Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0157501 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:3136270-3138125 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATATTTCGTGCACAACTAGACTAAGCTTGTAACCGGACATGCTGCTTGGATCTTAACAGCAGCTCAAACTGACCAAAGTTATCACAAAAAGTACATCAGATCTGCAATAGGACTAGCCAAAAAAAACCTTGATAATACTATTTGATCATATAGCACACCTACACAGAAGAATGCGACAAAAGCAATCGCAAAGATGGTCTTTTGAGTGCTTTGTTCTCTGGAGTCTGAAAACTGGAGGTGTTTTTGCCGATGCACAGGTGCGAATGAGCGTATGACCACACAGCTTTGGGTTCCCATCAAAACCCCAATACTCATATCCAATTGGAACTGACCCCTCTAAGTCGTTGTTAGAAACATCAAATATTGAAAGTGAGTGCACATTGTTCAGTCCTGGTGGGATTGAACCTGTGAGATGGAGGTTAGACAATTCTAACACTTGCAGATTTGTCAGGTTGAAAAGTTTCGGTGGAATATGCCCTGAAGAGCTGTTGAAGCTCAAGAAGAGCACTGTGAGTGATTTCAGCTGGCCGACCTCTGAAGGAATTGCACCAGTAAGCTTATTGTTTCCAAGATTTAGCATTGCAGGGAGAGCATTGGTCATACCATATGTAAGTGATGGCTCTTCATAATCAGCATAAACAGGAAGTTCAAATACCCTTGGATCCAAATGATTGTAGCATTGGCATCTCCATTATTGCTACTGGGAGATCCCTTCTAAGATTGTTGTTTGATATATCTATGAAGTAGAGGAAGTTCAGGCCATGGATCCAGTCTGATATTGGTCCAGTGAGTTAATTGTAGGATAGATCCAAAACTTCCATTTTGAGCAGTTTTGAAAGCCAACGAGGTATTTTTTCCAGACAACGAGCAAGAAGGTACCGAAAGAACCTGAAGACTCTGAAAACCATCAACTATTGGTATGCCATCTGGCATGGCCTTGCCCTTGAAGTTGATTCCCATAATCAAAGTGTTGACTTTTTGCAGTTCTTGAGTGCATGAATTGCATTTGAGATATTCCCAAAAACATTGTTGTCAAGTGATAGGAACAAGAGGTACTTCAGGTTCTGCCAGTTTCATTTGGAAGGAAGCTGGAATTTTTTTTCCCAATGTAATGAGTAGAGGGTATAGTCTGCCCAGTTTCAGGGTTTCTCCCCCTCCAGTCGGAGGCTGTGCCTCGGACCATGCTCGACATGCTTTTGTCGATGTAACTATACTTTTGTACTTTGTTTTTTTTTTACTAATTCTTAATGAAATTGGTTGGCCACTCTTTGGCTGACCCGGCAAAAACGAGGGACTTCAGGTTGTCTATTCTTGGTGACAACTGGCCATAGAATTTGTTTGAAGATAGCTGTAATGTGGTTAGATTGCTGCATCTGTAGATGCTATCTAGAATTTCTCCAGTGAACTTGTTCGACATAAGATCCAAAAGTTTCAGATTGGGCAGTCTGGAGAAGTTAACCTTCGAAAGCTCTCCTGTGAAGTTGTTGTGCTTGAGGTTGATGATCTTGAGACTTGTAAAGTTGCTTAGAGATGATGGAAACACTCTGGACATCCTGTTGTTATCCAACTGGAGCTCCTCCAATCTATTAAGCTGACCTATGGAACCCGGAATATCACCGATGAAGTTGTTATGCTTGATGCCGATGATTTTGAGACTAGTACAGTTGCCTAGAGCTGATGGCAACTCCCCAGACATGCTGAGTTTAGTCCAAATGGAGCTCCTCCAATCTCTTAATCTGACCTATGGAACCCGGAATATCTCCGATGAAGTTATGCTTGATGCTGATGGTTTTGAGACTAGTACAGTTACCTAGAGCTGATGGCAACTTCCCAGACATGTTAGGTGTAGCCCAAAT
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| CDS seq | ATGTCTGGGGAGTTGCCATCAGCTCTAGGCAACTGTACTAGTCTCAAAATCATCGGCATCAAGCATAACAACTTCATCGGTGATATTCCGGGTTCCATAGGTCAGCTTAATAGATTGGAGGAGCTCCAGTTGGATAACAACAGGATGTCCAGAGTGTTTCCATCATCTCTAAGCAACTTTACAAGTCTCAAGATCATCAACCTCAAGCACAACAACTTCACAGGAGAGCTTTCGAAGGTTAACTTCTCCAGACTGCCCAATCTGAAACTTTTGGATCTTATGTCGAACAAGTTCACTGGAGAAATTCTAGATAGCATCTACAGATGCAGCAATCTAACCACATTACAGCTATCTTCAAACAAATTCTATGGCCAGTTGTCACCAAGAATAGACAACCTGAATACCTCTTGTTCCTATCACTTGACAACAATGTTTTTGGGAATATCTCAAATGCAATTCATGCACTCAAGAACTGCAAAAAGTCAACACTTTGATTATGGGAATCAACTTCAAGGGCAAGGCCATGCCAGATGGCATACCAATAGTTGA
