Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0157100 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:3124459-3126612 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGATCTAACAGCACACCAAGTGCAAAGAACAGGCCTACTGTGATACCAAAGATAACCTTGTCACTGAATTCACCTGTGGATAGAGTAGAGGCAGGCGCAGGAACTGCTTTTGCTGAACTACAACGGTGACTGAGCATAGGACCACATAGCTTTGGATTACCAATGAAGCAATCTGTGAATGTGCTAAGCTGGCCTTCAGTTGGGATAGGCCCTTCTAGGTCATTGTAAGAAATGTTGAATCTGGTTAGGAAGTTTAGATTTTTCAGTGCTGCTGGGATTGTACCAGATAGTTTGTTGCTTGATAAATCCAGTGTTAGCAGATTTGTGAGGTTGCAGATCGACTGGGGGATATCTCCATATAATTTGTTAGCGCTCAAATTGAGTTCAAGGAGCCCTTTCAACTGACCAATCTCTGGAGGGATCAAACCAGTGAATTTATTGCTGCCTAGATCCAGCATTATGGGGAAAGCATTGGCCTTGCGGTATTGAAGTAGTGATGTAAGACTATATATGGGTAGTTGAAATGCTCTAGGGTGCAATTGGACTTGGACTGCAGACTTCTCTGACCTAAGCATTGGCATCTGTACTAAGGCTGTTGGAATTTCTCCCGTCAGATTGTTGTTTGATATGTCTAGATAGAAGAGGAAGTTTAGGCTGCTGATCCAGTCAGGTATTGGTCCAGTTAATTGATTTCTATTTAATATTAGCATCTCCAGACTCGAGAGTTTTGATAACCATCGAGGTATTTTTCCATATATAAGGAGCAAGCAATTTGGGAAAGAACCTGAAGATTGTCAAATCCATCAATGTTATCATCGTCCAGTATTCTCTCATTCATGAAGTTTCGGCCAATAAGAAGGGTGGTGAGGCTGCTGGAGCTCCTTAATATCTGTAGTGCATTTGTTATGTTTGTAAGATTGTTGTAACTGAGTGACAGGAAGGAAAGGGATTTCAGATTACCTAGTCCCTTTGATAACTGGCCTTGAAACTTATTGGAAGATAGCCGCAGGGCAGTTAGGTTACTACATGAGTATATTGTTTCTGGAATCTTACCACTGAAGTTGTTCCACAAAAGATCTAAAGCTTTTAGATTGGGTAGGTTGGAGAAATTGACATTGACGAGCTCCCCACTGAAATTGTTGCTCCTGAGGTTGATGGTTATCAGACTTGTGCAGTTGCTTAAGGTTGATGGTATGCCCCCATACATTTTGTTGTTGTTCAAAAGGAGTTCTTCCAATCTGTTGAGCTGGCCTATAGACTCTGGAATGTTACCACTGAAGTTGTTCTCTCCGAGGTCAAGAGTAGCCAGCTTCCCTAGTTTGATAACATTTTCCCCTTCAAGTGTTCCATGTAAATTGTCGTTTGGAAAAGAGAGGCACTCTATTGAAGTACTCAGCATTGAAGAGTTCGTCTGGAATAGTCCCACAAAGGTTGTTGTGGCCAACCTTGAGGACTCTGAGCCTGGAGCAATTTCCAAGTCCAGGGGGAATGCTCCCACTGAATTGGTTGTAACTGAGTTCAAGCACAGCTAAGGATGGCAAGTTGGTGCAGAAATTAGTTGGTATATGCCCACTAAATCTATTGTTGCTAGCACTGAGCGTGATGAGATGCGCCATTCCGTCTAACGACGGCAACTCCGTGGAAAACTTGTTGCTCGAGATGTTGAGCACCTGCAGAGGCAACTTTAGACCAGTGGTTAGTGGTGGCGACAGTGGTAGAATTCTGCCGAGGCTGTTGAAGCTGACGTCAAGGATGATGATGCTGCCTGATGACATTACTTCTGATGGTAATCCGCCGGATAGTGAGTTGTGCGACAGGTTCAGACGCAGCAAACCTGGCAGTCTGCCAAGAGCAGGTGATATGCTGCCTTCCAGCCTCTTGGAGGCCAACAAGACGTCTGTGACCATGGCGTCCTTGCTGACCATGCTGCTGCAGGTGATGCCTTCCCATGAGCAGCAGTCTGTGCCCAGCCGCCATGACGCGGCGAGGCCACCGTCCTGCGAGAGCCCTGCTAGGAACTGGAGGAGGCAGTTGTTCTCACGCTCTGTGCAGCAGCTGGTGGAAGATGCAGAGGAAAGCATCAGCACAAGAACGAGGCAGAGAATAGACATGGGTAATTTGTTTTTATTGCTGCTGCTACTGGTTGTGGTGGTG
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| CDS seq | ATGTCTATTCTCTGCCTCGTTCTTGTGCTGATGCTTTCCTCTGCATCTTCCACCAGCTGCTGCACAGAGCGTGAGAACAACTGCCTCCTCCAGTTCCTAGCAGGGCTCTCGCAGGACGGTGGCCTCGCCGCGTCATGGCGGCTGGGCACAGACTGCTGCTCATGGGAAGGCATCACCTGCAGCAGCATGGTCAGCAAGGACGCCATGGTCACAGACGTCTTGTTGGCCTCCAAGAGGCTGGAAGGCAGCATATCACCTGCTCTTGGCAGACTGCCAGGTTTGCTGCGTCTGAACCTGTCGCACAACTCACTATCCGGCGGATTACCATCAGAAGTAATGTCATCAGGCAGCATCATCATCCTTGACGTCAGCTTCAACAGCCTCGGCAGAATTCTACCACTGTCGCCACCACTAACCACTGGTCTAAAGTTGCCTCTGCAGGTGCTCAACATCTCGAGCAACAAGTTTTCCACGGAGTTGCCGTCGTTAGACGGAATGGCGCATCTCATCACGCTCAGTGCTAGCAACAATAGATTTAGTGGGCATATACCAACTAATTTCTGCACCAACTTGCCATCCTTAGCTGTGCTTGAACTCAGTTACAACCAATTCAGTGGGAGCATTCCCCCTGGACTTGGAAATTGCTCCAGGCTCAGAGTCCTCAAGGTTGGCCACAACAACCTTTGTGGGACTATTCCAGACGAACTCTTCAATGCTGAGTACTTCAATAGAGTGCCTCTCTTTTCCAAACGACAATTTACATGGAACACTTGA
