Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0001900 | OGI:07004740 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:1584931-1586949 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacctcccttcggagaggccagagatggtgccatcgctcaccactgattggcaatatgcaacgggtgagtccacctgacggttctgcaccatgtccattggcgccaactcgggaaatggcaagtcatggttaagatactgcatgacatgccacatgcttggccttgcagcaggtgattggtgtgagcaaagcaatcctagtttcaaagctaggcatgcttcatcagcatcatactcattttggagctttggatccattgcctcaagaagtgatccctcgttccaacaatcaatcacccagtctaccaacaagagcttgtcactattcatcttatgctcaatgggtcttcttccacaagtaacctcaagaacaaatatgccaaaggcgaagacatccgtgaggggtgaagccttacctcttcgtaccagctcaggggcaagatatcctatagtgccaaccaggtgtgtggtttgcatgtcagtaccatggtcatataatcttgcaaggccaaaatcacctaggcgtgcattcatttctgcatcaagaagcacattgctagctttgacgtctcgatggatgacaactttctcccactccccatgaaggtaaaataaaccagatgcaacacctttgattattctaaaacgttgaatccaatctaaagtaatacagttactacgactatacaaatatttatcaaggctaccgtttggcatataatcatagaccaaaagaagttcacctttgcgtctgcaatatccaagtaactgcacaatattccgatgacgaagacggccgatgctaacaatctcagcgacaaattctcttataccttgccttgactcatgagacaccctcttcacagcaatctgcaacttagatttggaaagaagacccttgtacacacttccaaaccctcctctgcccaagagatgcctattcttaaatccttgggtggcaaaatataggtccttaaatgagaacctatgtggtccaaactcaatttcccaatcttctcgcagctcggcatacttcatccgccttcgcatgaaaagatagacagccaaacccactataaagacaaatgccgcagttgctacaggcacacttactgacaagaccttacgctgaaaatatcctttttgagttatacgaggtagatctggcagctgagctgtgaaaaaaggcggagcaggtccgttcatgctaaaggtccagcctaggatgcagtggcttgatgctagcgggcctgttgcagctgataagccaacatatgcaacatccgtcagcacttgggagaggttataggacattgacaacagcggcttcatgggtttgggcatcttgaatggagccaaggacacatcaatccgcattgtccctgcatcgtactcaatccaaacttgcatggcctcgccactaattagactcaaattgtagaaggcacctgtgctatcatcgtagtagcttgccgaagaagatctcaccgagtgaagatcgcatatgtcgatgccaatgtggttgtcatctatgtccattagctcaatgttttgtgcagtgtcaatctcaacagcaaaaacacggttactcaaattgccgttgttttcgcgattgagcaggcccaggaactgcgcagccctcgcttcggacaaattagaggtcggggcaaccaagaaggccatgccgtcagtgctggcaccacggtagggagagacgatgccaaacaccaaggagacagagaaggactgcactgcggtatcaggcgacttacggaatcggaaaggagttggatggaaggcatggcccattatattgggcatgccgttggtcaggttgagcaatccccctggcagcaccgtggctgctccatcgatggtgagattgctgttggcgaagccgtagtacccgaactggccgtctcctatggctgtagcaaaggatggaaggataatgataactagcaggatgataatgaaaaggagtattggaagaaagcaccgaagattcactccggacat
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| CDS seq | atgtccggagtgaatcttcggtgctttcttccaatactccttttcattatcatcctgctagttatcattatccttccatcctttgctacagccataggagacggccagttcgggtactacggcttcgccaacagcaatctcaccatcgatggagcagccacggtgctgccagggggattgctcaacctgaccaacggcatgcccaatataatgggccatgccttccatccaactcctttccgattccgtaagtcgcctgataccgcagtgcagtccttctctgtctccttggtgtttggcatcgtctctccctaccgtggtgccagcactgacggcatggccttcttggttgccccgacctctaatttgtccgaagcgagggctgcgcagttcctgggcctgctcaatcgcgaaaacaacggcaatttgagtaaccgtgtttttgctgttgagattgacactgcacaaaacattgagctaatggacatagatgacaaccacattggcatcgacatatgcgatcttcactcggtgagatcttcttcggcaagctactacgatgatagcacaggtgccttctacaatttgagtctaattagtggcgaggccatgcaagtttggattgagtacgatgcagggacaatgcggattgatgtgtccttggctccattcaagatgcccaaacccatgaagccgctgttgtcaatgtcctataacctctcccaagtgctgacggatgttgcatatgttggcttatcagctgcaacaggcccgctagcatcaagccactgcatcctaggctggacctttagcatgaacggacctgctccgccttttttcacagctcagctgccagatctacctcgtataactcaaaaaggatattttcagcgtaaggtcttgtcagtaagtgtgcctgtagcaactgcggcatttgtctttatagtgggtttggctgtctatcttttcatgcgaaggcggatgaagtatgccgagctgcgagaagattgggaaattgagtttggaccacataggttctcatttaaggacctatattttgccacccaaggatttaagaataggcatctcttgggcagaggagggtttggaagtgtgtacaagggtcttctttccaaatctaagttgcagattgctgtgaagagggtgtctcatgagtcaaggcaaggtataagagaatttgtcgctgagattgttagcatcggccgtcttcgtcatcggaatattgtgcagttacttggatattgcagacgcaaaggtgaacttcttttggtctatgattatatgccaaacggtagccttgataaatatttgtatagtcgtagtaactgtattactttagattggattcaacgttttagaataatcaaaggtgttgcatctggtttattttaccttcatggggagtgggagaaagttgtcatccatcgagacgtcaaagctagcaatgtgcttcttgatgcagaaatgaatgcacgcctaggtgattttggccttgcaagattatatgaccatggtactgacatgcaaaccacacacctggttggcactataggatatcttgcccctgagctggtacgaagaggtaaggcttcacccctcacggatgtcttcgcctttggcatatttgttcttgaggttacttgtggaagaagacccattgagcataagatgaatagtgacaagctcttgttggtagactgggtgattgattgttggaacgagggatcacttcttgaggcaatggatccaaagctccaaaatgagtatgatgctgatgaagcatgcctagctttgaaactaggattgctttgctcacaccaatcacctgctgcaaggccaagcatgtggcatgtcatgcagtatcttaaccatgacttgccatttcccgagttggcgccaatggacatggtgcagaaccgtcaggtggactcacccgttgcatattgccaatcagtggtgagcgatggcaccatctctggcctctccgaagggaggtag
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| Protein seq | MSGVNLRCFLPILLFIIILLVIIILPSFATAIGDGQFGYYGFANSNLTIDGAATVLPGGLLNLTNGMPNIMGHAFHPTPFRFRKSPDTAVQSFSVSLVFGIVSPYRGASTDGMAFLVAPTSNLSEARAAQFLGLLNRENNGNLSNRVFAVEIDTAQNIELMDIDDNHIGIDICDLHSVRSSSASYYDDSTGAFYNLSLISGEAMQVWIEYDAGTMRIDVSLAPFKMPKPMKPLLSMSYNLSQVLTDVAYVGLSAATGPLASSHCILGWTFSMNGPAPPFFTAQLPDLPRITQKGYFQRKVLSVSVPVATAAFVFIVGLAVYLFMRRRMKYAELREDWEIEFGPHRFSFKDLYFATQGFKNRHLLGRGGFGSVYKGLLSKSKLQIAVKRVSHESRQGIREFVAEIVSIGRLRHRNIVQLLGYCRRKGELLLVYDYMPNGSLDKYLYSRSNCITLDWIQRFRIIKGVASGLFYLHGEWEKVVIHRDVKASNVLLDAEMNARLGDFGLARLYDHGTDMQTTHLVGTIGYLAPELVRRGKASPLTDVFAFGIFVLEVTCGRRPIEHKMNSDKLLLVDWVIDCWNEGSLLEAMDPKLQNEYDADEACLALKLGLLCSHQSPAARPSMWHVMQYLNHDLPFPELAPMDMVQNRQVDSPVAYCQSVVSDGTISGLSEGR |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0001900 | OsLima_07g0001900.01 | Chr07 | 1584931 | 1586949 | - | NAM | ||
| CDS seq | atgtccggagtgaatcttcggtgctttcttccaatactccttttcattatcatcctgctagttatcattatccttccatcctttgctacagccataggagacggccagttcgggtactacggcttcgccaacagcaatctcaccatcgatggagcagccacggtgctgccagggggattgctcaacctgaccaacggcatgcccaatataatgggccatgccttccatccaactcctttccgattccgtaagtcgcctgataccgcagtgcagtccttctctgtctccttggtgtttggcatcgtctctccctaccgtggtgccagcactgacggcatggccttcttggttgccccgacctctaatttgtccgaagcgagggctgcgcagttcctgggcctgctcaatcgcgaaaacaacggcaatttgagtaaccgtgtttttgctgttgagattgacactgcacaaaacattgagctaatggacatagatgacaaccacattggcatcgacatatgcgatcttcactcggtgagatcttcttcggcaagctactacgatgatagcacaggtgccttctacaatttgagtctaattagtggcgaggccatgcaagtttggattgagtacgatgcagggacaatgcggattgatgtgtccttggctccattcaagatgcccaaacccatgaagccgctgttgtcaatgtcctataacctctcccaagtgctgacggatgttgcatatgttggcttatcagctgcaacaggcccgctagcatcaagccactgcatcctaggctggacctttagcatgaacggacctgctccgccttttttcacagctcagctgccagatctacctcgtataactcaaaaaggatattttcagcgtaaggtcttgtcagtaagtgtgcctgtagcaactgcggcatttgtctttatagtgggtttggctgtctatcttttcatgcgaaggcggatgaagtatgccgagctgcgagaagattgggaaattgagtttggaccacataggttctcatttaaggacctatattttgccacccaaggatttaagaataggcatctcttgggcagaggagggtttggaagtgtgtacaagggtcttctttccaaatctaagttgcagattgctgtgaagagggtgtctcatgagtcaaggcaaggtataagagaatttgtcgctgagattgttagcatcggccgtcttcgtcatcggaatattgtgcagttacttggatattgcagacgcaaaggtgaacttcttttggtctatgattatatgccaaacggtagccttgataaatatttgtatagtcgtagtaactgtattactttagattggattcaacgttttagaataatcaaaggtgttgcatctggtttattttaccttcatggggagtgggagaaagttgtcatccatcgagacgtcaaagctagcaatgtgcttcttgatgcagaaatgaatgcacgcctaggtgattttggccttgcaagattatatgaccatggtactgacatgcaaaccacacacctggttggcactataggatatcttgcccctgagctggtacgaagaggtaaggcttcacccctcacggatgtcttcgcctttggcatatttgttcttgaggttacttgtggaagaagacccattgagcataagatgaatagtgacaagctcttgttggtagactgggtgattgattgttggaacgagggatcacttcttgaggcaatggatccaaagctccaaaatgagtatgatgctgatgaagcatgcctagctttgaaactaggattgctttgctcacaccaatcacctgctgcaaggccaagcatgtggcatgtcatgcagtatcttaaccatgacttgccatttcccgagttggcgccaatggacatggtgcagaaccgtcaggtggactcacccgttgcatattgccaatcagtggtgagcgatggcaccatctctggcctctccgaagggaggtag
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| Protein seq | MSGVNLRCFLPILLFIIILLVIIILPSFATAIGDGQFGYYGFANSNLTIDGAATVLPGGLLNLTNGMPNIMGHAFHPTPFRFRKSPDTAVQSFSVSLVFGIVSPYRGASTDGMAFLVAPTSNLSEARAAQFLGLLNRENNGNLSNRVFAVEIDTAQNIELMDIDDNHIGIDICDLHSVRSSSASYYDDSTGAFYNLSLISGEAMQVWIEYDAGTMRIDVSLAPFKMPKPMKPLLSMSYNLSQVLTDVAYVGLSAATGPLASSHCILGWTFSMNGPAPPFFTAQLPDLPRITQKGYFQRKVLSVSVPVATAAFVFIVGLAVYLFMRRRMKYAELREDWEIEFGPHRFSFKDLYFATQGFKNRHLLGRGGFGSVYKGLLSKSKLQIAVKRVSHESRQGIREFVAEIVSIGRLRHRNIVQLLGYCRRKGELLLVYDYMPNGSLDKYLYSRSNCITLDWIQRFRIIKGVASGLFYLHGEWEKVVIHRDVKASNVLLDAEMNARLGDFGLARLYDHGTDMQTTHLVGTIGYLAPELVRRGKASPLTDVFAFGIFVLEVTCGRRPIEHKMNSDKLLLVDWVIDCWNEGSLLEAMDPKLQNEYDADEACLALKLGLLCSHQSPAARPSMWHVMQYLNHDLPFPELAPMDMVQNRQVDSPVAYCQSVVSDGTISGLSEGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0131375 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g03970 | SBH | 0.163306 | 0.331478 | 0.073452 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0131375 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001860 | SBH | 0.794274 | 0.468260 | 0.961358 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001860 | SBH | 0.230921 | 0.095846 | 1.286250 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001790 | RBH | 0.789320 | 0.0 | 3.406892 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001790 | RBH | 0.008926 | 0.007383 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001800 | SBH | 6.989861 | 2.384900 | 3.853860 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0027700 | SBH | 0.87444 | 1.01045 | 0.5072425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001860 | SBH | 0.383437 | 0.079820 | 0.301511 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0024400 | SBH | 1.236949 | 0.5785255 | 1.0078525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001790 | SBH | 0.096715 | 0.031098 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001860 | SBH | 0.094928 | 0.222106 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001890 | RBH | 1.448470 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0002020 | RBH | 0.0 | 0.0 | 0.154711 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001830 | RBH | 0.020082 | 0.236248 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001860 | SBH | 0.719089 | 0.114321 | 0.484302 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001800 | SBH | 0.630874 | 5.298018 | 0.378688 |