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| Protein seq | MSGELPSALGNCTSLKIIGIKHNNFIGDIPGSIGQLNRLEELQLDNNRMSRVFPSSLSNFTSLKIINLKHNNFTGELSKVNFSRLPNLKLLDLMSNKFTGEILDSIYRCSNLTTLQLSSNKFYGQLSPRIDNLNTSCSYHLTTMFLGISQMQFMHSRTAKSQHFDYGNQLQGQGHARWHTNS |
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| Function | Tyrosine-sulfated glycopeptide receptor 1 [UniProtKB/Swiss-Prot:Q9C7S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0157501 | OsNip_02t0157501-00 | Chr02 | 3136270 | 3138125 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCTGGGGAGTTGCCATCAGCTCTAGGCAACTGTACTAGTCTCAAAATCATCGGCATCAAGCATAACAACTTCATCGGTGATATTCCGGGTTCCATAGGTCAGCTTAATAGATTGGAGGAGCTCCAGTTGGATAACAACAGGATGTCCAGAGTGTTTCCATCATCTCTAAGCAACTTTACAAGTCTCAAGATCATCAACCTCAAGCACAACAACTTCACAGGAGAGCTTTCGAAGGTTAACTTCTCCAGACTGCCCAATCTGAAACTTTTGGATCTTATGTCGAACAAGTTCACTGGAGAAATTCTAGATAGCATCTACAGATGCAGCAATCTAACCACATTACAGCTATCTTCAAACAAATTCTATGGCCAGTTGTCACCAAGAATAGACAACCTGAATACCTCTTGTTCCTATCACTTGACAACAATGTTTTTGGGAATATCTCAAATGCAATTCATGCACTCAAGAACTGCAAAAAGTCAACACTTTGATTATGGGAATCAACTTCAAGGGCAAGGCCATGCCAGATGGCATACCAATAGTTGA
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| Protein seq | MSGELPSALGNCTSLKIIGIKHNNFIGDIPGSIGQLNRLEELQLDNNRMSRVFPSSLSNFTSLKIINLKHNNFTGELSKVNFSRLPNLKLLDLMSNKFTGEILDSIYRCSNLTTLQLSSNKFYGQLSPRIDNLNTSCSYHLTTMFLGISQMQFMHSRTAKSQHFDYGNQLQGQGHARWHTNS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.154935 | 0.303747 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0156200 | SBH | 0.250807 | 0.765182 | 1.044408 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06210 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0157501 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004310 | RBH | 0.053326 | 2.659473 | 0.663938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | SBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008430 | SBH | 0.369193 | 0.439994 | 0.324075 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004250 | SBH | 0.061636 | 0.022630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004110 | SBH | 2.410689 | 8.209851 | 3.171613 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0056900 | SBH | 0.077009 | 0.213037 | 0.6367415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0054800 | SBH | 0.5707365 | 1.043263 | 0.1931665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004620 | SBH | 0.050025 | 0.093740 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003980 | SBH | 0.070042 | 4.234505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004260 | SBH | 0.000000 | 0.353235 | 0.384476 |
