Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0024900 | OGI:02001240 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:26054680-26057797 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atccaacattccaactcgaaagtatacctaccacctggcaaacttgagcagacccggctgccgttttatgcgctccggccgaacaaaggtgcgctattctatctgctggtaatgtttccgctctggcttcatgccttcagatgcttgccgtttttaccgttgagggtgaattgtgcgcatgtgacaaaagttattcaaaccgttatgctttaaatgacggtagttatttctttcatttgatcaagcgttccgttatgagggatttaaggccttctcaaaaacatcacattgaatctttggacacatgtatgaaacattaaatatagataaaaagaaaaactaattgtatagtttgcatataaatcgtgagacgaatcttttgagcctaattgtgctaacgacggattaattaggctagttatgaaattagttttttcattcgtatcgaaaaacccctttcgacatccagtcaaacgtccgatgtgacactcaaaaattttatttcgccagctaaacaaggcctaagtttaccaccatattttttttaaaaactcaagtttaccgaagttagagagtgcatttggcctgtctacctaccccaccccccaaaaaaaaaccctttctttcctttgtttcctctaatctccagggatcctgtacagtgttttcacatacttaatataagcacatcctaccgaggtttAaaaaaaaagagtgcatttcgttgcacaaagtaggtccattcggcggtgataattaatggtaggtaacaattaatctttatgcttcattctttttaaactttgcaggaaaagtcacctatgtcgaccaatcatccggtgaaactcgccatgcttatgcttttagcattattgttgttgtcttatggagttggcagcatccgttgcgcaacggccacagacaacagcacggatatgtcatcgttgctcgaattcaagaaggccatcaatgatccaacgggggcattgaacagttggagcacggtcgttccccattgccagtggatgggtgttaattgtagccgaaggcatgccggccgagtcacggcactcaaccttgctgcccaaggcttgtcgggttcgattcccgcctctgtgggaaacctgacattccttcgtacacttgacctgtccagtaataacttcttcggccagatgccccatcttaacaatctccagaagatgcaaatccttaacctgagctataattcattagatggcataataccagacacactcaccaattgttccagcctcaaggaattacatctctatcataacactctaaagggtgaaattccaaggaacataggtctccttactaatctagttttgttggcccttaacagtaacaatcttaccggttccatccctcaatctgtcggtaacattacccatttagataaaatctatcttgagttgaatcaacttggaggaaacattcctgatgaacttagccaattttccaatataacagtgctggggctaggggataatatgctatcaggtagtataccatcaagcctctttaatttgtcctctcttcaagctctagagttgagcggaaatcagttaggtgggactctaccagttaacatgggtgatcatctcactaatctcaaaatactctatatgagccacatcatgctcgaaggtcacatacctgcttccttaggcaatgcttcgatgctacaagaaatagttctacaatccaacaatttcactggccggatccctacttccttgggaaagcttttacgactgtctaagctagaccttcagctaaacacgcttgaagcaaaagatgctgaaggctgggagttcctggatgcgttgagaaactgcagtgttctacgagtgctcgcattagctaataatcagctacagggaataataccaaattcaattggtagcttgcctggcactgttcaatatctcattttgggtggaaacgaactatctggcataattccacctagtatagggaacttctccaggttgattcaactgacactagatgaaaacagtctcactggtaccataggcaatggattggaaatctgaaatacttgcaattactacatcttgggcagaataacttcactgggcccattccacccactattggcaatcttacagagttgacaaagctatacctgacgaataataactttgaaggctccatatatatatagcgcaacttggtaaagcttagaacacactagccggattggttatctctaacgggcttcaagcctcatctctttcgggtaggacccctgtcactaagtaaaggtcactgatgtgagaaaacatctcaatcgggcaccaggttatcacgaatgtatgttatctcaatcgggccaacaacaaagcccgtcacagataagattgaccaagcaatacgagtcaaaccaggttaggtaggagcccatcacggatgatttatctcaatcgggcacactactaagcctgtcacggatgactaatcatctaaatcgggccttaaggaacaacccgtcaccgataggtttgacccatctgttgagtcaaaatagtctgagttcggatgacttgtctctatcgggcttacactaagagcccgtcacggatgactatatctctattggtctttgttagagtccatcacagatgactatatctctttcgggcattttaaaactgcccgtcagggatgagtatgtcagcaaaaaaataaattttgttttttttttctagccttaggcctttgctagccatgcccgctgcaaaaatgacagaagaatatatgtatagtcccattcccagcatccattcaatattttagtccattcacatattccatcacagcacagccaattcacaaaatcaaacatatatacattcacatccacataaccattcacatttatatgtcattcacattcTtttttactctccaaaccgccgacatgcatcaaaacctgcaaactgagttataaattggaacaggtttatatataattagaaatgtaaatatatacataacatcgtgcagaattgtattacaaagaatatttacataaatcaaatgtttgtcgcaagcattgcaaatgttc
