcactgggccgatgccaaccttcttctgcatcagatcgtcctcctttgccatgctcgatctctcttacaaccatttcaatggcaatgtgccaccggagatcggcaactgttcttcgttaagaatgctaaaggctgatcacaacaatctcagtggaactcttcctgatgaactcttcaatgtgacctcgctggagcacctctcttttcctaacaatggtttacagggagttcttgatggtgcaggcataatcaagctcaggaatttggttgtccttgatcttggattcaatatgttcagtggcaacatccctgattccatcgggaggctcaagaggttggaggagattcacttgaaccacaacagcatggcaggggagctgacaccagctataggcagctgcacgaatctcaaagcattaaatcttgggagcaacaacttcagtggagagcttggcaaggtcaacttctccaaactgtctagtctaaaatcattgcatgtctcatgtaacagcttcactggcacaattccagagagtgtctacacatgcagcaacctgaatgcattgcaactatcgtttaacaagttccatgctctcattcagaatagccacaacctcaagtccctaacctacctatcacttgctgaaaactcttttacaaatatttcaaatacacttcaaatcctcaagagctctagagatctcaccaccttgcttattggaggcaactttagggatgaggaaatttcagacgacaaaacaatcgatggttttgagaatcttaaggttcttgctatggaaaactgcccactgtttggaaatatacctatttggatatcaaagctcaagaatctggagatgctatacttgtttaacaatcatctaagtggatcaataccgatttggatcagcaccttaaactccctattctatctagatttatcaaacaacagcctttcaggtgaaatcccagcagagttaacagagatgccaatgctaagatcagaaagggttacatctcatttggacataaagatctttgagctgcctgtttacactggtccatcacctaagtacttcactgtcagtgatttccctgcagtgatgattctggaaaacaacaacttaacaggtgtgatcccaacagagattggtcagttgaaggcactactctcactcattctgggctacaacaacctacatggagagattccagaaacaatccttgatcttacaaacctagaaatactagacctgtccaacaaccatctcactggtacaattccagctgacctgaacaacctgaacttcctctctgaactcaacatctccaacaatgacttgcaagggcatgttccaactggaggacacctggatacattcccaagatccagcttcgatggaaacccgaggctatgcggccatatactagatcaagattgtgatgatccagtcctagtagatgcacctcaaggttccagcagacaaggaggttacaaggtcatctttgtgattgcatttggtgccttctttggagtaggggtgttgttagatcagttgtgcttgtcgaggtttctcggctag
More
|
|||||||
| Protein seq | MPTLCLVLVLILFSASSISCCTDHERNCLLQFLAGLSQDGHGGLAASWRHGTDCCSWEGVTCSSSTASKAVTITDILLASKKLEGSISPALGRLPGLQRLNLSHNSLSGGLPAEIMSSDSIVILDISFNLLYGDLQDSPASSSSAASGRRIQVINVSSNSFSGRFLSSSWEKMENLVVLNASNNSFTGPMPTFFCIRSSSFAMLDLSYNHFNGNVPPEIGNCSSLRMLKADHNNLSGTLPDELFNVTSLEHLSFPNNGLQGVLDGAGIIKLRNLVVLDLGFNMFSGNIPDSIGRLKRLEEIHLNHNSMAGELTPAIGSCTNLKALNLGSNNFSGELGKVNFSKLSSLKSLHVSCNSFTGTIPESVYTCSNLNALQLSFNKFHALIQNSHNLKSLTYLSLAENSFTNISNTLQILKSSRDLTTLLIGGNFRDEEISDDKTIDGFENLKVLAMENCPLFGNIPIWISKLKNLEMLYLFNNHLSGSIPIWISTLNSLFYLDLSNNSLSGEIPAELTEMPMLRSERVTSHLDIKIFELPVYTGPSPKYFTVSDFPAVMILENNNLTGVIPTEIGQLKALLSLILGYNNLHGEIPETILDLTNLEILDLSNNHLTGTIPADLNNLNFLSELNISNNDLQGHVPTGGHLDTFPRSSFDGNPRLCGHILDQDCDDPVLVDAPQGSSRQGGYKVIFVIAFGAFFGVGVLLDQLCLSRFLG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0156600 | SBH | 1.764994 | 0.846738 | 1.808238 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06260 | SBH | 0.071702 | 0.293505 | 0.007535 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0156600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004310 | RBH | 0.053326 | 2.659473 | 0.663938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004260 | SBH | 0.069201 | 0.845967 | 0.776244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004170 | SBH | 0.137843 | 1.557139 | 0.736899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004250 | SBH | 0.061636 | 0.022630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004110 | SBH | 2.410689 | 8.209851 | 3.171613 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0052600 | RBH | 0.2532285 | 0 | 0.0206475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0054800 | SBH | 0.5707365 | 1.043263 | 0.1931665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004180 | SBH | 0.043297 | 0.057747 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004210 | RBH | 0.000000 | 0.847441 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004060 | SBH | 0.292437 | 2.052631 | 0.572981 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004010 | SBH | 0.630622 | 3.130005 | 0.941510 |
