Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0004800 | OGI:11010520 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:3604819-3608901 | ||||||||
| Gene Symbol | RLCK313, OsRLCK313 | ||||||||||
| DNA seq | ctgtccaaacccaaacaagcctatccggttggttatcaaccaacaatgtggcggagacaattggccagaaccactcatgatggccgctcatttactcaatggtgtacaaaactacttgaccgaaagacgcgcacaaagctagctagtttcctctgagatatgaatctttgattccgtgtagcttggcagcaacctcctgcatgctgatgcgttcaatcggtgttgtcttggtgcagcagagtccaatatttagcacactgcgcaggcagtgtatgcctttctccttgactgccattggtgtttcttggcaaaggtccagctcgtgttgcagctggggatcaacaatctctagtatcctgtcagggaagttcatctctacatgctttgcaatgctcaatccatccataaacatgtcgtttgttggccttctccgaataaataattccaagagaacaactccaaagctgaatacatctgaggtagttgaaacttgaccgccctctgagcattctagagtttcatccagcaagagttaagttcacacaaatcagcatgtcagataataaaataaaacttgcagcggtgtaatacaagaaaaacaaactaatacctgatgcgatatatccaatggttccctttattgctagggaataagttgagcttgaatcccctagagatggtgttgaagaaccggtcttgaatcttgcaagtccaaagtctgcaacatgagcaatcATatcatcatcaagaagtatgttgctaggcttcagatcacagtgaacaatagttccttggttgttatggtgcaggtactccaacgcatcagatacatcgaccacaatgcttatcctctgagccaatgtaatgtggttcagatatgaagtgttttcatcattttgtgctgagtgtagtaatgcatgcaagtcacctcgtcccataaactcataaaccaaggccttaaaatcatttccttttgaatcagtacttgcacatgcagttaggataggaactaggttgcgatgccgaacatttctcaaagtattacattctgcgatgaagctcttttgtgctccccttgtctctaggttgaatactttgacagcaaccatattatcatcttcgaataattttccttgatatacataactgtatcttcctttgcctatcaaattggatgttgagaacccccctgttgctctgaaaagcatattgtatgaaacttggggcaaatgcctagcaaacgagggcaaaaataaagattttctgttctgttttcttctccacataagcacagtaaatttgaccatagaaattgacacaatgctggctattgggatcactactttcagtaTtattgatttcttgtgcttagatgaaaccaaagccatgataggacatgcttgtaggtgtaactcaggtggcccaccacaaaggccctgatttccatcaatcctgaaagctgttgcattcttgaaaattcctttcgtgggaatctcgcccttaagatggttgaatgacaaatctagttgctcaagaaattgtaaattgccaatagaacctggtattgaaccagttaaattattgtttcagtcacagtctagtccgctacacttttctactcaacatgtctctctttggcctagcccgcaattggagctataagcccagctcgcacatactgttgtgttcaagctctagaaagtagtcccatgcaatccccccatcaaattcggccgaatctttcacaattttttaaaattgattgagggcttttgatgcactcgaccactctttttgtttttcccaaaattgaagtgaatcagtaacactcgggataaaaacatccagggaagctccagctgccggccatcatcggcaactgttaaataggggattgaatttggtgaattaaagcagtattgaaagggaaaatcacgaggaaaacaaagatggaggagtgaggaatcgatttttacaatcaattaaaggagtaaacgtacggggaggtacatgatgttgcggtggctgaggcgcgctgcgcacgcggatcagaccggaggagatcgaacaaaaaccgggcaacgaaaaaaaagttccacgtgaaaaaaaactgcgaaaaaactagacggccattgaaaaaaaagggcgacgaaataaaaaaaaaacgagcggagaCGgaccaaaccgtaactcacggtattatgaatatctaagaagtaatttaatcaaatctaaaagtaatttacATatatgataaaattaatttaaatatAtaataaaattaattatatatatgttttttatcagaacatgaccatgtaacatcttgctataaaaaattatttacaacgaatataatgtataatccgattgttgatcggataagttatttgaaagaaattttatttgaagcttacctatgaggaatcttttatttatactgttgcatgcttgcacactttgacgtgagaaaaagatatattgctacattttaccatttattggtatAatagttggttttgATTaattagtgcacatgtactcggagaaaactacaCGTcgggcgctcgatccgggggtggggaaatcgggcagcatgcaaaactaatttaaactgttttttctcttaaattatttatccaaattatgatccgattacaccattaaattcgttgcaattaaatctttgaaacaagatcacacatggatgtatttcgacaaaatttttttagcttattattgaattatttttaaatgttgcacgttgttccaccaagtatatcggaattgtttcactaagtagatcgaaaatgtttcaatcgtttaaatcggtcgttgtttcaCCtatataaaaacaatgttttagcaaatagcgaaagaatgtttcagatcactgcaacatttgatccatacatagtgaaacattataagtacactaggtgaaacattttttgtggaacaaaaattgaaatgaattcccttaataaagggtttccataatatgtaggtgatttgttgcaaaagaatgtttcaattcactgcaacattagatctatacatagtgaaacattgtgagtacactatgtgaaacatttttggtggaacaaaaaatgaaacggatcacctagttggacaactgaataataattttccccctaagcttcaagtgctgactcttgcATataataatcttactggaactatcccttcttcctttgccaatatcacaggacttagaaaacttgatttcacagctaacaatatcaagggaaacatcccaaatgagttttcaaacttcctcatgatggagattcTtcttttgggtggaaatatgttgacaggtaggttttcacaagccatcttgaatctttctactctcactaatcttcaccttagttttaatcatctaagtggggagctaccatccaatttcctttactctctacccgatctacaagtacttgcattggactacaatttttttcaaggccatatccccagctcattgggaaacgactccaacatacgtgtactggacatatcaagtaataatttcactggagttgtaccaagttccattggcaaactaagcaaactgtattggttaaatcttaatccaatcaactccaagcacataaaagggaagattgggagtttatgaacagcttagccaactgcactaggctacaaagtttctcgatggcttataaccgtctagaaggccatctaccgagttcgttaagcaacttttccgctcatctccaacgacttcatttaggaggaaatgcaatatcagggtcttttccctctggcatagaacacctctcaaacttgattgctttatcagtaggaactaatgactttactggtacccttccagaatggcttggaaatcttaaacagttgcaaatgttaagtttatatgacaactatttcacagggtttattccatcatccctttcgaatctgtctcaactggtagctctcacactacaatttaacaagctggatgggcagataccaagcttaggaaaccagctgcaaatgcttcaaatattcaatgttttgtacaataatcttcat
More
|
||||||||||
| CDS seq | atgaagattattgtacaaaacattgaatatttgaagcatttgcagctgatttccaagccattctggaagggtaccagtaaaggcgagattcccacgaaaggaattttcaagaatgcaacagctttcaggattgatggaaatcagggcctttgtggtgggccacctgagttacacctacaagcatgtcctatcatggctttggtttcatctaagcacaagaaatcaataAtactgaaagtagtgatcccaatagccagcattgtgtcaatttctatggtcaaatttactgtgcttatgtggagaagaaaacagaacagaaaatctttatttttgccctcgtttgctaggcatttgccccaagtttcatacaatatgcttttcagagcaacaggggggttctcaacatccaatttgataggcaaaggaagatacagttatgtatatcaaggaaaattattcgaagatgataatatggttgctgtcaaagtattcaacctagagacaaggggagcacaaaagagcttcatcgcagaatgtaatactttgagaaatgttcggcatcgcaacctagttcctatcctaactgcatgtgcaagtactgattcaaaaggaaatgattttaaggccttggtttatgagtttatgggacgaggtgacttgcatgcattactacactcagcacaaaatgatgaaaacacttcatatctgaaccacattacattggctcagaggataagcattgtggtcgatgtatctgatgcgttggagtacctgcaccataacaaccaaggaactattgttcactgtgatctgaagcctagcaacatacttcttgatgatgatATgattgctcatgttgcagactttggacttgcaagattcaagaccggttcttcaacaccatctctaggggattcaagctcaacttattccctagcaataaagggaaccattggatatatcgcatcagaatgctcagagggcggtcaagtttcaactacctcagatgtattcagctttggagttgttctcttggaattatttattcggagaaggccaacaaacgacatgtttatggatggattgagcattgcaaagcatgtagagatgaacttccctgacaggatactagagattgttgatccccagctgcaacacgagctggacctttgccaagaaacaccaatggcagtcaaggagaaaggcatacactgcctgcgcagtgtgctaaatattggactctgctgcaccaagacaacaccgattgaacgcatcagcatgcaggaggttgctgccaagctacacggaatcaaagattcatatctcagaggaaactag
More
|
||||||||||
| Protein seq | MKIIVQNIEYLKHLQLISKPFWKGTSKGEIPTKGIFKNATAFRIDGNQGLCGGPPELHLQACPIMALVSSKHKKSIILKVVIPIASIVSISMVKFTVLMWRRKQNRKSLFLPSFARHLPQVSYNMLFRATGGFSTSNLIGKGRYSYVYQGKLFEDDNMVAVKVFNLETRGAQKSFIAECNTLRNVRHRNLVPILTACASTDSKGNDFKALVYEFMGRGDLHALLHSAQNDENTSYLNHITLAQRISIVVDVSDALEYLHHNNQGTIVHCDLKPSNILLDDDMIAHVADFGLARFKTGSSTPSLGDSSSTYSLAIKGTIGYIASECSEGGQVSTTSDVFSFGVVLLELFIRRRPTNDMFMDGLSIAKHVEMNFPDRILEIVDPQLQHELDLCQETPMAVKEKGIHCLRSVLNIGLCCTKTTPIERISMQEVAAKLHGIKDSYLRGN |
||||||||||
| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0004800 | OsLaMu_11g0004800.01 | Chr11 | 3604819 | 3608901 | - | NAM | ||
| CDS seq | atgaagattattgtacaaaacattgaatatttgaagcatttgcagctgatttccaagccattctggaagggtaccagtaaaggcgagattcccacgaaaggaattttcaagaatgcaacagctttcaggattgatggaaatcagggcctttgtggtgggccacctgagttacacctacaagcatgtcctatcatggctttggtttcatctaagcacaagaaatcaataAtactgaaagtagtgatcccaatagccagcattgtgtcaatttctatggtcaaatttactgtgcttatgtggagaagaaaacagaacagaaaatctttatttttgccctcgtttgctaggcatttgccccaagtttcatacaatatgcttttcagagcaacaggggggttctcaacatccaatttgataggcaaaggaagatacagttatgtatatcaaggaaaattattcgaagatgataatatggttgctgtcaaagtattcaacctagagacaaggggagcacaaaagagcttcatcgcagaatgtaatactttgagaaatgttcggcatcgcaacctagttcctatcctaactgcatgtgcaagtactgattcaaaaggaaatgattttaaggccttggtttatgagtttatgggacgaggtgacttgcatgcattactacactcagcacaaaatgatgaaaacacttcatatctgaaccacattacattggctcagaggataagcattgtggtcgatgtatctgatgcgttggagtacctgcaccataacaaccaaggaactattgttcactgtgatctgaagcctagcaacatacttcttgatgatgatATgattgctcatgttgcagactttggacttgcaagattcaagaccggttcttcaacaccatctctaggggattcaagctcaacttattccctagcaataaagggaaccattggatatatcgcatcagaatgctcagagggcggtcaagtttcaactacctcagatgtattcagctttggagttgttctcttggaattatttattcggagaaggccaacaaacgacatgtttatggatggattgagcattgcaaagcatgtagagatgaacttccctgacaggatactagagattgttgatccccagctgcaacacgagctggacctttgccaagaaacaccaatggcagtcaaggagaaaggcatacactgcctgcgcagtgtgctaaatattggactctgctgcaccaagacaacaccgattgaacgcatcagcatgcaggaggttgctgccaagctacacggaatcaaagattcatatctcagaggaaactag
More
|
|||||||
| Protein seq | MKIIVQNIEYLKHLQLISKPFWKGTSKGEIPTKGIFKNATAFRIDGNQGLCGGPPELHLQACPIMALVSSKHKKSIILKVVIPIASIVSISMVKFTVLMWRRKQNRKSLFLPSFARHLPQVSYNMLFRATGGFSTSNLIGKGRYSYVYQGKLFEDDNMVAVKVFNLETRGAQKSFIAECNTLRNVRHRNLVPILTACASTDSKGNDFKALVYEFMGRGDLHALLHSAQNDENTSYLNHITLAQRISIVVDVSDALEYLHHNNQGTIVHCDLKPSNILLDDDMIAHVADFGLARFKTGSSTPSLGDSSSTYSLAIKGTIGYIASECSEGGQVSTTSDVFSFGVVLLELFIRRRPTNDMFMDGLSIAKHVEMNFPDRILEIVDPQLQHELDLCQETPMAVKEKGIHCLRSVLNIGLCCTKTTPIERISMQEVAAKLHGIKDSYLRGN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0172350 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07130 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0172350 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004890 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004930 | SBH | 0.145897 | 1.520357 | 0.670409 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004900 | SBH | 0.055700 | 1.280922 | 0.881881 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004780 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004670 | SBH | 1.364498 | 1.938285 | 3.784618 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0061400 | SBH | 4.575236 | 3.059625 | 1.525088 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004810 | SBH | 0.297846 | 0.021683 | 0.170285 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0061900 | SBH | 4.7170635 | 2.200798 | 1.7117715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004690 | SBH | 0.062289 | 0.109511 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004870 | RBH | 0.120554 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004870 | RBH | 2.079502 | 1.579314 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004780 | SBH | 0.152264 | 0.0 | 0.102352 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004850 | SBH | 0.056974 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004890 | SBH | 0.838538 | 0.000000 | 0.368926 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004810 | RBH | 4.826402 | 0.871399 | 1.661659 |
