Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0024850 | OGI:02001240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:26039207-26044057 | ||||||||
| Gene Symbol | OsGIRL1, OsGIRL1-1, OsGIRL1-2, OsGIRL1-3, LP2, OsLP2 | ||||||||||
| DNA seq | gccctcatccagctcgaagttcagagtacacaaaccacccggcaaaacaaggcagaaaaggatgccgttctgtgcgctccggccgagcagaggtacgcagttctctctcctccccgtagtacttgaaacttcagtctgttccttttttttttctagtagctgccgctccccatgtttagtgctggggtttgggatgattgaattgtttaccctgcaaagctttcctgtttagacgactgagttcctagcacacgtatttgcacgggttacattcaaattcgataggacctgaaaataaaattgtatttgatactcaactattgcttttatctctataaattaaagtacattttatcagggttacgggttagggataccctttaccctttgatatacgtcacgtatcgatatggcatgcccgcgcatatatggacattctttgtatgtgttaaggaaatccttcacggaattggcagatgaaaagagacctactcggacaggattgggttgtcaacgtatcgtgtgcggttcgacgtcttcgagtcctgcttagagaccgcttgacctgcggtataaaaggaaCccccgggaagacctgaggggatcggatctcacagccaacaccaccaccacagcctacgaagtcggagcccgcgggagccaaatcgctgggaggtctagtcgaattaactcgattacgatctcgccggtttcatcgagttccatcgttccctttgtaacctgtgatttccattatataatcccataccaactagattagggatattacctatcaaggggcctgaaccagtataatcttcgtcttctatttgcttgatgtcgtactacgtagacccttacaacaacgtaccccaatactctttatatccggtctacgggtatcacctgtcgacacatttatattataaagtgggtgtgtctaaatttcaagtgactgatttttttttgcaaatttctatctttttcacgatggctgtggcaatttataagcccttctttataatatgacatataacatatagataatggacaaggattttctacacctagatgccatggcacctatcatttgcatgcaactcaaatagttatagaaaaaattgaaaaaaatttagtaacatcgtttgtgatgatacaagtctatacacaaacatgcagaactaaatttgatctacaactagagaaacaaaaataataaaatcagacagttaatagtactcgtacattgcggataaaatttgttatttttgtttcttcgtatatcgatcaaatttagacttgcatatttgcacaatgtcttatattatcatggattatcttatcaaattctatgaaataatttttatatAaACCGTTTAAATTACATGCATACACCTAGGTCTATAGCACCTAGGTGTAGAAAATACTTTCTGTATATATAATACATAGAAAAGATCAAGAACACTGTTTTAGTTTACCTGGTTTAACAGGTAGGTCCATGAGCACCACAGAGTAACCGCGTTAACCCCAACGAAGAACATGATGTAGTTGGTGTAGCTCGCTGCTGAGCATGCCATGCCAGATACCACAATGTTTATGTTCTTCATTTTTGCAGGTAACACGGGACATATGTGCGTCAAAAAACCCAACAAACTCGCTACGCTTATACTGTTTTCACTGCTGTTGCTGTGTTATGGGGCTGGCAACGTTCGTTGCGCAACCGTTCATGAGAACAGAGTAGATCTGCAGgcgctgcttgattttaagcagggcatcctcgatccaaatgatgccttgagcgactggaacaccagcatccacttctgtaggtggaccggtgtcaactgcagccaggcgagacctttgcgcgtcacggggctcaacctcactagcaaaggcttgtcaggccagatctcatcttctcttgggaacttaacgttcctccaaaatctttctctcgccgataataacttgaatggtcccatacctcttcttaataatctacaacacctggagatcctttatctgcgacaaaaccgtttgcacggaattattccagatgcacttacaaattgttccagcttaaccttcttaagcctttctagcaacaatctaaccggtgtgattcctcctagcataggtaatctttccaggctattagctttggacctttcccggaacaacctcaccggtattatcccacaaaccctcggaaaagttgctactttagaagctgttgatctttcagaaaatcaactcaacggacccgttcctgacgagctttggcaactgcaaaacataatccatttgatcctatcccaaaataatctatcaggtggacttccacaaagtctaccaaacatatcttctctccagggattatccttgacgtccaatatgttagtcaacacattgccatctaacatcggcgacgcgctacctaacctccgatatctatatttcggaatcaacatgttcgaaggtaacatcccagattcaataggcaatttttcaaagatagaacaattagaactgtcgtcaaataatttcaatggccatgtcccaagctctttaggaaagctttcgtacatgtcctatctaaaccttgagcataacaagcttgaagcaaatgacagcgaaagctggaaattcttccatgcgttggcaaattgtacttctctcaatgggttttcattatctaataatcagctacagggagtcataccaaattcgataggtaacttttctgtaaatcttcaatatgtactgatgggaggaaacaagctatcaggaactgttcctccaagcataggtaaatttcaggatttagttcaactctcactagaccaaaacaatcttacgggcaacattgaagaatggatcggaaacttcacaaagctacaacgtttagatctggaaatgaacaacttcttcgggacaattccaccctccattagcaatcttacacaattggtgattttgtctatagcagaaaatgaattcaccggttttctaccacttgattggggaggtcttcaagggttgcagacattaaaccttagccataacaatctccaagggagcataccttttgagtttggtaatcttaaacaactcttacaggtagacctttcgtcgaacaaatttagtggagaaattcctcaaaccttgggccaatgtcacctgctactgatcattcgaatggaccaaaacattcttactggaaacatcccgacctccttcagcaatctaaagagcttgagcctgctcaacctttCccataatagtttgtcgggtcctttgccaacatttttaaatgatttggacctcactaaactagatctgtctgacaataatttccaaggagtaataccaacaactggtgtattcagtaatgctacagctgtttcactaatcgggaattcgggactatgtggaggaaccatggatttgcatatgccttcatgccatgatgtttctcgtaaagcaggaagagtgaattatttggtcaaaatattgataccaatatttggcgtcatgtcactcataatattagtttactttttacttgttgagaaaaggacgtcaagatcacatttcaattaccaacctagttttggtgtgcattttgataaagttacttataaggacctagctcaagcaacaagagatttctcagaattgaacctgattgggagaggaagttatggctcggtgtacagaggaaagttgaaggagagcaaaatggaagtggctgtgaaggttttcaaccttgagatgagaggagcagagaaaagcttcttgtcagagtgtgaggcactaagaagcatccagcatcggaatcttcttcctattaaaaccgcttgctcaacagtagataacatgggcaacgttttcaaagctttagtttacgagttcatgcctaacgggaacctggacacatggttacatcacagagtggatgaggaagctccaaagcgtctagatttaactcaaagaataagcatagctgtcaacgtagctgatgcgttggattatttacaccatgactgcggacgacccactgtccattgtgacttgaagcccagtaatatccttcttgatgatgatatgaatgctcttttgggagatttcggcattgcaaggttttatgttaatgcccagtcaacatgtgcgggttcttctagttcagttgctctgaaggggacaataggatatattcctccaggtatttatagttactcagtatatcttcattttttcaggcaataaataactatcctttgtgagtaaagaaaaactgtaaccatactttgactcttcatattacttcttcagagtacgggggaggtggccatgcttcaacttctggggatgtttatagttttggtatagtgttgttggagattttgacatgcaaaaggccgacagatccaatgttcacggatggactggacattatcacctttgtggcgaacagctttccagatctcatatatgatgtcatcgatgctcatctcttgaaggaatgcaaaaagttgactcaggaaaagacggtatcagaagataagatctaccattggttggtggctctgctcgaagtatcaatctcgtgcacacgctcattaccgtctgaacgattgaacatgaagcaagtagccagcaaaatgcatgcaatcaagacgtcacatctggactggaaaagcaagaagtatacataagcagtgcgaaatgtacatgagctcttgtccgatggtccatcttacctttgttagcgtgaaatgtacaatcagcaggcattgtacatcaagtatattgtattaatggctacaagggaaacaccagccatat