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| Protein seq | MSILCLVLVLMLSSASSTSCCTERENNCLLQFLAGLSQDGGLAASWRLGTDCCSWEGITCSSMVSKDAMVTDVLLASKRLEGSISPALGRLPGLLRLNLSHNSLSGGLPSEVMSSGSIIILDVSFNSLGRILPLSPPLTTGLKLPLQVLNISSNKFSTELPSLDGMAHLITLSASNNRFSGHIPTNFCTNLPSLAVLELSYNQFSGSIPPGLGNCSRLRVLKVGHNNLCGTIPDELFNAEYFNRVPLFSKRQFTWNT |
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| Function | Receptor-like protein 3 [UniProtKB/Swiss-Prot:Q9SHI4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0157100 | OsNip_02t0157100-00 | Chr02 | 3124459 | 3126612 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCTATTCTCTGCCTCGTTCTTGTGCTGATGCTTTCCTCTGCATCTTCCACCAGCTGCTGCACAGAGCGTGAGAACAACTGCCTCCTCCAGTTCCTAGCAGGGCTCTCGCAGGACGGTGGCCTCGCCGCGTCATGGCGGCTGGGCACAGACTGCTGCTCATGGGAAGGCATCACCTGCAGCAGCATGGTCAGCAAGGACGCCATGGTCACAGACGTCTTGTTGGCCTCCAAGAGGCTGGAAGGCAGCATATCACCTGCTCTTGGCAGACTGCCAGGTTTGCTGCGTCTGAACCTGTCGCACAACTCACTATCCGGCGGATTACCATCAGAAGTAATGTCATCAGGCAGCATCATCATCCTTGACGTCAGCTTCAACAGCCTCGGCAGAATTCTACCACTGTCGCCACCACTAACCACTGGTCTAAAGTTGCCTCTGCAGGTGCTCAACATCTCGAGCAACAAGTTTTCCACGGAGTTGCCGTCGTTAGACGGAATGGCGCATCTCATCACGCTCAGTGCTAGCAACAATAGATTTAGTGGGCATATACCAACTAATTTCTGCACCAACTTGCCATCCTTAGCTGTGCTTGAACTCAGTTACAACCAATTCAGTGGGAGCATTCCCCCTGGACTTGGAAATTGCTCCAGGCTCAGAGTCCTCAAGGTTGGCCACAACAACCTTTGTGGGACTATTCCAGACGAACTCTTCAATGCTGAGTACTTCAATAGAGTGCCTCTCTTTTCCAAACGACAATTTACATGGAACACTTGA
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| Protein seq | MSILCLVLVLMLSSASSTSCCTERENNCLLQFLAGLSQDGGLAASWRLGTDCCSWEGITCSSMVSKDAMVTDVLLASKRLEGSISPALGRLPGLLRLNLSHNSLSGGLPSEVMSSGSIIILDVSFNSLGRILPLSPPLTTGLKLPLQVLNISSNKFSTELPSLDGMAHLITLSASNNRFSGHIPTNFCTNLPSLAVLELSYNQFSGSIPPGLGNCSRLRVLKVGHNNLCGTIPDELFNAEYFNRVPLFSKRQFTWNT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.074530 | 0.000000 | 0.411211 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0156800 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06250 | RBH | 0.040892 | 0.000000 | 0.125143 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0157100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004310 | SBH | 0.053326 | 2.659473 | 0.663938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | SBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004360 | RBH | 0.038443 | 0.407024 | 0.900679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004020 | SBH | 0.031011 | 0.040793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004310 | RBH | 0.270115 | 0.770784 | 4.480157 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0050200 | SBH | 0.852885 | 2.079683 | 1.239989 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0054800 | RBH | 0.5707365 | 1.043263 | 0.1931665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004220 | SBH | 0.034492 | 0.108827 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004210 | RBH | 0.000000 | 0.847441 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004490 | RBH | 0.000000 | 0.000000 | 0.033774 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004060 | SBH | 0.292437 | 2.052631 | 0.572981 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004010 | SBH | 0.630622 | 3.130005 | 0.941510 |