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| CDS seq | atgtcgaccaatcatccggtgaaactcgccatgcttatgcttttagcattattgttgttgtcttatggagttggcagcatccgttgcgcaacggccacagacaacagcacggatatgtcatcgttgctcgaattcaagaaggccatcaatgatccaacgggggcattgaacagttggagcacggtcgttccccattgccagtggatgggtgttaattgtagccgaaggcatgccggccgagtcacggcactcaaccttgctgcccaaggcttgtcgggttcgattcccgcctctgtgggaaacctgacattccttcgtacacttgacctgtccagtaataacttcttcggccagatgccccatcttaacaatctccagaagatgcaaatccttaacctgagctataattcattagatggcataataccagacacactcaccaattgttccagcctcaaggaattacatctctatcataacactctaaagggtgaaattccaaggaacataggtctccttactaatctagttttgttggcccttaacagtaacaatcttaccggttccatccctcaatctgtcggtaacattacccatttagataaaatctatcttgagttgaatcaacttggaggaaacattcctgatgaacttagccaattttccaatataacagtgctggggctaggggataatatgctatcaggtagtataccatcaagcctctttaatttgtcctctcttcaagctctagagttgagcggaaatcagttaggtgggactctaccagttaacatgggtgatcatctcactaatctcaaaatactctatatgagccacatcatgctcgaaggtcacatacctgcttccttaggcaatgcttcgatgctacaagaaatagttctacaatccaacaatttcactggccggatccctacttccttgggaaagcttttacgactgtctaagctagaccttcagctaaacacgcttgaagcaaaagatgctgaaggctgggagttcctggatgcgttgagaaactgcagtgttctacgagtgctcgcattagctaataatcagctacagggaataataccaaattcaattggtagcttgcctggcactgttcaatatctcattttgggtggaaacgaactatctggcataattccacctagtatagggaacttctccaggttgattcaactgacactagatgaaaacagtctcactggtaccataggcaatggattggaaatctga
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| Protein seq | MSTNHPVKLAMLMLLALLLLSYGVGSIRCATATDNSTDMSSLLEFKKAINDPTGALNSWSTVVPHCQWMGVNCSRRHAGRVTALNLAAQGLSGSIPASVGNLTFLRTLDLSSNNFFGQMPHLNNLQKMQILNLSYNSLDGIIPDTLTNCSSLKELHLYHNTLKGEIPRNIGLLTNLVLLALNSNNLTGSIPQSVGNITHLDKIYLELNQLGGNIPDELSQFSNITVLGLGDNMLSGSIPSSLFNLSSLQALELSGNQLGGTLPVNMGDHLTNLKILYMSHIMLEGHIPASLGNASMLQEIVLQSNNFTGRIPTSLGKLLRLSKLDLQLNTLEAKDAEGWEFLDALRNCSVLRVLALANNQLQGIIPNSIGSLPGTVQYLILGGNELSGIIPPSIGNFSRLIQLTLDENSLTGTIGNGLEI |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0024900 | OsNaBo_02g0024900.01 | Chr02 | 26055501 | 26056763 | + | NAM | ||
| CDS seq | atgtcgaccaatcatccggtgaaactcgccatgcttatgcttttagcattattgttgttgtcttatggagttggcagcatccgttgcgcaacggccacagacaacagcacggatatgtcatcgttgctcgaattcaagaaggccatcaatgatccaacgggggcattgaacagttggagcacggtcgttccccattgccagtggatgggtgttaattgtagccgaaggcatgccggccgagtcacggcactcaaccttgctgcccaaggcttgtcgggttcgattcccgcctctgtgggaaacctgacattccttcgtacacttgacctgtccagtaataacttcttcggccagatgccccatcttaacaatctccagaagatgcaaatccttaacctgagctataattcattagatggcataataccagacacactcaccaattgttccagcctcaaggaattacatctctatcataacactctaaagggtgaaattccaaggaacataggtctccttactaatctagttttgttggcccttaacagtaacaatcttaccggttccatccctcaatctgtcggtaacattacccatttagataaaatctatcttgagttgaatcaacttggaggaaacattcctgatgaacttagccaattttccaatataacagtgctggggctaggggataatatgctatcaggtagtataccatcaagcctctttaatttgtcctctcttcaagctctagagttgagcggaaatcagttaggtgggactctaccagttaacatgggtgatcatctcactaatctcaaaatactctatatgagccacatcatgctcgaaggtcacatacctgcttccttaggcaatgcttcgatgctacaagaaatagttctacaatccaacaatttcactggccggatccctacttccttgggaaagcttttacgactgtctaagctagaccttcagctaaacacgcttgaagcaaaagatgctgaaggctgggagttcctggatgcgttgagaaactgcagtgttctacgagtgctcgcattagctaataatcagctacagggaataataccaaattcaattggtagcttgcctggcactgttcaatatctcattttgggtggaaacgaactatctggcataattccacctagtatagggaacttctccaggttgattcaactgacactagatgaaaacagtctcactggtaccataggcaatggattggaaatctga
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| Protein seq | MSTNHPVKLAMLMLLALLLLSYGVGSIRCATATDNSTDMSSLLEFKKAINDPTGALNSWSTVVPHCQWMGVNCSRRHAGRVTALNLAAQGLSGSIPASVGNLTFLRTLDLSSNNFFGQMPHLNNLQKMQILNLSYNSLDGIIPDTLTNCSSLKELHLYHNTLKGEIPRNIGLLTNLVLLALNSNNLTGSIPQSVGNITHLDKIYLELNQLGGNIPDELSQFSNITVLGLGDNMLSGSIPSSLFNLSSLQALELSGNQLGGTLPVNMGDHLTNLKILYMSHIMLEGHIPASLGNASMLQEIVLQSNNFTGRIPTSLGKLLRLSKLDLQLNTLEAKDAEGWEFLDALRNCSVLRVLALANNQLQGIIPNSIGSLPGTVQYLILGGNELSGIIPPSIGNFSRLIQLTLDENSLTGTIGNGLEI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0024900 | OsNaBo_02g0024900.02 | Chr02 | 26054680 | 26057797 | + | IsoSeq | ||
| CDS seq | atccaacattccaactcgaaagtatacctaccacctggcaaacttgagcagacccggctgccgttttatgcgctccggccgaacaaaggaaaagtcacctatgtcgaccaatcatccggtgaaactcgccatgcttatgcttttagcattattgttgttgtcttatggagttggcagcatccgttgcgcaacggccacagacaacagcacggatatgtcatcgttgctcgaattcaagaaggccat
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| Protein seq | IQHSNSKVYLPPGKLEQTRLPFYALRPNKGKVTYVDQSSGETRHAYAFSIIVVVLWSWQHPLRNGHRQQHGYVIVARIQEGH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 21.950468 | 8.298501 | 18.806587 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0615500 | SBH | 1.178434 | 1.962854 | 0.176804 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40180 | SBH | 1.164243 | 0.429848 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025070 | SBH | 2.266135 | 0.000000 | 2.324937 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | SBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025060 | SBH | 8.845984 | 0.000000 | 17.735216 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004250 | SBH | 0.061636 | 0.022630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024770 | RBH | 26.666389 | 0.357979 | 33.833797 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0396200 | SBH | 0.414616 | 0.170244 | 0.1532725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024620 | SBH | 0.032811 | 0.0 | 0.078690 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0425400 | RBH | 1.672875 | 0.3362355 | 3.077142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008750 | SBH | 0.030803 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003980 | SBH | 0.070042 | 4.234505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024890 | SBH | 0.206270 | 0.000000 | 0.311611 |
