Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0202300 | OGI:11015440 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:5168780-5172092 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCAAATCACATGGTTCGGTATTTATTTGCGTTTTCTCGGATTTGATACATCTAAATGGTGCATCCATAGAGCACAAATGCTTTCAAGGATTATATGATGTTTGCAGTTACTGTACTGTAATATTGGGCTTTATCAGCTGCATGAGGGATACTAGGCGCCTGTTTACCAGACGATGTAGGTTTATCGGTACAGAGGACTGCATTGTCAAAAGAGCAAAAACTAAAAAAACGTCGAACAGCAGGTAGAAAGTAACCCGCATTACAAATCCAAAAGTCTGCCCTTTAAGCTACTCGGAGAGAATAAAACACCATGGCATCATCCTTGTGGTCTCAACCTTCTTAATAATCAAAACAGTGGTGCATCAAACATTTTCCTCTTCCACTTCGTCTCCATCTTCATCGTCGTCTTCATCTTCATAAGGGTCTCCATAAGAGTCTTCATTTTCGTCTTCGTCTTCATGAGAGTCCTCATCTTCATCTTCCTCCACTTCGTCCTGGTCATTGTCATATCCTTCCAAAATCTCGATTTCCTTAAAACTAAAAACTGCACAAAGAAACAAATAAGAATAGCACAGTAAGTTTCAAGAGGTCCAACCTGAAAATTCACTCCAAAATAAAAACTTCAAATCCATTGACAACCCTTCAAAATACAAATTGACATAAAGACTTCATTACTTCTCCATAACTAAAATCTGATTATGTCCACTACTTCATTCAAAGAAAGGAAATATAATAAAATGCCCTCACTTGGAGAAGCATTGGTCCTTTATAATATGGTTGCATCCTATGCTGCATAGTTGCTGGTTTCTCTATAGCCTAGCACACGACAAGGAGAAAATTGCATGGTCTAGGGACTATACGGATACTTATGGCACTTCGTAAATAAGATTTTTGGACACCAGGCCACACCAGGCGCTGGACATAACAAATAAAATCTAGTGTCACCGAAAAAGACTACCTTAGGCAAACAAAACTGCTAAGCAATCTTTCCCAATTATTGTTTTCTAGTAGCTGCTATGATATAACCAGGATGGGTAGTGCAGCAAGCTGTCACACTCAGCACCTCTGGTACGGTAAACTGATAGTTACAGCAGAACAAAGTTTTCTCACAATAATAGAGTTTGACAACGAGATAAAATGGTATGCGAGGTAGTACTTGTGTACATGGCAAATGACATGCAAGTTATAAGATGGCAACATCGACTTTCACAAATATACAACTGATGGGAAAGGAAATCAAATCAAATGATTGAAAGATATAATAACATACATCTAACATACATGTTGACATACTAGTTATGTGATGCAAGAAAATTTTAGAAATCTTAATATGTTTTTGTAAGTAATACTAGCCAAAAGAGTAGTCTAGATAATGTCTTCCCAATCATACCAAATACAGTGCATGCTTTCATTTCCCAATTAATCCATGGTCCTAACATCCGTTTCCCAAGAACTTACAGTTTCGATACTGCTTACTACATTTCACGCGTATGAAGGGAAAAGAAAATTTCAGAAATGTACAAAAAATGAAGAATGTTACGTATGTTAAATGTAGACAGATACTTCAAAACTTTGAGTACTCTCTTATCAACCGTTTCGCATTTGATTTCAACTATCTCAAGATGTGCTGATATTACAAGTGAACTATCCATTGAATGGCAGTTTCCTTTGATTTTCATTCTATGTTTAGGTCCCTGTCAGAAATTAAACATTTTAAGGTCAATAGAAAAATGCCCAAAAATATCAACAAGTAATCAATTGGCCAATTAGAGAAGGTATACCTTGGAACAGATCTGAAGAATGAGATTCTCTAGAACCGGTGCATGTTGAAGAATGCAAGTTAGTGCACTAAAATCATCGGGCACACACCAGTATTCATTGAGTAACAAAGTCTTTAGCTTGGTAAATGTTGGGCGCCATTTCAAATCCCTTTTCAAAATAAACTGCGCGGAGTGCAAAAAAGAAGATAAACAAAAACCACAGAGTTCAAGTGGATATAAGCACATTAATATAAATAATGAGATAATACAAACAACTTAAAGATGGAAGTGCAAGCATACCGATCCACGTTCACTTATCAGCCCCAACGTCTTAGCTTCCGATAAACCTTCCAAAAGCACACAATTGTTGTCCTTGATACCGTAACAAGATTCGCAGTTCTCATGACCACAATCCCCAGAGTCAGACCAAATGCAATAGTCTTTAGTCCAGTTGAGGACTCCAACAAATGCATCAACTAATGATGGCATCCTCTCAAGCACTGGAGCCCTGTCATGGAAGCCATCCAGCTGCAGAGAAACAAGACTCGGGATAGCGATACGTACCCGAGATATCTCACTGAAATAGGAATTGGTTATGCTCAAACGTTTTGCAGAGCTAGATGAGATCTTGGCACAGCCAAATTTACATGACTGAAACACTAGATGTTCCAATGCTGGACAGCTCGAGAAGTTAAGGAAGCTGTCGTTTACCCTTATATTTCGAAGCTGTAGCCTCGTCAAGTGCTGGGAGACAAGTGGCATCTCATCTATCACAAATGAGTGGTAGTATCCGACGTCGAGCCAGAGGAACCGAGCCTTGTGGATAAGAGCATGCCTGAACCATAGGTTCACCCGAGCTGTGTCCTCGATGTCCATGTCGCCGTAATAATCGAACATTAGCACGCACGTGTCGAGAGGGGCTCCATCACGGAGTAGCAGCAGACGGTCGAGAAACTCCTTCTGTTTCTTCACGCTTCCCAGATAGTCGCAGTCCTCGCCAATGCGCAGCCCCGTGGCGGACTTCCAGAGGTGGAGCCATCGCCGAGCCAGCAGGCACGTCCGGACAGCCTCCTGCGCCGGTAGGAAGGAGAGCACGTGGTGGAGCACCTCATCCGGGAGGTCCCCTATGCGGTCTCCCCCGGTCGAGCCAGGCGATTCCTTGGGCATCTTCCGCGGAGACATTCCGTCGAACAGGTTGCGGGCGTCGCCGCGGCGCCACCCCTCCCCTCCCAGCGTAGCAAGAACAGCTCAGGTAACAGTAACACCAGGAGCGAGGGCTGTAAGGGTCAGGACCAAGCTGCCCACATCGCCACCGGCAGCCTCCCCCCGGCCACCGGACACCGACCAGAGAGTGGAACGCGCGGCGCCCGCGTTGCAAGGATACGGATACGCCAATGGCGCGGCGCGACGCTGGAGAGGAGAAGCGCGACACGAGCGCGGGAAGCGGACGGAGAGCTCTGGATCGGAGGGGAGGAAAGGGTGGGATGCTGTGCTGGGTGGAGAAGACGGAGAGTTTGTAGTCAGTTTCTATCTCTACTGAGGTGAGTCATGACT
More
|
||||||||||
| CDS seq | GCATTGGAACATCTAGTGTTTCAGTCATGTAAATTTGGCTGTGCCAAGATCTCATCTAGCTCTGCAAAACGTTTGAGCATAACCAATTCCTATTTCAGTGAGATATCTCGGGTACGTATCGCTATCCCGAGTCTTGTTTCTCTGCAGCTGGATGGCTTCCATGACAGGGCTCCAGTGCTTGAGAGGATGCCATCATTAGTTGATGCATTTGTTGGAGTCCTCAACTGGACTAAAGACTATTGCATTTGGTCTGACTCTGGGGATTGTGGTCATGAGAACTGCGAATCTTGTTACGGTATCAAGGACAACAATTGTGTGCTTTTGGAAGGTTTATCGGAAGCTAAGACGTTGGGGCTGATAAGTGAACGTGGATCGTTTATTTTGAAAAGGGATTTGAAATGGCGCCCAACATTTACCAAGCTAAAGACTTTGTTACTCAATGAATACTGGTGTGTGCCCGATGATTTTAGTGCACTAACTTGCATTCTTCAACATGCACCGGTTCTAGAGAATCTCATTCTTCAGATCTGTTCCAAGGGACCTAAACATAGAATGAAAATCAAAGGAAACTGCCATTCAATGGATAGTTCACTTGTAATATCAGCACATCTTGAGATAGTTGAAATCAAATGCGAAACGGTTGATAAGAGAGTACTCAAAGTTTTGAAGTATCTGTCTACATTTAACATACTTTTTAGTTTTAAGGAAATCGAGATTTTGGAAGGATATGACAATGACCAGGACGAAGTGGAGGAAGATGAAGATGAGGACTCTCATGAAGACGAAGACGAAAATGAAGACTCTTATGGAGACCCTTATGAAGATGAAGACGACGATGAAGATGGAGACGAAGTGGAAGAGGAAAATGTTTGA
More
|
||||||||||
| Protein seq | ALEHLVFQSCKFGCAKISSSSAKRLSITNSYFSEISRVRIAIPSLVSLQLDGFHDRAPVLERMPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDNNCVLLEGLSEAKTLGLISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFKEIEILEGYDNDQDEVEEDEDEDSHEDEDENEDSYGDPYEDEDDDEDGDEVEEENV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0202300 | OsNip_11t0202300-02 | Chr11 | 5168780 | 5171213 | - | RAP2018-11-26 | ||
| CDS seq | GCATTGGAACATCTAGTGTTTCAGTCATGTAAATTTGGCTGTGCCAAGATCTCATCTAGCTCTGCAAAACGTTTGAGCATAACCAATTCCTATTTCAGTGAGATATCTCGGGTACGTATCGCTATCCCGAGTCTTGTTTCTCTGCAGCTGGATGGCTTCCATGACAGGGCTCCAGTGCTTGAGAGGATGCCATCATTAGTTGATGCATTTGTTGGAGTCCTCAACTGGACTAAAGACTATTGCATTTGGTCTGACTCTGGGGATTGTGGTCATGAGAACTGCGAATCTTGTTACGGTATCAAGGACAACAATTGTGTGCTTTTGGAAGGTTTATCGGAAGCTAAGACGTTGGGGCTGATAAGTGAACGTGGATCGTTTATTTTGAAAAGGGATTTGAAATGGCGCCCAACATTTACCAAGCTAAAGACTTTGTTACTCAATGAATACTGGTGTGTGCCCGATGATTTTAGTGCACTAACTTGCATTCTTCAACATGCACCGGTTCTAGAGAATCTCATTCTTCAGATCTGTTCCAAGGGACCTAAACATAGAATGAAAATCAAAGGAAACTGCCATTCAATGGATAGTTCACTTGTAATATCAGCACATCTTGAGATAGTTGAAATCAAATGCGAAACGGTTGATAAGAGAGTACTCAAAGTTTTGAAGTATCTGTCTACATTTAACATACTTTTTAGTTTTAAGGAAATCGAGATTTTGGAAGGATATGACAATGACCAGGACGAAGTGGAGGAAGATGAAGATGAGGACTCTCATGAAGACGAAGACGAAAATGAAGACTCTTATGGAGACCCTTATGAAGATGAAGACGACGATGAAGATGGAGACGAAGTGGAAGAGGAAAATGTTTGA
