Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0004370 | OGI:02001240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3092921-3095062 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatcgtaatcggtttaaccgaaaatatctagatacaactatctgatcatatagcactcctattccaaagaatacacaaaaagcaatcacagggacgaccttgttgatgtaatctatttttgagcttgggggagacaaatctgcttctgctacattgcaacggtgcaaaagcatcgggctgcatagctctgggtttccagcaaaactagaacttggaaatgtgctgaactggcctccaattggtacagacccttttagatcattgtaggaaacattgaattcagaaaggaagtgaaggttcaccagtgctggagggattgcacctgtcagatgattgtatgacaggtctagaaccatcagattcttgaggttgctgatcgattgtgggatctccctgtttaggttgttgaagctcaagttgagtgaaacgagtgctttcaactcaccgatctcattggggatcacaccagtgaatttgttgttacctagattcagcattttagggagagcagtggccgtatggtactgaaaacacaaacatgcacctgcatagactgaaaacgggaagccccttgggactgagctatctgaaacattgtccgattttagcattggcatctccattagtgctgctggtatttctcctgtaaggctattattggatatgtctacatacttaaggaagtttaggctattgatccaggttggtataggtccactgagtttattgttgtataaagctaaaactttcaatttttttagctttgataaccactttggaatttttccagaaagtgtacagtcatttatgctaagacccttaatattctcaaaaccatcaattgtttcatcctgtggcatagcttcatgcatgaagtttcccccgattagcaaggtagtgaggttccttaagctcttgagtatgtgaattgtatttgtgatatttgtgaaattgttgtaggaaagtgacacgaaggcgatggacttcaaatttcctattttatttgtaagctggccgtgaagcctattggaagatagccgtaaccaagtcaaattactgcatgaatagatgctttctggaattatgccagtgaagtaatttgtggacaaatctagtgttttcagatttggcaggttggagaagttaaccttagcaagctctcccgtgaaactgttgctcctgaggttgatggttgctagatttgtgcaattgcccaaggatgatggcaactctccagataagttgttgttattcatgtgaagctcctctagtctcttcaactggcctatagaatttgggatcttgccactgaatctattccatccaagatgaacaaaaacaagattgatgagctttacaacgagagcatcatcaattgttccttgcaatccattgttagcgaaagagaggtactccaatgatgtggcattgaagagatcaccagggaaagaccctttgatgttgttgtcatcagccttgagcagtctaagggcagaacatttacctattccaggggggatgttgccactgaactggttgtacccaagatcaagaacagcaaaagatgtcgagctgctgcagaaggaggaaggtatgtgccctgtaaaactgttgttgctcgcattgattgcgaccaggttcctcattttctcccatgtgatggatggaaactctcctgtaaaccggttgcttgagatattcagtacctgcagtggctggtcagatactgatggattcaactcttgcaggtccccgtcgaggcgattgaagctgacatcaaggacgacgatgctaccagaggacatcaactctgctggaaggccaccagatagggagttgtacgacaggttgaggcgcgacaagctggtgagctctcccagtgacggtgagatttgcccttcgaggcctttagaggctagatggacctcaattacaaccccatcttcgttgcaggtgatgccttcccacacacagcagtccgtgccattctgccacgacatggcgatgccaccgtcttgcgacagctcagcaatgaaccggaggagggagctcttctcctgctcgacgcaagccatggcggaggtggccacggcgagaagcagcagcaataatgcagcagtagcgaggccagaggaaggcat
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| CDS seq | atgccttcctctggcctcgctactgctgcattattgctgctgcttctcgccgtggccacctccgccatggcttgcgtcgagcaggagaagagctccctcctccggttcattgctgagctgtcgcaagacggtggcatcgccatgtcgtggcagaatggcacggactgctgtgtgtgggaaggcatcacctgcaacgaagatggggttgtaattgaggtccatctagcctctaaaggcctcgaagggcaaatctcaccgtcactgggagagctcaccagcttgtcgcgcctcaacctgtcgtacaactccctatctggtggccttccagcagagttgatgtcctctggtagcatcgtcgtccttgatgtcagcttcaatcgcctcgacggggacctgcaagagttgaatccatcagtatctgaccagccactgcaggtactgaatatctcaagcaaccggtttacaggagagtttccatccatcacatgggagaaaatgaggaacctggtcgcaatcaatgcgagcaacaacagttttacagggcacataccttcctccttctgcagcagctcgacatcttttgctgttcttgatcttgggtacaaccagttcagtggcaacatcccccctggaataggtaaatgttctgcccttagactgctcaaggctgatgacaacaacatcaaagggtctttccctggtgatctcttcaatgccacatcattggagtacctctctttcgctaacaatggattgcaaggaacaattgatgatgctctcgttgtaaagctcatcaatcttgtttttgttcatcttggatggaatagattcagtggcaagatcccaaattctataggccagttgaagagactagaggagcttcacatgaataacaacaacttatctggagagttgccatcatccttgggcaattgcacaaatctagcaaccatcaacctcaggagcaacagtttcacgggagagcttgctaaggttaacttctccaacctgccaaatctgaaaacactagatttgtccacaaattacttcactggcataattccagaaagcatctattcatgcagtaatttgacttggttacggctatcttccaataggcttcacggccagcttacaaataaaataggaaatttgaagtccatcgccttcgtgtcactttcctacaacaatttcacaaatatcacaaatacaattcacatactcaagagcttaaggaacctcactaccttgctaatcgggggaaacttcatgcatgaagctatgccacaggatgaaacaattgatggttttgagaatattaagggtcttagcataaatgactgtacactttctggaaaaattccaaagtggttatcaaagctaaaaaaattgaaagttttagctttatacaacaataaactcagtggacctataccaacctggatcaatagcctaaacttccttaagtatgtagacatatccaataatagccttacaggagaaataccagcagcactaatggagatgccaatgctaaaatcggacaatgtttcagatagctcagtcccaaggggcttcccgttttcagtctatgcaggtgcatgtttgtgttttcagtaccatacggccactgctctccctaaaatgctgaatctaggtaacaacaaattcactggtgtgatccccaatgagatcggtgagttgaaagcactcgtttcactcaacttgagcttcaacaacctaaacagggagatcccacaatcgatcagcaacctcaagaatctgatggttctagacctgtcatacaatcatctgacaggtgcaatccctccagcactggtgaaccttcacttcctttctgaattcaatgtttcctacaatgatctaaaagggtctgtaccaattggaggccagttcagcacatttccaagttctagttttgctggaaacccagagctatgcagcccgatgcttttgcaccgttgcaatgtagcagaagcagatttgtctcccccaagctcaaaaatagattacatcaacaaggtcgtccctgtgattgctttttgtgtattctttggaataggagtgctatatgatcagatagttgtatctagatattttcggttaaaccgattacgatag
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| Protein seq | MPSSGLATAALLLLLLAVATSAMACVEQEKSSLLRFIAELSQDGGIAMSWQNGTDCCVWEGITCNEDGVVIEVHLASKGLEGQISPSLGELTSLSRLNLSYNSLSGGLPAELMSSGSIVVLDVSFNRLDGDLQELNPSVSDQPLQVLNISSNRFTGEFPSITWEKMRNLVAINASNNSFTGHIPSSFCSSSTSFAVLDLGYNQFSGNIPPGIGKCSALRLLKADDNNIKGSFPGDLFNATSLEYLSFANNGLQGTIDDALVVKLINLVFVHLGWNRFSGKIPNSIGQLKRLEELHMNNNNLSGELPSSLGNCTNLATINLRSNSFTGELAKVNFSNLPNLKTLDLSTNYFTGIIPESIYSCSNLTWLRLSSNRLHGQLTNKIGNLKSIAFVSLSYNNFTNITNTIHILKSLRNLTTLLIGGNFMHEAMPQDETIDGFENIKGLSINDCTLSGKIPKWLSKLKKLKVLALYNNKLSGPIPTWINSLNFLKYVDISNNSLTGEIPAALMEMPMLKSDNVSDSSVPRGFPFSVYAGACLCFQYHTATALPKMLNLGNNKFTGVIPNEIGELKALVSLNLSFNNLNREIPQSISNLKNLMVLDLSYNHLTGAIPPALVNLHFLSEFNVSYNDLKGSVPIGGQFSTFPSSSFAGNPELCSPMLLHRCNVAEADLSPPSSKIDYINKVVPVIAFCVFFGIGVLYDQIVVSRYFRLNRLR |
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| Function | Receptor-like protein 3 [UniProtKB/Swiss-Prot:Q9SHI4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0004370 | OsLima_02g0004370.01 | Chr02 | 3092921 | 3095062 | - | NAM | ||
| CDS seq | atgccttcctctggcctcgctactgctgcattattgctgctgcttctcgccgtggccacctccgccatggcttgcgtcgagcaggagaagagctccctcctccggttcattgctgagctgtcgcaagacggtggcatcgccatgtcgtggcagaatggcacggactgctgtgtgtgggaaggcatcacctgcaacgaagatggggttgtaattgaggtccatctagcctctaaaggcctcgaagggcaaatctcaccgtcactgggagagctcaccagcttgtcgcgcctcaacctgtcgtacaactccctatctggtggccttccagcagagttgatgtcctctggtagcatcgtcgtccttgatgtcagcttcaatcgcctcgacggggacctgcaagagttgaatccatcagtatctgaccagccactgcaggtactgaatatctcaagcaaccggtttacaggagagtttccatccatcacatgggagaaaatgaggaacctggtcgcaatcaatgcgagcaacaacagttttacagggcacataccttcctccttctgcagcagctcgacatcttttgctgttcttgatcttgggtacaaccagttcagtggcaacatcccccctggaataggtaaatgttctgcccttagactgctcaaggctgatgacaacaacatcaaagggtctttccctggtgatctcttcaatgccacatcattggagtacctctctttcgctaacaatggattgcaaggaacaattgatgatgctctcgttgtaaagctcatcaatcttgtttttgttcatcttggatggaatagattcagtggcaagatcccaaattctataggccagttgaagagactagaggagcttcacatgaataacaacaacttatctggagagttgccatcatccttgggcaattgcacaaatctagcaaccatcaacctcaggagcaacagtttcacgggagagcttgctaaggttaacttctccaacctgccaaatctgaaaacactagatttgtccacaaattacttcactggcataattccagaaagcatctattcatgcagtaatttgacttggttacggctatcttccaataggcttcacggccagcttacaaataaaataggaaatttgaagtccatcgccttcgtgtcactttcctacaacaatttcacaaatatcacaaatacaattcacatactcaagagcttaaggaacctcactaccttgctaatcgggggaaacttcatgcatgaagctatgccacaggatgaaacaattgatggttttgagaatattaagggtcttagcataaatgactgtacactttctggaaaaattccaaagtggttatcaaagctaaaaaaattgaaagttttagctttatacaacaataaactcagtggacctataccaacctggatcaatagcctaaacttccttaagtatgtagacatatccaataatagccttacaggagaaataccagcagcactaatggagatgccaatgctaaaatcggacaatgtttcagatagctcagtcccaaggggcttcccgttttcagtctatgcaggtgcatgtttgtgttttcagtaccatacggccactgctctccctaaaatgctgaatctaggtaacaacaaattcactggtgtgatccccaatgagatcggtgagttgaaagcactcgtttcactcaacttgagcttcaacaacctaaacagggagatcccacaatcgatcagcaacctcaagaatctgatggttctagacctgtcatacaatcatctgacaggtgcaatccctccagcactggtgaaccttcacttcctttctgaattcaatgtttcctacaatgatctaaaagggtctgtaccaattggaggccagttcagcacatttccaagttctagttttgctggaaacccagagctatgcagcccgatgcttttgcaccgttgcaatgtagcagaagcagatttgtctcccccaagctcaaaaatagattacatcaacaaggtcgtccctgtgattgctttttgtgtattctttggaataggagtgctatatgatcagatagttgtatctagatattttcggttaaaccgattacgatag
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| Protein seq | MPSSGLATAALLLLLLAVATSAMACVEQEKSSLLRFIAELSQDGGIAMSWQNGTDCCVWEGITCNEDGVVIEVHLASKGLEGQISPSLGELTSLSRLNLSYNSLSGGLPAELMSSGSIVVLDVSFNRLDGDLQELNPSVSDQPLQVLNISSNRFTGEFPSITWEKMRNLVAINASNNSFTGHIPSSFCSSSTSFAVLDLGYNQFSGNIPPGIGKCSALRLLKADDNNIKGSFPGDLFNATSLEYLSFANNGLQGTIDDALVVKLINLVFVHLGWNRFSGKIPNSIGQLKRLEELHMNNNNLSGELPSSLGNCTNLATINLRSNSFTGELAKVNFSNLPNLKTLDLSTNYFTGIIPESIYSCSNLTWLRLSSNRLHGQLTNKIGNLKSIAFVSLSYNNFTNITNTIHILKSLRNLTTLLIGGNFMHEAMPQDETIDGFENIKGLSINDCTLSGKIPKWLSKLKKLKVLALYNNKLSGPIPTWINSLNFLKYVDISNNSLTGEIPAALMEMPMLKSDNVSDSSVPRGFPFSVYAGACLCFQYHTATALPKMLNLGNNKFTGVIPNEIGELKALVSLNLSFNNLNREIPQSISNLKNLMVLDLSYNHLTGAIPPALVNLHFLSEFNVSYNDLKGSVPIGGQFSTFPSSSFAGNPELCSPMLLHRCNVAEADLSPPSSKIDYINKVVPVIAFCVFFGIGVLYDQIVVSRYFRLNRLR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.096520 | 0.141066 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0155900 | SBH | 1.346298 | 0.557559 | 0.263913 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06180 | SBH | 0.178056 | 0.515403 | 0.284927 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0155900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004310 | SBH | 0.053326 | 2.659473 | 0.663938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004260 | SBH | 0.069201 | 0.845967 | 0.776244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004360 | SBH | 0.038443 | 0.407024 | 0.900679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004210 | SBH | 0.099879 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004110 | SBH | 2.410689 | 8.209851 | 3.171613 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0052000 | SBH | 0.457674 | 0.8270825 | 1.2673805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0054100 | SBH | 1.8168465 | 1.4792655 | 2.897297 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004620 | SBH | 0.050025 | 0.093740 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004140 | SBH | 0.000000 | 0.691538 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004420 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | RBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004170 | SBH | 0.448533 | 0.000000 | 0.000000 |
