Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0018710 | OGI:02001240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:19765088-19767253 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagccaaatcacatcctttgtgcaaacaaagccagcagttgccgcatgaatttctttcaccttgcgcttgtgctactgctgctgagcttcatctgtgctcccgtcggttcatgcattgagcaggagaggctaaccctcctccggttcctcgcggagctgtcaccgccacatgataatggccagctcgctgcgtcatggaggaataggaccgattgctgtacctgggaagggatcatctgtgatgtggatggtgcagtaaccgagatcttgctggcctcaagaggccttgaagggcgcatctcgtcatccctgagcgagctcaccagcttgtcgcggctcaacctgtcatacaactcactctccggtgggcttccgccagagctgatattctctggcagcatcgttgtcctcgatgtcagcttcaaccgcctcggcggggaactacaagaggtagactcatcatcatctgattggccactccaggtactgaatatctcaagtaatctgtttactggagcatttccatccaccacatgggagaaaatgagcaacctagtagcgatcaatgcaagcaacaacagcttcactgggcacataccttcctctttctgcatcagctcactatcctttgctgctcttgacctttgctacaaccaattcagtggcgaaatccccgctgggataggtaaatgctctgcacttagaatgctcaaagctggccacaacaacattagtggggccctcccggatgatctcttccatgccacatcattggagtacctctcttttcctaacaatggtttgcaaggaacaattaagcttgtgataaagctcagtaatctagtttttcttgatcttggggggaacagtttcagtggcaaggtcccagaatctataggcgagctcaagaaactggaggagcttcgcatggaccataactacatatctggggagctgccatcaaccttggccaattgcacaaatctagcagccatcgtcctcgtgagcaacaaattcacaggagaccttgctaaggttaacttctccaacctaccaaatctgaaaactttagatctttgcacgaattacttcaccggcacaattccagcaagtatctactcatgcagtaatttaacttggttgcggttatctttcaataagcttcacggtcagttgccagaggagacagaaaagttgaaatcccttacctttgtatctctttcgtacaactactttaccaatatcacaggtgcacttcatatactcaagagcttaaggaacctcactaccttgctaattgggggcaatttcatgcatgaaactattccacaggatgaaacaattcatggtcttgagaatcttcaggttcttggcataaatgattgtgcactgactggaaaaatacctagttggctctcaaagctaaaaaaattggaacttctacttttatacaacaatcaacttagtggaccaataccaacctggatcaagagcctaaactaccttaagtatgtagacttatccaataatagccttacaggggaaataccaacatcactaacagagatgccaatgctaagatcagacaagattgcggatcactcagacccaagactctttcggatgccagtttttgtggctccatctctcgagtaccatacggctaatgcattccctaaaatgttgaatctaggtaacaacaaattcagtggtgtgatccccatggagattggtcagttgaaagcgctcctctcactcaacttgagcttcaacaacttacatggggagatcccgcaatcggccagcaacctcaagaatctgatggtgctagacctgtcttccaaccatctgacaggtgcaatcccttcgtcactggcgaacttgcactttctttctaacttcaacatttcttacaatgaccttgaagggcctgtaccaattacaggccagttcagcacatttcctacttccagttttgctgggaacccgaagctatgcagccctatgcttttgcaccgctgcaattcagcaggagcagctccagtctccacaatccccacaaagcagtacattgacaaggttgtcttcgcaattgcatttggcatgttctttggagtaggagtgctatatgatcaaattgttgtgtccagattctttggctaa