More
|
|||||||
| Protein seq | ALEHLVFQSCKFGCAKISSSSAKRLSITNSYFSEISRVRIAIPSLVSLQLDGFHDRAPVLERMPSLVDAFVGVLNWTKDYCIWSDSGDCGHENCESCYGIKDNNCVLLEGLSEAKTLGLISERGSFILKRDLKWRPTFTKLKTLLLNEYWCVPDDFSALTCILQHAPVLENLILQICSKGPKHRMKIKGNCHSMDSSLVISAHLEIVEIKCETVDKRVLKVLKYLSTFNILFSFKEIEILEGYDNDQDEVEEDEDEDSHEDEDENEDSYGDPYEDEDDDEDGDEVEEENV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0202300 | OsNip_11t0202300-01 | Chr11 | 5168904 | 5172092 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCTCCGCGGAAGATGCCCAAGGAATCGCCTGGCTCGACCGGGGGAGACCGCATAGGGGACCTCCCGGATGAGGTGCTCCACCACGTGCTCTCCTTCCTACCGGCGCAGGAGGCTGTCCGGACGTGCCTGCTGGCTCGGCGATGGCTCCACCTCTGGAAGTCCGCCACGGGGCTGCGCATTGGCGAGGACTGCGACTATCTGGGAAGCGTGAAGAAACAGAAGGAGTTTCTCGACCGTCTGCTGCTACTCCGTGATGGAGCCCCTCTCGACACGTGCGTGCTAATGTTCGATTATTACGGCGACATGGACATCGAGGACACAGCTCGGGTGAACCTATGGTTCAGGCATGCTCTTATCCACAAGGCTCGGTTCCTCTGGCTCGACGTCGGATACTACCACTCATTTGTGATAGATGAGATGCCACTTGTCTCCCAGCACTTGACGAGGCTACAGCTTCGAAATATAAGGTGA
More
|
|||||||
| Protein seq | MSPRKMPKESPGSTGGDRIGDLPDEVLHHVLSFLPAQEAVRTCLLARRWLHLWKSATGLRIGEDCDYLGSVKKQKEFLDRLLLLRDGAPLDTCVLMFDYYGDMDIEDTARVNLWFRHALIHKARFLWLDVGYYHSFVIDEMPLVSQHLTRLQLRNIR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.533170 | 0.202898 | 1.417064 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g09680 | RBH | 1.041908 | 0.135368 | 0.361848 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0202300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006570 | SBH | 0.054690 | 1.640683 | 0.416882 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006550 | SBH | 0.142942 | 0.162571 | 0.531425 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006530 | SBH | 0.629927 | 3.859250 | 2.320578 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006430 | SBH | 0.026985 | 0.037452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006420 | SBH | 0.965144 | 0.399107 | 1.957737 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0089800 | SBH | 0.4881505 | 1.281045 | 0.838145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006440 | SBH | 0.080080 | 0.0 | 0.486420 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0085700 | SBH | 5.4372965 | 2.440776 | 7.4983255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006430 | SBH | 0.084143 | 0.015012 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006500 | SBH | 0.170263 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006510 | SBH | 5.264083 | 0.390062 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006500 | SBH | 0.873359 | 0.0 | 0.723187 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006540 | SBH | 0.147365 | 0.486698 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006530 | SBH | 0.081235 | 0.000000 | 0.558527 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006370 | SBH | 0.242504 | 2.849076 | 0.510408 |
