Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0155900 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:3065811-3072625 | ||||||||
| Gene Symbol | LRK5, OsLRK5, OsPSKR5, PSKR5, - | ||||||||||
| DNA seq | TTAACCGAAAATATCTAGATACAACTATCTGATCATATAGCACTCCAATTCCAAAGAATACACAAAAAGCAATCACAGGGATGACCTTGTTGATGTAATCTTTTTTTGAGCTTGGGGGAGACAAATCTGCTTCTGCTACATTGCAACGGTGCAAAAGCATCGGGCTGCATAGCTCTGGGTTTCCAGCAAAACTAGAACTTGGAAATGTGCTGAACTGGCCTCCAATTGGTACAGACCCTTTTAGATCATTGTAGGAAACATTGAATTCAGAAAGGAAGTGAAGGTTCACCAGTGCTGGAGGGATTGCACCTGTCAGATGGTTGTATGACAGGTCTAGAACCATCAGATTCTTGAGGTTGCTGATCGATTGTGGGATCTCCCTGTTTAGGTTGTTGAAGCTCAAGTCGAGTGAAACGAGTGCTTTCAACTCACCAATCTCCATCGGGATCACACCAGTGAATTTGTTATTACCTAGATTCAACATTTTAGGGAAAGCAGTAACTATACGGTACTGAAAACACAGACATGCGCCTGCATACACTGGAAACGGAAAGGCTCTTGGGTCTGAGTGTAGAAGGAGATTTGGATCAACCGTAACTTTCATTGATCAATGGAGCTTATATTTATACATGTACAACAAGGCTTGGGAGTTGCCTGGGCCTAACTAATCCCCTGATCTAAGGGACGTGCAGCGGTGCGAGCGGAGCGAGGAGCGCGGCGTCGTGCGCGGGGTGCGCGTCGTGCGCGTGGAGCGCGCCTCGAGAGTCTGACGAAGCCGTTCGCCAACACCCCCCCGCAGTCGCAGCCGTCGTATCACCGACGCAGAGACTGGCTCGGAACTCGTTGAACATGCTTGAAGGAAGCCCTTTTGTGAACACATCCGCGAACTGATGGGCACTCGGTATCGGTAGGACGCGGAGTTCACCGAGCGCGACCTTCTCCCTGACGAAGTGGATGTCGAGCTCGATGTGTTTGGTCCGCTTGTGGTGCACCGGATTCTTGGACATGTAGACGCTGGAGATGTTGTCACAGTAAGCGATCGTCGCCTGTGGAACGCGGCAGTGGAGTTCACCGAGCAGCTGGCGCAACCAAGTGCACTCCGCCACCGCGTTCGCCACACCTCTGTACTCGGCTTCCGCACTTGACCTCGAGACGGTCGTCTGCCGCTTGGACGACCAGGAGATGAGGGAGTCGCCGAGGAAGATGCAAAAGCCGGACGTGGAACGCCGGGTGTCGGGGCAGCCGGCCCAATCTGCGTCGCTGAAGGCGGTGAGCGTCGGCGACGTCGAGGCGCGAAGGTGTAAGCCAAACGCGGCCGTTCCCTTGATGTAGCGCAGGATCCGCTTCAGCAGGGTGACGTGAGCTTCGCGCGGAGCATGCATGTGCAAGCACACCTGCTGGACGGCGTAGGCGATGTCGGGCCGCGTCAAGGTCAGGTACTGGAGAGCGCCGGCAATGCTGCGGTACCAGGAGGAGTCCTGGAAGAGAGGCCCCTCGTCGCTTGACAGCTTGGGTTTAGCGTCCGCCGGAGTGTCCACGGCCTTGCAGTTCGCCATGCCTGCACGTTCGAGGACATCGGTGGCGTACTTGGACTGGCTGAGGACGAACCCGTCGGCAGTGCGCTGAACTTCGATGCCGAGGAAGTACTTCAGGGGCCCCATGTCCTTGACCTTGAACTCCGCTTGAAGGCGATCGATGATGCGCTGCAGCAAGCTCGACGAGGACGCGGAGAGGATCATGTCGTCGACGTAGAGGAGGAGGTAGGCCGTGTCGGAGCCACGGCGCAGCACGAACAGGGAGGGGTCGGCGCGGGACTGGACGAAGCCGAGGCTGGTTGCATGATCGGCGAAGCGCTTGAACCAAGCGCGCGGGGCTTGACGAAGACCGTACAGCGAACGGGAGAGGAGGCACACGTCCGCCGGGCGAGCAGCATCCTCAAAGCCTGTGGGCTGCTGGCACAGGACACGTTCCTGAAGATGGCCGTGCAGGAACGCGTTTGAAACGTCCAGTTGATGCGCCGGCCATTGCTTGGAGGAAATCAGCGTCAGCACGGTGCGAATGGTCGCTGGTTTGACGACGGGCGAGAATGTCTCGCCAAAGTCGACGCCCGGGCGCTGGTTAAACCCGCGAACCACCCAACGTGCCTTGTACTTGTCGAGTGAGCCGTCAGCATGAAGCTTGGTCTTGAAGACCCACTTGCCGGTGATGATCCGAGCACCGGGAGGCCGGGGAACCAGAGTCCACGTCCTGTTCGCGAGCAGGGCGTCGAACTCAGCCTGCATCGCCGCGCGCCAGTTGGGATCCCGGAGCGCCGCGCGAACAGACGAAGGTGTCGGCGACAGGGTCGACGTGGCAGTCATGGCGTACCGCGGGTTGGGTTTGCTGATCCCAGCCCGCGCACGCGTCGTCATGGCGTGTCGAGGTGGAGAGGCGGACGCTGGCGACGACGTCTCGGGTGATGGAGGCGGCGCGACGTCGTGGGCCGGAGCAGCACTGCTGGGCGTGGACGACGCGGGCGACGGAGGCGATGCGGCGTCGTGAGCTGGGGCGGTGCCGACAGGTGTGACGACGTGCTGTGCTGGAGCAGGCAGCAGCACAATAGTGTCATCGCCGTGGTCCGGTGGCGGAGGAGCTGACGGGCGAGGCGATGGCACGTCGCGGAAGGGGAACACGTCCTCGACGAACGTGACGTGGCGCGACGTGAACACCCGGCGGGAGACCATGTCGTAGCAGCGATAGCCACGATGGTCAGCCGGGTAGCCGATGAAGACGCACGCCAGGGATCGCGGGCTGAGCTTGTGCGGCGCTGTCGCGATGGTGTTGGGGTAGCAGAGGCAGCCGAACACGCGAAGATGATCGTACGTCGGGGGAGCGCCGAGCAGCAGCTGGTACGGCGTGAGGGAGCCCGTGGCGCGGCATGGCCGTCGGTTGATCAGATGCGTCGCCGTCTGCAAGGCTTCAGCCCAAAAAGACAAAGGAGCAGCGCTGTGAACAAGCATTGTGCGCACGCAGTCATTGATCGTCCGGAGGATACGTTCCGCCTTGCCATTCTGTTGAGAGGAATAGGGGCAGGAGAGGCGAAGAACAGCTCCGTGGAGAGACAGGAGTGAGCGAAGTGCATAAGAATCGTATTCCTTGCCATTGTCAGTTTGCAGAGCTAAAACGGGGAGCCCGAACTGTGTGTGTGCATAAGCAAAGAAGGAACGAACAGTATGAAACACCTCAGATTTATTGCGAACAGGAAAGGTCCAAATATAGTGTGTAAAATCATCAAGAAATACCACATAATACTTGTAACCGGAATTGCTATAAATGGGAGAGGTCCAAACATCTGTATGCACTAACTGAAAGGGAAATAGAGTCTGACTAGATGAAGAGTGGAAAGGAAGCCGCACATTCTTGCCTACATGACAAGCAGAACAGTGATGGGGGGCTGATTTATTACATTGGAAATCAAAGGAACCAAGAACCTTGGACAGGGAAGCAGAGCCAGGGTGCCCGAGCCGCAGATGCCAATGCTCCACCGACGGCGAGGAAGTCGCAGAGAGGGCGTGTGGCGATGGCAGACGCAGGGGGTACAGGTCACCCGGGCTGTCACAGCGGAGCTTCACCACCTGAGTTTGAAGATCCTTGATGGAGAAACCAGTTGGATCAAATTCAATGGAGACATTATTATCACGAGTTAGCTTTTTCACAGAGATCAAATTCTTAATCAAGGGAGGAGAAACAAGCACGTTATGAAGGTGTAGATCAGTGGAGGATGTGGGAATGTGGGTGGAAGCTGTATGCGTGACAGGCAGCTTGGCACCATTGCCGACAGTGATACAAGAGGAGAAAGGAAGAGGACGGGGATGAGCAAGAATACCAGGGGTGGAGGACATATGTGCTGACGCACCGGTGTCGAGGAACCAATCCGCAGCGCTCGGAGGAGTGGTGGTGGCGACGCCGGCGGACTGCAAGGCGCTGTAGAGCGCACTGTTGTCCCAGGCGCCGGTGGATTGAACTCCTGGAGATGCCGGAGGAAGAGCCGGAAGCAGGTGCTGCGCGGTCATGGCCTGTTGGGCCTGGAACGGCGGGCGAGGGCCCAACACACCCGCGCCGGGAGCCCGGAACGGGAAAGGCCAGGCCTGGACAAAGCCTGTCCAGGGGTTGTAGCCCCAAGGCGCAGGAGGGCGAGGCTGGCCGTCGTGCCCGGCACCAGCGCCGCCGCCAGGAGTCGAAGGAGCGCCGCCAGGTGGGGCGCCGCCGCCCCGGCCACGACGCTTGCCCCGTCCCTTGGGACGAGGCTGGCCGGTGGTGTCGGAGGTGCCGGAGGAAGACCCGGTGCCGGCGTAGAGGGCCTCCCCGGCTTCAGCCTTGGCGTCGTGCTGCATCTGGAGCTCCGCCAGCAGCAGGTAGGAGCGCGCGGTCATGAAAGTGTGTGGCGGATTCCGGTCGGCGAAGCTGGCGCGGAGGGAGCGGAACTTGGTGTTGAGGCCGCGCAGGAGGTTGAGCACCTGGCTGGGCTCAGACACGGGCATGTTGATGTCGCGGAGGCCGTCGGCGAGTTGCTTCAGCTTGGCGGTGTACTGCGTGATGGTCATGTCACCTTGATTGATCGAGCGGAACTCGGTCTCAAGGTAGACAGACCGTTGGACGGCGTTGTCACGGAAGACGCCTTCGATGTCGCTCCACACGGTGAAGGCAGAGGCGCGGGGCTTGTAGACGACGTCGAAGACGTTCTTGGCGATGGAGTTGTGCAGCCAATTGACCACGCAGTGATCCGCACGGCGCCACTCGGCAGTGCGGAGGTCGAGAGCGGGCGGCTCCTGAACATGGGCCTCAAGGCCGAACTTGCCGAGGACCGATTCGAAGCTGTAGCGCCACTGGCTGTAGTTGGAGACGTCGAGATCGAGGACGACCGGGACGTGGGAGCGGATGTTGACGGTTTGAAGAACAGAGGTGGAAGGCGCCGGCACAGGCTCTTCGTCAGAGGTGGACGAGGCGTCGGAAGCGCCGGAGCTGTGCGACATGGCTAGCAAGGGAGAGGTAGCGGAAGACTAAGATCAGAGGGTCACTGATACCATGTAGAAGGAGATTTGGATCAACCGTAACTTTCATTGATCAATGGAGCTTATATTTATACATGTACAACAAGGCTTGGGAGTTGCCTGGGCCTAACTAATCCCCTGATCTAAGGGACGTGCAGCGGTGCGAGCGGAGCGAGGAGCGCGGCGTCGTGCGCGGGGTGCGCGTCGTGCGCGTGGAGCGCGCCGCGAGAGTCTGACGAAGCCGTTCGCCAACACTGAGTTATCTGCAATCTTATCTGATTTTAGCATTGGTATCTCCATTAGTGCTTGTGGTATTTCTCCTGAAAGGCTATTATTGGATATGTCTACATACTTAAGGAAGTTTAGGCTATTGATCCAGGTTGGTATAGGTCCACTGAGTTAATTGTTGGATAAATCTAAAACTGCCAAATTTCCGAGCTTTGAGAGCCAACTAGGTATTTTTCCAGTCAATGCACAATCATGTATGCTAATACCAAAAATATTCTCGAAACCATCAATTGTTTCATCCTGTGGCATAGCTTCGTGCATGAAGTTGCCCCCAATTAACAAGACATTGAGGTTCCTTAAGCTCTTGAGTATGTGAAGAGTATTTTTGATATCTGTAAAATTGTTGTAGGAAAGAGATAAGAAGGTGATAGAATTCAGATTCCGTATGTTTTTTGTCAACTGGCCGTGAAGCCTATTGGAAGATAGCCGCAACCAAGTCAAATTACTACATGAGTATATGCTTTCTGGAATTGTGCCGGTGAAGTGATTCGAGGCAAAATCTAATGTTTTCAGATTGGGTAGATTGGAGTAGTTAACCTTGGCAAGCTCACCCGTCAACTTGTTTCTCCTGAGGTTGATGGTTACTAGATTTGTGCAATCTCCCAATGATGATGGCAGCTCTCCAGATAAGTTGTTGCTGCAAATGTGAAGCTCCTCTAGTCTTTTCAACTAGCCTATAGAATTTGGGATCTTGCCACTGAATCTATTCCATCGAAGATCAACAAAAACAAGATTGATGAGCTTTACGATGAGAGCATCATCAATTGTTCCTTGCAACCCATTGTTAGCGAAAGAGAGGTACTCCAATGATGTGGCATTGAAGAGATCACCTGGGAGAGGCCCTCTGATGTTGTTGGCATTAGCCTTGAGAAGTCTAAGGGCAGAACATTTACCTATTCCAGGGGGGATGTTGCCACTGAACTGGTTGTACCCAAGATCAAGAACAGCAAAAGATGTCGAGCTGCTGCAGAAGGAGGAAGGTATGTGCCCTGTAAAACTGTTGTTGCTCGCGTTGATTGCGACCAGGTTCCTCATTTTCTCCCATGTGATGGATGGAAACTCTCCTGTAAACCGGTTGCTTGAGATATTCAGTACCTTCAGTGGCTGGTTAGATACTGATGGATTCAACTCTTGCAGGTCCCCGTTGAGGCGATTGAAGCTGACATCAAGGACGACGATGCTGCCAGAGGACATCAACTCTGCTGGAAGGCTACCAGATAGGGAGTTGTACGACAGGTTGAGGCGCGACAAGCTGGTGAGCTCTCCCAGTGACGGTGAGATTTGCCCTTCGAGGCCTTTTGAGGCTAGATGTACCTCAATTACAGCCCCATCTTCGTTGCAGGTGATGCCTTCCCACAACAGCAGTCCATGCCATTCTGCCATGACATGGCGATGCCACCGTCTTGCGACAGCTCAGCAATGAACCGGAGGAGGGAGCTCTTCTCCTGCTCGACGCAAGCCATGGCGGAGGTGGCCACGATGAGAAGCAGCAGTAGC
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| CDS seq | ATGGCAGAATGGCATGGACTGCTGTTGTGGGAAGGCATCACCTGCAACGAAGATGGGGCTGTAATTGAGGTACATCTAGCCTCAAAAGGCCTCGAAGGGCAAATCTCACCGTCACTGGGAGAGCTCACCAGCTTGTCGCGCCTCAACCTGTCGTACAACTCCCTATCTGGTAGCCTTCCAGCAGAGTTGATGTCCTCTGGCAGCATCGTCGTCCTTGATGTCAGCTTCAATCGCCTCAACGGGGACCTGCAAGAGTTGAATCCATCAGTATCTAACCAGCCACTGAAGGTACTGAATATCTCAAGCAACCGGTTTACAGGAGAGTTTCCATCCATCACATGGGAGAAAATGAGGAACCTGGTCGCAATCAACGCGAGCAACAACAGTTTTACAGGGCACATACCTTCCTCCTTCTGCAGCAGCTCGACATCTTTTGCTGTTCTTGATCTTGGGTACAACCAGTTCAGTGGCAACATCCCCCCTGGAATAGGTAAATGTTCTGCCCTTAGACTTCTCAAGGCTAATGCCAACAACATCAGAGGGCCTCTCCCAGGTGATCTCTTCAATGCCACATCATTGGAGTACCTCTCTTTCGCTAACAATGGGTTGCAAGGAACAATTGATGATGCTCTCATCGTAAAGCTCATCAATCTTGTTTTTGTTGATCTTCGATGGAATAGATTCAGTGGCAAGATCCCAAATTCTATAGGCTAG
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| Protein seq | MAEWHGLLLWEGITCNEDGAVIEVHLASKGLEGQISPSLGELTSLSRLNLSYNSLSGSLPAELMSSGSIVVLDVSFNRLNGDLQELNPSVSNQPLKVLNISSNRFTGEFPSITWEKMRNLVAINASNNSFTGHIPSSFCSSSTSFAVLDLGYNQFSGNIPPGIGKCSALRLLKANANNIRGPLPGDLFNATSLEYLSFANNGLQGTIDDALIVKLINLVFVDLRWNRFSGKIPNSIG |
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| Function | Receptor-like protein 3 [UniProtKB/Swiss-Prot:Q9SHI4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0155900 | OsNip_02t0155900-00 | Chr02 | 3065811 | 3072625 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAGAATGGCATGGACTGCTGTTGTGGGAAGGCATCACCTGCAACGAAGATGGGGCTGTAATTGAGGTACATCTAGCCTCAAAAGGCCTCGAAGGGCAAATCTCACCGTCACTGGGAGAGCTCACCAGCTTGTCGCGCCTCAACCTGTCGTACAACTCCCTATCTGGTAGCCTTCCAGCAGAGTTGATGTCCTCTGGCAGCATCGTCGTCCTTGATGTCAGCTTCAATCGCCTCAACGGGGACCTGCAAGAGTTGAATCCATCAGTATCTAACCAGCCACTGAAGGTACTGAATATCTCAAGCAACCGGTTTACAGGAGAGTTTCCATCCATCACATGGGAGAAAATGAGGAACCTGGTCGCAATCAACGCGAGCAACAACAGTTTTACAGGGCACATACCTTCCTCCTTCTGCAGCAGCTCGACATCTTTTGCTGTTCTTGATCTTGGGTACAACCAGTTCAGTGGCAACATCCCCCCTGGAATAGGTAAATGTTCTGCCCTTAGACTTCTCAAGGCTAATGCCAACAACATCAGAGGGCCTCTCCCAGGTGATCTCTTCAATGCCACATCATTGGAGTACCTCTCTTTCGCTAACAATGGGTTGCAAGGAACAATTGATGATGCTCTCATCGTAAAGCTCATCAATCTTGTTTTTGTTGATCTTCGATGGAATAGATTCAGTGGCAAGATCCCAAATTCTATAGGCTAG
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| Protein seq | MAEWHGLLLWEGITCNEDGAVIEVHLASKGLEGQISPSLGELTSLSRLNLSYNSLSGSLPAELMSSGSIVVLDVSFNRLNGDLQELNPSVSNQPLKVLNISSNRFTGEFPSITWEKMRNLVAINASNNSFTGHIPSSFCSSSTSFAVLDLGYNQFSGNIPPGIGKCSALRLLKANANNIRGPLPGDLFNATSLEYLSFANNGLQGTIDDALIVKLINLVFVDLRWNRFSGKIPNSIG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.346298 | 0.557559 | 0.263913 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0691800 | SBH | 0.548103 | 0.454097 | 1.088344 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06180 | RBH | 0.178056 | 0.515403 | 0.284927 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0156200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004250 | SBH | 0.0 | 0.580820 | 0.631681 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | SBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004170 | SBH | 0.137843 | 1.557139 | 0.736899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004100 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004230 | RBH | 1.051280 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0050200 | RBH | 0.852885 | 2.079683 | 1.239989 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004030 | RBH | 0.022632 | 0.154452 | 0.270819 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0054100 | RBH | 1.8168465 | 1.4792655 | 2.897297 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004550 | RBH | 0.022579 | 0.127643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004160 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004440 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004390 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | RBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004220 | SBH | 0.044252 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004200 | SBH | 0.403792 | 1.642179 | 1.217868 |