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| CDS seq | atgccgttctgtgcgctccggccgagcagagGTAACACGGGACATATGTGCGTCAAAAAACCCAACAAACTCGCTACGCTTATACTGTTTTCACTGCTGTTGCTGTGTTATGGGGCTGGCAACGTTCGTTGCGCAACCGTTCATGAGAACAGAGTAGATCTGCAGgcgctgcttgattttaagcagggcatcctcgatccaaatgatgccttgagcgactggaacaccagcatccacttctgtaggtggaccggtgtcaactgcagccaggcgagacctttgcgcgtcacggggctcaacctcactagcaaaggcttgtcaggccagatctcatcttctcttgggaacttaacgttcctccaaaatctttctctcgccgataataacttgaatggtcccatacctcttcttaataatctacaacacctggagatcctttatctgcgacaaaaccgtttgcacggaattattccagatgcacttacaaattgttccagcttaaccttcttaagcctttctagcaacaatctaaccggtgtgattcctcctagcataggtaatctttccaggctattagctttggacctttcccggaacaacctcaccggtattatcccacaaaccctcggaaaagttgctactttagaagctgttgatctttcagaaaatcaactcaacggacccgttcctgacgagctttggcaactgcaaaacataatccatttgatcctatcccaaaataatctatcaggtggacttccacaaagtctaccaaacatatcttctctccagggattatccttgacgtccaatatgttagtcaacacattgccatctaacatcggcgacgcgctacctaacctccgatatctatatttcggaatcaacatgttcgaaggtaacatcccagattcaataggcaatttttcaaagatagaacaattagaactgtcgtcaaataatttcaatggccatgtcccaagctctttaggaaagctttcgtacatgtcctatctaaaccttgagcataacaagcttgaagcaaatgacagcgaaagctggaaattcttccatgcgttggcaaattgtacttctctcaatgggttttcattatctaataatcagctacagggagtcataccaaattcgataggtaacttttctgtaaatcttcaatatgtactgatgggaggaaacaagctatcaggaactgttcctccaagcataggtaaatttcaggatttagttcaactctcactagaccaaaacaatcttacgggcaacattgaagaatggatcggaaacttcacaaagctacaacgtttagatctggaaatgaacaacttcttcgggacaattccaccctccattagcaatcttacacaattggtgattttgtctatagcagaaaatgaattcaccggttttctaccacttgattggggaggtcttcaagggttgcagacattaaaccttagccataacaatctccaagggagcataccttttgagtttggtaatcttaaacaactcttacaggtagacctttcgtcgaacaaatttagtggagaaattcctcaaaccttgggccaatgtcacctgctactgatcattcgaatggaccaaaacattcttactggaaacatcccgacctccttcagcaatctaaagagcttgagcctgctcaacctttCccataatagtttgtcgggtcctttgccaacatttttaaatgatttggacctcactaaactagatctgtctgacaataatttccaaggagtaataccaacaactggtgtattcagtaatgctacagctgtttcactaatcgggaattcgggactatgtggaggaaccatggatttgcatatgccttcatgccatgatgtttctcgtaaagcaggaagagtgaattatttggtcaaaatattgataccaatatttggcgtcatgtcactcataatattagtttactttttacttgttgagaaaaggacgtcaagatcacatttcaattaccaacctagttttggtgtgcattttgataaagttacttataaggacctagctcaagcaacaagagatttctcagaattgaacctgattgggagaggaagttatggctcggtgtacagaggaaagttgaaggagagcaaaatggaagtggctgtgaaggttttcaaccttgagatgagaggagcagagaaaagcttcttgtcagagtgtgaggcactaagaagcatccagcatcggaatcttcttcctattaaaaccgcttgctcaacagtagataacatgggcaacgttttcaaagctttagtttacgagttcatgcctaacgggaacctggacacatggttacatcacagagtggatgaggaagctccaaagcgtctagatttaactcaaagaataagcatagctgtcaacgtagctgatgcgttggattatttacaccatgactgcggacgacccactgtccattgtgacttgaagcccagtaatatccttcttgatgatgatatgaatgctcttttgggagatttcggcattgcaaggttttatgttaatgcccagtcaacatgtgcgggttcttctagttcagttgctctgaaggggacaataggatatattcctccagagtacgggggaggtggccatgcttcaacttctggggatgtttatagttttggtatagtgttgttggagattttgacatgcaaaaggccgacagatccaatgttcacggatggactggacattatcacctttgtggcgaacagctttccagatctcatatatgatgtcatcgatgctcatctcttgaaggaatgcaaaaagttgactcaggaaaagacggtatcagaagataagatctaccattggttggtggctctgctcgaagtatcaatctcgtgcacacgctcattaccgtctgaacgattgaacatgaagcaagtagccagcaaaatgcatgcaatcaagacgtcacatctggactggaaaagcaagaagtatacataa
