Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0004390 | OGI:02001240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:3168395-3170527 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagttcaaccgaaaatatctggatagaactatctgatcatatagcactcctactccaaagaatacacaaaaagcaatcacaaagatgaccttgttgatgtactcttttgttgagtttggggaagacaaatctacttctgctacattgcaacggtgcaaaagtatcgggctgcatagctctgggtttccagcaaaactagaacttggaaatgtgctgaactggcctccaaTtggtacagacccttttagatcattgtgggaaacattaaattcggaaaggaagtgaaggttcaccagtgctggagggattgcacctgtcagatggttgtatgacaggtctagaaccatcagattcttgaggttgctgatcgattgtgggatctccctgtttaggttgttgaagctcaagttgagtgaaacgagtgctttcaactcaccaatctccatcgggatcgcaccagtgaatttgttattacctagattcaacattttagggaaagcagtaactgtacggtactgaaaacacagacatgcgcctgcatacactggaaacggaaaggctcttgggtctgagttatctgcaatcttatctgattttagcattggtatatccattagtgcttgtggtatttctcctgaaaggctattattggatatgtctacatacttaaggaagtttaggctattgatccaggttggtataggtccactgagttgattgttggataaatctaaaactgccaaatttccgagctttgtgagccaactaggtatttttccagtcaatgcacaatcatgtatgctaataccaaaaatattctcgaaaccatcaattgtttcatcctgtggcatagcttcgtgcataaagtttCccccaattaacaagacattgaggttccttaagctcttgagtatgtgaagagtaTttttgatatttgtaaaaTtgttgtaggaaagagataagaaggtgatagaattcagattccgtatgttatttgtcaactggccgtgaagcctattggaagatagccgcaaccaagtcaaattactacatgagtatatgctttctggaattgtgccggtgaagttattcgagccaaaatctaatgttttcagattgggtagattggagtagttaaccttggcaagctcacccgtcaacttgtttctcctgaggttgatggttactagatttgtgcaatctcccaatgatgatggcagctctccagataagttgttgctgcAaatgtgaagctcctctagtcttttcaactggcctatagaaTttgggatcttgccactgaatctattccatccaagatcaacaaaaacaagattgatgagctttacgatgagagcatcatcaattgttccttgcaacccattgttagcgaaagagaggtactccaatgatgtggcattgaagagatcacctgggagaggccctctgatgttgttggcattagccttgagaagtctaagggcagaacatttacctattccaGgggggatgttgccactgaactggttgtacccaagatcaagaacagcaaaagatggcgaattgctgcagaaggaggtaggtatgtgcccggtaaaactgttgttgctcgcgttgattgcgaccaggttcctcattttctcccatgtgatggatggaaattctcctgtaaaccggttgcttgagatattcagtacctgcagtggccggtcagatactgatgaattcaactcttgcaggtcccccttgaggcgattgaagctgacatcaaggacgacgatgctgccagaagacatcagctctgctggaaggCcaccagatagggagttgtacgacaggttgaggcgcgacaagctggtgagctctcccagcgacggtgcgaTttgcccttcaaggcctttagaggtgagacgaatctcaatgacagccccatcttcattgcaggtgatgccctcccacacacagcagttcgtgccattctgccatgacatggagatgccaccgtcttgcgacagctcagcaaggaaccggaggagagaactcttctcctgctcgacgcaagccatggcggaggtggccacgatgagaagcagcagcagtaatgcagcagtagcgaggccagagtacggcat
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| CDS seq | atgccgtactctggcctcgctactgctgcattactgctgctgcttctcatcgtggccacctccgccatggcttgcgtcgagcaggagaagagttctctcctccggttccttgctgagctgtcgcaagacggtggcatctccatgtcatggcagaatggcacgaactgctgtgtgtgggagggcatcacctgcaatgaagatggggctgtcattgagattcgtctcacctctaaaggccttgaagggcaaAtcgcaccgtcgctgggagagctcaccagcttgtcgcgcctcaacctgtcgtacaactccctatctggtgGccttccagcagagctgatgtcttctggcagcatcgtcgtccttgatgtcagcttcaatcgcctcaagggggacctgcaagagttgaattcatcagtatctgaccggccactgcaggtactgaatatctcaagcaaccggtttacaggagaatttccatccatcacatgggagaaaatgaggaacctggtcgcaatcaacgcgagcaacaacagttttaccgggcacatacctacctccttctgcagcaattcgccatcttttgctgttcttgatcttgggtacaaccagttcagtggcaacatcccccCtggaataggtaaatgttctgcccttagacttctcaaggctaatgccaacaacatcagagggcctctcccaggtgatctcttcaatgccacatcattggagtacctctctttcgctaacaatgggttgcaaggaacaattgatgatgctctcatcgtaaagctcatcaatcttgtttttgttgatcttggatggaatagattcagtggcaagatcccaaAttctataggccagttgaaaagactagaggagcttcacattTgcagcaacaacttatctggagagctgccatcatcattgggagattgcacaaatctagtaaccatcaacctcaggagaaacaagttgacgggtgagcttgccaaggttaactactccaatctacccaatctgaaaacattagattttggctcgaataacttcaccggcacaattccagaaagcatatactcatgtagtaatttgacttggttgcggctatcttccaataggcttcacggccagttgacaaataacatacggaatctgaattctatcaccttcttatctctttcctacaacaAttttacaaatatcaaaaAtactcttcacatactcaagagcttaaggaacctcaatgtcttgttaattggggGaaactttatgcacgaagctatgccacaggatgaaacaattgatggtttcgagaatatttttggtattagcatacatgattgtgcattgactggaaaaatacctagttggctcacaaagctcggaaatttggcagttttagatttatccaacaatcaactcagtggacctataccaacctggatcaatagcctaaacttccttaagtatgtagacatatccaataatagcctttcaggagaaataccacaagcactaatggatataccaatgctaaaatcagataagattgcagataactcagacccaagagcctttccgtttccagtgtatgcaggcgcatgtctgtgttttcagtaccgtacagttactgctttccctaaaatgttgaatctaggtaataacaaattcactggtgcgatcccgatggagattggtgagttgaaagcactcgtttcactcaacttgagcttcaacaacctaaacagggagatcccacaatcgatcagcaacctcaagaatctgatggttctagacctgtcatacaaccatctgacaggtgcaatccctccagcactggtgaaccttcacttcctttccgaatttaatgtttcccacaatgatctaaaagggtctgtaccaAttggaggccagttcagcacatttccaagttctagttttgctggaaacccagagctatgcagcccgatacttttgcaccgttgcaatgtagcagaagtagatttgtcttccccaaactcaacaaaagagtacatcaacaaggtcatctttgtgattgctttttgtgtattctttggagtaggagtgctatatgatcagatagttctatccagatattttcggttgaactga
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| Protein seq | MPYSGLATAALLLLLLIVATSAMACVEQEKSSLLRFLAELSQDGGISMSWQNGTNCCVWEGITCNEDGAVIEIRLTSKGLEGQIAPSLGELTSLSRLNLSYNSLSGGLPAELMSSGSIVVLDVSFNRLKGDLQELNSSVSDRPLQVLNISSNRFTGEFPSITWEKMRNLVAINASNNSFTGHIPTSFCSNSPSFAVLDLGYNQFSGNIPPGIGKCSALRLLKANANNIRGPLPGDLFNATSLEYLSFANNGLQGTIDDALIVKLINLVFVDLGWNRFSGKIPNSIGQLKRLEELHICSNNLSGELPSSLGDCTNLVTINLRRNKLTGELAKVNYSNLPNLKTLDFGSNNFTGTIPESIYSCSNLTWLRLSSNRLHGQLTNNIRNLNSITFLSLSYNNFTNIKNTLHILKSLRNLNVLLIGGNFMHEAMPQDETIDGFENIFGISIHDCALTGKIPSWLTKLGNLAVLDLSNNQLSGPIPTWINSLNFLKYVDISNNSLSGEIPQALMDIPMLKSDKIADNSDPRAFPFPVYAGACLCFQYRTVTAFPKMLNLGNNKFTGAIPMEIGELKALVSLNLSFNNLNREIPQSISNLKNLMVLDLSYNHLTGAIPPALVNLHFLSEFNVSHNDLKGSVPIGGQFSTFPSSSFAGNPELCSPILLHRCNVAEVDLSSPNSTKEYINKVIFVIAFCVFFGVGVLYDQIVLSRYFRLN |
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| Function | Receptor-like protein 3 [UniProtKB/Swiss-Prot:Q9SHI4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0004390 | OsLiXu_02g0004390.01 | Chr02 | 3168395 | 3170527 | - | NAM | ||
| CDS seq | atgccgtactctggcctcgctactgctgcattactgctgctgcttctcatcgtggccacctccgccatggcttgcgtcgagcaggagaagagttctctcctccggttccttgctgagctgtcgcaagacggtggcatctccatgtcatggcagaatggcacgaactgctgtgtgtgggagggcatcacctgcaatgaagatggggctgtcattgagattcgtctcacctctaaaggccttgaagggcaaAtcgcaccgtcgctgggagagctcaccagcttgtcgcgcctcaacctgtcgtacaactccctatctggtgGccttccagcagagctgatgtcttctggcagcatcgtcgtccttgatgtcagcttcaatcgcctcaagggggacctgcaagagttgaattcatcagtatctgaccggccactgcaggtactgaatatctcaagcaaccggtttacaggagaatttccatccatcacatgggagaaaatgaggaacctggtcgcaatcaacgcgagcaacaacagttttaccgggcacatacctacctccttctgcagcaattcgccatcttttgctgttcttgatcttgggtacaaccagttcagtggcaacatcccccCtggaataggtaaatgttctgcccttagacttctcaaggctaatgccaacaacatcagagggcctctcccaggtgatctcttcaatgccacatcattggagtacctctctttcgctaacaatgggttgcaaggaacaattgatgatgctctcatcgtaaagctcatcaatcttgtttttgttgatcttggatggaatagattcagtggcaagatcccaaAttctataggccagttgaaaagactagaggagcttcacattTgcagcaacaacttatctggagagctgccatcatcattgggagattgcacaaatctagtaaccatcaacctcaggagaaacaagttgacgggtgagcttgccaaggttaactactccaatctacccaatctgaaaacattagattttggctcgaataacttcaccggcacaattccagaaagcatatactcatgtagtaatttgacttggttgcggctatcttccaataggcttcacggccagttgacaaataacatacggaatctgaattctatcaccttcttatctctttcctacaacaAttttacaaatatcaaaaAtactcttcacatactcaagagcttaaggaacctcaatgtcttgttaattggggGaaactttatgcacgaagctatgccacaggatgaaacaattgatggtttcgagaatatttttggtattagcatacatgattgtgcattgactggaaaaatacctagttggctcacaaagctcggaaatttggcagttttagatttatccaacaatcaactcagtggacctataccaacctggatcaatagcctaaacttccttaagtatgtagacatatccaataatagcctttcaggagaaataccacaagcactaatggatataccaatgctaaaatcagataagattgcagataactcagacccaagagcctttccgtttccagtgtatgcaggcgcatgtctgtgttttcagtaccgtacagttactgctttccctaaaatgttgaatctaggtaataacaaattcactggtgcgatcccgatggagattggtgagttgaaagcactcgtttcactcaacttgagcttcaacaacctaaacagggagatcccacaatcgatcagcaacctcaagaatctgatggttctagacctgtcatacaaccatctgacaggtgcaatccctccagcactggtgaaccttcacttcctttccgaatttaatgtttcccacaatgatctaaaagggtctgtaccaAttggaggccagttcagcacatttccaagttctagttttgctggaaacccagagctatgcagcccgatacttttgcaccgttgcaatgtagcagaagtagatttgtcttccccaaactcaacaaaagagtacatcaacaaggtcatctttgtgattgctttttgtgtattctttggagtaggagtgctatatgatcagatagttctatccagatattttcggttgaactga
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| Protein seq | MPYSGLATAALLLLLLIVATSAMACVEQEKSSLLRFLAELSQDGGISMSWQNGTNCCVWEGITCNEDGAVIEIRLTSKGLEGQIAPSLGELTSLSRLNLSYNSLSGGLPAELMSSGSIVVLDVSFNRLKGDLQELNSSVSDRPLQVLNISSNRFTGEFPSITWEKMRNLVAINASNNSFTGHIPTSFCSNSPSFAVLDLGYNQFSGNIPPGIGKCSALRLLKANANNIRGPLPGDLFNATSLEYLSFANNGLQGTIDDALIVKLINLVFVDLGWNRFSGKIPNSIGQLKRLEELHICSNNLSGELPSSLGDCTNLVTINLRRNKLTGELAKVNYSNLPNLKTLDFGSNNFTGTIPESIYSCSNLTWLRLSSNRLHGQLTNNIRNLNSITFLSLSYNNFTNIKNTLHILKSLRNLNVLLIGGNFMHEAMPQDETIDGFENIFGISIHDCALTGKIPSWLTKLGNLAVLDLSNNQLSGPIPTWINSLNFLKYVDISNNSLSGEIPQALMDIPMLKSDKIADNSDPRAFPFPVYAGACLCFQYRTVTAFPKMLNLGNNKFTGAIPMEIGELKALVSLNLSFNNLNREIPQSISNLKNLMVLDLSYNHLTGAIPPALVNLHFLSEFNVSHNDLKGSVPIGGQFSTFPSSSFAGNPELCSPILLHRCNVAEVDLSSPNSTKEYINKVIFVIAFCVFFGVGVLYDQIVLSRYFRLN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0155900 | RBH | 1.346298 | 0.557559 | 0.263913 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06180 | SBH | 0.178056 | 0.515403 | 0.284927 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0155900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004310 | RBH | 0.053326 | 2.659473 | 0.663938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004470 | RBH | 0.0 | 1.147084 | 0.356581 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004170 | SBH | 0.137843 | 1.557139 | 0.736899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004250 | RBH | 0.061636 | 0.022630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004280 | SBH | 1.714308 | 1.291915 | 1.010436 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0052000 | SBH | 0.457674 | 0.8270825 | 1.2673805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0053900 | SBH | 1.113259 | 1.3618645 | 4.3326725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004660 | RBH | 0.181147 | 0.046326 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004160 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004440 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0007670 | RBH | 0.274163 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004260 | SBH | 0.050727 | 0.312735 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004260 | RBH | 0.044501 | 0.568282 | 0.545400 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004260 | SBH | 0.000000 | 0.353235 | 0.384476 |