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| CDS seq | atgaagccaaatcacatcctttgtgcaaacaaagccagcagttgccgcatgaatttctttcaccttgcgcttgtgctactgctgctgagcttcatctgtgctcccgtcggttcatgcattgagcaggagaggctaaccctcctccggttcctcgcggagctgtcaccgccacatgataatggccagctcgctgcgtcatggaggaataggaccgattgctgtacctgggaagggatcatctgtgatgtggatggtgcagtaaccgagatcttgctggcctcaagaggccttgaagggcgcatctcgtcatccctgagcgagctcaccagcttgtcgcggctcaacctgtcatacaactcactctccggtgggcttccgccagagctgatattctctggcagcatcgttgtcctcgatgtcagcttcaaccgcctcggcggggaactacaagaggtagactcatcatcatctgattggccactccaggtactgaatatctcaagtaatctgtttactggagcatttccatccaccacatgggagaaaatgagcaacctagtagcgatcaatgcaagcaacaacagcttcactgggcacataccttcctctttctgcatcagctcactatcctttgctgctcttgacctttgctacaaccaattcagtggcgaaatccccgctgggataggtaaatgctctgcacttagaatgctcaaagctggccacaacaacattagtggggccctcccggatgatctcttccatgccacatcattggagtacctctcttttcctaacaatggtttgcaaggaacaattaagcttgtgataaagctcagtaatctagtttttcttgatcttggggggaacagtttcagtggcaaggtcccagaatctataggcgagctcaagaaactggaggagcttcgcatggaccataactacatatctggggagctgccatcaaccttggccaattgcacaaatctagcagccatcgtcctcgtgagcaacaaattcacaggagaccttgctaaggttaacttctccaacctaccaaatctgaaaactttagatctttgcacgaattacttcaccggcacaattccagcaagtaacaacaaattcagtggtgtgatccccatggagattggtcagttgaaagcgctcctctcactcaacttgagcttcaacaacttacatggggagatcccgcaatcggccagcaacctcaagaatctgatggtgctagacctgtcttccaaccatctgacaggtgcaatcccttcgtcactggcgaacttgcactttctttctaacttcaacatttcttacaatgaccttgaagggcctgtaccaattacaggccagttcagcacatttcctacttccagttttgctgggaacccgaagctatgcagccctatgcttttgcaccgctgcaattcagcaggagcagctccagtctccacaatccccacaaagcagtacattgacaaggttgtcttcgcaattgcatttggcatgttctttggagtaggagtgctatatgatcaaattgttgtgtccagattctttggctaa
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| Protein seq | MKPNHILCANKASSCRMNFFHLALVLLLLSFICAPVGSCIEQERLTLLRFLAELSPPHDNGQLAASWRNRTDCCTWEGIICDVDGAVTEILLASRGLEGRISSSLSELTSLSRLNLSYNSLSGGLPPELIFSGSIVVLDVSFNRLGGELQEVDSSSSDWPLQVLNISSNLFTGAFPSTTWEKMSNLVAINASNNSFTGHIPSSFCISSLSFAALDLCYNQFSGEIPAGIGKCSALRMLKAGHNNISGALPDDLFHATSLEYLSFPNNGLQGTIKLVIKLSNLVFLDLGGNSFSGKVPESIGELKKLEELRMDHNYISGELPSTLANCTNLAAIVLVSNKFTGDLAKVNFSNLPNLKTLDLCTNYFTGTIPASNNKFSGVIPMEIGQLKALLSLNLSFNNLHGEIPQSASNLKNLMVLDLSSNHLTGAIPSSLANLHFLSNFNISYNDLEGPVPITGQFSTFPTSSFAGNPKLCSPMLLHRCNSAGAAPVSTIPTKQYIDKVVFAIAFGMFFGVGVLYDQIVVSRFFG |
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| Function | Tyrosine-sulfated glycopeptide receptor 1 [UniProtKB/Swiss-Prot:Q9C7S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0018710 | OsLiXu_02g0018710.01 | Chr02 | 19765088 | 19767253 | + | NAM | ||
| CDS seq | atgaagccaaatcacatcctttgtgcaaacaaagccagcagttgccgcatgaatttctttcaccttgcgcttgtgctactgctgctgagcttcatctgtgctcccgtcggttcatgcattgagcaggagaggctaaccctcctccggttcctcgcggagctgtcaccgccacatgataatggccagctcgctgcgtcatggaggaataggaccgattgctgtacctgggaagggatcatctgtgatgtggatggtgcagtaaccgagatcttgctggcctcaagaggccttgaagggcgcatctcgtcatccctgagcgagctcaccagcttgtcgcggctcaacctgtcatacaactcactctccggtgggcttccgccagagctgatattctctggcagcatcgttgtcctcgatgtcagcttcaaccgcctcggcggggaactacaagaggtagactcatcatcatctgattggccactccaggtactgaatatctcaagtaatctgtttactggagcatttccatccaccacatgggagaaaatgagcaacctagtagcgatcaatgcaagcaacaacagcttcactgggcacataccttcctctttctgcatcagctcactatcctttgctgctcttgacctttgctacaaccaattcagtggcgaaatccccgctgggataggtaaatgctctgcacttagaatgctcaaagctggccacaacaacattagtggggccctcccggatgatctcttccatgccacatcattggagtacctctcttttcctaacaatggtttgcaaggaacaattaagcttgtgataaagctcagtaatctagtttttcttgatcttggggggaacagtttcagtggcaaggtcccagaatctataggcgagctcaagaaactggaggagcttcgcatggaccataactacatatctggggagctgccatcaaccttggccaattgcacaaatctagcagccatcgtcctcgtgagcaacaaattcacaggagaccttgctaaggttaacttctccaacctaccaaatctgaaaactttagatctttgcacgaattacttcaccggcacaattccagcaagtaacaacaaattcagtggtgtgatccccatggagattggtcagttgaaagcgctcctctcactcaacttgagcttcaacaacttacatggggagatcccgcaatcggccagcaacctcaagaatctgatggtgctagacctgtcttccaaccatctgacaggtgcaatcccttcgtcactggcgaacttgcactttctttctaacttcaacatttcttacaatgaccttgaagggcctgtaccaattacaggccagttcagcacatttcctacttccagttttgctgggaacccgaagctatgcagccctatgcttttgcaccgctgcaattcagcaggagcagctccagtctccacaatccccacaaagcagtacattgacaaggttgtcttcgcaattgcatttggcatgttctttggagtaggagtgctatatgatcaaattgttgtgtccagattctttggctaa
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| Protein seq | MKPNHILCANKASSCRMNFFHLALVLLLLSFICAPVGSCIEQERLTLLRFLAELSPPHDNGQLAASWRNRTDCCTWEGIICDVDGAVTEILLASRGLEGRISSSLSELTSLSRLNLSYNSLSGGLPPELIFSGSIVVLDVSFNRLGGELQEVDSSSSDWPLQVLNISSNLFTGAFPSTTWEKMSNLVAINASNNSFTGHIPSSFCISSLSFAALDLCYNQFSGEIPAGIGKCSALRMLKAGHNNISGALPDDLFHATSLEYLSFPNNGLQGTIKLVIKLSNLVFLDLGGNSFSGKVPESIGELKKLEELRMDHNYISGELPSTLANCTNLAAIVLVSNKFTGDLAKVNFSNLPNLKTLDLCTNYFTGTIPASNNKFSGVIPMEIGQLKALLSLNLSFNNLHGEIPQSASNLKNLMVLDLSSNHLTGAIPSSLANLHFLSNFNISYNDLEGPVPITGQFSTFPTSSFAGNPKLCSPMLLHRCNSAGAAPVSTIPTKQYIDKVVFAIAFGMFFGVGVLYDQIVVSRFFG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.419383 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0515125 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g42370 | SBH | 0.435753 | 0.414834 | 0.511760 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0515125 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004120 | SBH | 0.124114 | 14.442955 | 1.259517 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | SBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004170 | SBH | 0.137843 | 1.557139 | 0.736899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004250 | SBH | 0.061636 | 0.022630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0018590 | SBH | 0.660883 | 0.000000 | 2.376410 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0309300 | RBH | 2.843263 | 3.5386125 | 22.459052 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0328200 | RBH | 12.632153 | 7.188125 | 19.8525065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004550 | SBH | 0.022579 | 0.127643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0018560 | RBH | 0.236361 | 4.223491 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018490 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004260 | SBH | 0.000000 | 0.353235 | 0.384476 |