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| Protein seq | MPFCALRPSRGNTGHMCVKKPNKLATLILFSLLLLCYGAGNVRCATVHENRVDLQALLDFKQGILDPNDALSDWNTSIHFCRWTGVNCSQARPLRVTGLNLTSKGLSGQISSSLGNLTFLQNLSLADNNLNGPIPLLNNLQHLEILYLRQNRLHGIIPDALTNCSSLTFLSLSSNNLTGVIPPSIGNLSRLLALDLSRNNLTGIIPQTLGKVATLEAVDLSENQLNGPVPDELWQLQNIIHLILSQNNLSGGLPQSLPNISSLQGLSLTSNMLVNTLPSNIGDALPNLRYLYFGINMFEGNIPDSIGNFSKIEQLELSSNNFNGHVPSSLGKLSYMSYLNLEHNKLEANDSESWKFFHALANCTSLNGFSLSNNQLQGVIPNSIGNFSVNLQYVLMGGNKLSGTVPPSIGKFQDLVQLSLDQNNLTGNIEEWIGNFTKLQRLDLEMNNFFGTIPPSISNLTQLVILSIAENEFTGFLPLDWGGLQGLQTLNLSHNNLQGSIPFEFGNLKQLLQVDLSSNKFSGEIPQTLGQCHLLLIIRMDQNILTGNIPTSFSNLKSLSLLNLSHNSLSGPLPTFLNDLDLTKLDLSDNNFQGVIPTTGVFSNATAVSLIGNSGLCGGTMDLHMPSCHDVSRKAGRVNYLVKILIPIFGVMSLIILVYFLLVEKRTSRSHFNYQPSFGVHFDKVTYKDLAQATRDFSELNLIGRGSYGSVYRGKLKESKMEVAVKVFNLEMRGAEKSFLSECEALRSIQHRNLLPIKTACSTVDNMGNVFKALVYEFMPNGNLDTWLHHRVDEEAPKRLDLTQRISIAVNVADALDYLHHDCGRPTVHCDLKPSNILLDDDMNALLGDFGIARFYVNAQSTCAGSSSSVALKGTIGYIPPEYGGGGHASTSGDVYSFGIVLLEILTCKRPTDPMFTDGLDIITFVANSFPDLIYDVIDAHLLKECKKLTQEKTVSEDKIYHWLVALLEVSISCTRSLPSERLNMKQVASKMHAIKTSHLDWKSKKYT |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q2R2D5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024850 | OsLima_02g0024850.01 | Chr02 | 26039207 | 26044057 | + | NAM | ||
| CDS seq | atgccgttctgtgcgctccggccgagcagagGTAACACGGGACATATGTGCGTCAAAAAACCCAACAAACTCGCTACGCTTATACTGTTTTCACTGCTGTTGCTGTGTTATGGGGCTGGCAACGTTCGTTGCGCAACCGTTCATGAGAACAGAGTAGATCTGCAGgcgctgcttgattttaagcagggcatcctcgatccaaatgatgccttgagcgactggaacaccagcatccacttctgtaggtggaccggtgtcaactgcagccaggcgagacctttgcgcgtcacggggctcaacctcactagcaaaggcttgtcaggccagatctcatcttctcttgggaacttaacgttcctccaaaatctttctctcgccgataataacttgaatggtcccatacctcttcttaataatctacaacacctggagatcctttatctgcgacaaaaccgtttgcacggaattattccagatgcacttacaaattgttccagcttaaccttcttaagcctttctagcaacaatctaaccggtgtgattcctcctagcataggtaatctttccaggctattagctttggacctttcccggaacaacctcaccggtattatcccacaaaccctcggaaaagttgctactttagaagctgttgatctttcagaaaatcaactcaacggacccgttcctgacgagctttggcaactgcaaaacataatccatttgatcctatcccaaaataatctatcaggtggacttccacaaagtctaccaaacatatcttctctccagggattatccttgacgtccaatatgttagtcaacacattgccatctaacatcggcgacgcgctacctaacctccgatatctatatttcggaatcaacatgttcgaaggtaacatcccagattcaataggcaatttttcaaagatagaacaattagaactgtcgtcaaataatttcaatggccatgtcccaagctctttaggaaagctttcgtacatgtcctatctaaaccttgagcataacaagcttgaagcaaatgacagcgaaagctggaaattcttccatgcgttggcaaattgtacttctctcaatgggttttcattatctaataatcagctacagggagtcataccaaattcgataggtaacttttctgtaaatcttcaatatgtactgatgggaggaaacaagctatcaggaactgttcctccaagcataggtaaatttcaggatttagttcaactctcactagaccaaaacaatcttacgggcaacattgaagaatggatcggaaacttcacaaagctacaacgtttagatctggaaatgaacaacttcttcgggacaattccaccctccattagcaatcttacacaattggtgattttgtctatagcagaaaatgaattcaccggttttctaccacttgattggggaggtcttcaagggttgcagacattaaaccttagccataacaatctccaagggagcataccttttgagtttggtaatcttaaacaactcttacaggtagacctttcgtcgaacaaatttagtggagaaattcctcaaaccttgggccaatgtcacctgctactgatcattcgaatggaccaaaacattcttactggaaacatcccgacctccttcagcaatctaaagagcttgagcctgctcaacctttCccataatagtttgtcgggtcctttgccaacatttttaaatgatttggacctcactaaactagatctgtctgacaataatttccaaggagtaataccaacaactggtgtattcagtaatgctacagctgtttcactaatcgggaattcgggactatgtggaggaaccatggatttgcatatgccttcatgccatgatgtttctcgtaaagcaggaagagtgaattatttggtcaaaatattgataccaatatttggcgtcatgtcactcataatattagtttactttttacttgttgagaaaaggacgtcaagatcacatttcaattaccaacctagttttggtgtgcattttgataaagttacttataaggacctagctcaagcaacaagagatttctcagaattgaacctgattgggagaggaagttatggctcggtgtacagaggaaagttgaaggagagcaaaatggaagtggctgtgaaggttttcaaccttgagatgagaggagcagagaaaagcttcttgtcagagtgtgaggcactaagaagcatccagcatcggaatcttcttcctattaaaaccgcttgctcaacagtagataacatgggcaacgttttcaaagctttagtttacgagttcatgcctaacgggaacctggacacatggttacatcacagagtggatgaggaagctccaaagcgtctagatttaactcaaagaataagcatagctgtcaacgtagctgatgcgttggattatttacaccatgactgcggacgacccactgtccattgtgacttgaagcccagtaatatccttcttgatgatgatatgaatgctcttttgggagatttcggcattgcaaggttttatgttaatgcccagtcaacatgtgcgggttcttctagttcagttgctctgaaggggacaataggatatattcctccagagtacgggggaggtggccatgcttcaacttctggggatgtttatagttttggtatagtgttgttggagattttgacatgcaaaaggccgacagatccaatgttcacggatggactggacattatcacctttgtggcgaacagctttccagatctcatatatgatgtcatcgatgctcatctcttgaaggaatgcaaaaagttgactcaggaaaagacggtatcagaagataagatctaccattggttggtggctctgctcgaagtatcaatctcgtgcacacgctcattaccgtctgaacgattgaacatgaagcaagtagccagcaaaatgcatgcaatcaagacgtcacatctggactggaaaagcaagaagtatacataa
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| Protein seq | MPFCALRPSRGNTGHMCVKKPNKLATLILFSLLLLCYGAGNVRCATVHENRVDLQALLDFKQGILDPNDALSDWNTSIHFCRWTGVNCSQARPLRVTGLNLTSKGLSGQISSSLGNLTFLQNLSLADNNLNGPIPLLNNLQHLEILYLRQNRLHGIIPDALTNCSSLTFLSLSSNNLTGVIPPSIGNLSRLLALDLSRNNLTGIIPQTLGKVATLEAVDLSENQLNGPVPDELWQLQNIIHLILSQNNLSGGLPQSLPNISSLQGLSLTSNMLVNTLPSNIGDALPNLRYLYFGINMFEGNIPDSIGNFSKIEQLELSSNNFNGHVPSSLGKLSYMSYLNLEHNKLEANDSESWKFFHALANCTSLNGFSLSNNQLQGVIPNSIGNFSVNLQYVLMGGNKLSGTVPPSIGKFQDLVQLSLDQNNLTGNIEEWIGNFTKLQRLDLEMNNFFGTIPPSISNLTQLVILSIAENEFTGFLPLDWGGLQGLQTLNLSHNNLQGSIPFEFGNLKQLLQVDLSSNKFSGEIPQTLGQCHLLLIIRMDQNILTGNIPTSFSNLKSLSLLNLSHNSLSGPLPTFLNDLDLTKLDLSDNNFQGVIPTTGVFSNATAVSLIGNSGLCGGTMDLHMPSCHDVSRKAGRVNYLVKILIPIFGVMSLIILVYFLLVEKRTSRSHFNYQPSFGVHFDKVTYKDLAQATRDFSELNLIGRGSYGSVYRGKLKESKMEVAVKVFNLEMRGAEKSFLSECEALRSIQHRNLLPIKTACSTVDNMGNVFKALVYEFMPNGNLDTWLHHRVDEEAPKRLDLTQRISIAVNVADALDYLHHDCGRPTVHCDLKPSNILLDDDMNALLGDFGIARFYVNAQSTCAGSSSSVALKGTIGYIPPEYGGGGHASTSGDVYSFGIVLLEILTCKRPTDPMFTDGLDIITFVANSFPDLIYDVIDAHLLKECKKLTQEKTVSEDKIYHWLVALLEVSISCTRSLPSERLNMKQVASKMHAIKTSHLDWKSKKYT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024850 | OsLima_02g0024850.02 | Chr02 | 26039208 | 26044057 | + | NAM | ||
| CDS seq | atgccgttctgtgcgctccggccgagcagagGTAACACGGGACATATGTGCGTCAAAAAACCCAACAAACTCGCTACGCTTATACTGTTTTCACTGCTGTTGCTGTGTTATGGGGCTGGCAACGTTCGTTGCGCAACCGTTCATGAGAACAGAGTAGATCTGCAGgcgctgcttgattttaagcagggcatcctcgatccaaatgatgccttgagcgactggaacaccagcatccacttctgtaggtggaccggtgtcaactgcagccaggcgagacctttgcgcgtcacggggctcaacctcactagcaaaggcttgtcaggccagatctcatcttctcttgggaacttaacgttcctccaaaatctttctctcgccgataataacttgaatggtcccatacctcttcttaataatctacaacacctggagatcctttatctgcgacaaaaccgtttgcacggaattattccagatgcacttacaaattgttccagcttaaccttcttaagcctttctagcaacaatctaaccggtgtgattcctcctagcataggtaatctttccaggctattagctttggacctttcccggaacaacctcaccggtattatcccacaaaccctcggaaaagttgctactttagaagctgttgatctttcagaaaatcaactcaacggacccgttcctgacgagctttggcaactgcaaaacataatccatttgatcctatcccaaaataatctatcaggtggacttccacaaagtctaccaaacatatcttctctccagggattatccttgacgtccaatatgttagtcaacacattgccatctaacatcggcgacgcgctacctaacctccgatatctatatttcggaatcaacatgttcgaaggtaacatcccagattcaataggcaatttttcaaagatagaacaattagaactgtcgtcaaataatttcaatggccatgtcccaagctctttaggaaagctttcgtacatgtcctatctaaaccttgagcataacaagcttgaagcaaatgacagcgaaagctggaaattcttccatgcgttggcaaattgtacttctctcaatgggttttcattatctaataatcagctacagggagtcataccaaattcgataggtaacttttctgtaaatcttcaatatgtactgatgggaggaaacaagctatcaggaactgttcctccaagcataggtaaatttcaggatttagttcaactctcactagaccaaaacaatcttacgggcaacattgaagaatggatcggaaacttcacaaagctacaacgtttagatctggaaatgaacaacttcttcgggacaattccaccctccattagcaatcttacacaattggtgattttgtctatagcagaaaatgaattcaccggttttctaccacttgattggggaggtcttcaagggttgcagacattaaaccttagccataacaatctccaagggagcataccttttgagtttggtaatcttaaacaactcttacaggtagacctttcgtcgaacaaatttagtggagaaattcctcaaaccttgggccaatgtcacctgctactgatcattcgaatggaccaaaacattcttactggaaacatcccgacctccttcagcaatctaaagagcttgagcctgctcaacctttCccataatagtttgtcgggtcctttgccaacatttttaaatgatttggacctcactaaactagatctgtctgacaataatttccaaggagtaataccaacaactggtgtattcagtaatgctacagctgtttcactaatcgggaattcgggactatgtggaggaaccatggatttgcatatgccttcatgccatgatgtttctcgtaaagcaggaagagtgaattatttggtcaaaatattgataccaatatttggcgtcatgtcactcataatattagtttactttttacttgttgagaaaaggacgtcaagatcacatttcaattaccaacctagttttggtgtgcattttgataaagttacttataaggacctagctcaagcaacaagagatttctcagaattgaacctgattgggagaggaagttatggctcggtgtacagaggaaagttgaaggagagcaaaatggaagtggctgtgaaggttttcaaccttgagatgagaggagcagagaaaagcttcttgtcagagtgtgaggcactaagaagcatccagcatcggaatcttcttcctattaaaaccgcttgctcaacagtagataacatgggcaacgttttcaaagctttagtttacgagttcatgcctaacgggaacctggacacatggttacatcacagagtggatgaggaagctccaaagcgtctagatttaactcaaagaataagcatagctgtcaacgtagctgatgcgttggattatttacaccatgactgcggacgacccactgtccattgtgacttgaagcccagtaatatccttcttgatgatgatatgaatgctcttttgggagatttcggcattgcaaggttttatgttaatgcccagtcaacatgtgcgggttcttctagttcagttgctctgaaggggacaataggatatattcctccaggtatttatagttactcagtatatcttcattttttcaggcaataa
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| Protein seq | MPFCALRPSRGNTGHMCVKKPNKLATLILFSLLLLCYGAGNVRCATVHENRVDLQALLDFKQGILDPNDALSDWNTSIHFCRWTGVNCSQARPLRVTGLNLTSKGLSGQISSSLGNLTFLQNLSLADNNLNGPIPLLNNLQHLEILYLRQNRLHGIIPDALTNCSSLTFLSLSSNNLTGVIPPSIGNLSRLLALDLSRNNLTGIIPQTLGKVATLEAVDLSENQLNGPVPDELWQLQNIIHLILSQNNLSGGLPQSLPNISSLQGLSLTSNMLVNTLPSNIGDALPNLRYLYFGINMFEGNIPDSIGNFSKIEQLELSSNNFNGHVPSSLGKLSYMSYLNLEHNKLEANDSESWKFFHALANCTSLNGFSLSNNQLQGVIPNSIGNFSVNLQYVLMGGNKLSGTVPPSIGKFQDLVQLSLDQNNLTGNIEEWIGNFTKLQRLDLEMNNFFGTIPPSISNLTQLVILSIAENEFTGFLPLDWGGLQGLQTLNLSHNNLQGSIPFEFGNLKQLLQVDLSSNKFSGEIPQTLGQCHLLLIIRMDQNILTGNIPTSFSNLKSLSLLNLSHNSLSGPLPTFLNDLDLTKLDLSDNNFQGVIPTTGVFSNATAVSLIGNSGLCGGTMDLHMPSCHDVSRKAGRVNYLVKILIPIFGVMSLIILVYFLLVEKRTSRSHFNYQPSFGVHFDKVTYKDLAQATRDFSELNLIGRGSYGSVYRGKLKESKMEVAVKVFNLEMRGAEKSFLSECEALRSIQHRNLLPIKTACSTVDNMGNVFKALVYEFMPNGNLDTWLHHRVDEEAPKRLDLTQRISIAVNVADALDYLHHDCGRPTVHCDLKPSNILLDDDMNALLGDFGIARFYVNAQSTCAGSSSSVALKGTIGYIPPGIYSYSVYLHFFRQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024850 | OsLima_02g0024850.03 | Chr02 | 26039208 | 26040319 | + | IsoSeq | ||
| CDS seq | ccctcatccagctcgaagttcagagtacacaaaccacccggcaaaacaaggcagaaaaggatgccgttctgtgcgctccggccgagcagaggtacgcagttctctctcctccccgtagtacttgaaacttcagtctgttccttttttttttctagtagctgccgctccccatgtttagtgctggggtttgggatgattgaattgtttaccctgcaaagctttcct
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| Protein seq | PSSSSKFRVHKPPGKTRQKRMPFCALRPSRGTQFSLLPVVLETSVCSFFFSSSCRSPCLVLGFGMIELFTLQSFP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 26040822 | 26044057 | + | OsLima_02g0024850.02 | OsLima_02g0024850.01,OsLima_02g0024850.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 25.960310 | 0.035675 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0615800 | RBH | 47.578331 | 42.379108 | 23.843420 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40130 | SBH | 0.573867 | 1.093673 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | SBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | SBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025050 | SBH | 0.778974 | 0.000000 | 0.521185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024670 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024600 | SBH | 1.744725 | 5.268727 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0396300 | SBH | 0.6404455 | 0.2594735 | 0.4822715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024560 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0425300 | SBH | 0.877423 | 0.2626745 | 4.1508945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024840 | SBH | 0.416905 | 0.027276 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024640 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024950 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024410 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024890 | SBH | 0.206270 | 0.000000 | 0.311611 |
