Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0615800 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:24350730-24354488 | ||||||||
| Gene Symbol | LP2, OsLP2 | ||||||||||
| DNA seq | GAGCAAAGTTCAGAGTTCACAAACCACCACACCCAGCGGCACCATAGACACCAAGCAGAACAGGCTGCTGAGCTCCGGCCGACCGAAGGTGCTCCATTCTCTCTCCTCATCATTATTGATATTTGCAGGATCGATCACTTGAGGTAAATCATAGAAGCTCAAAGTGAAGTGCGAATATTTTTGAAAAATTGAGTTTTGTTCTGCTTTTAAGCTTTGAAAAGTCAGATGTGTTCGTGGATGATCACATAAGCGACCATTTGCCTCGATCGGTTAGCATAGGCAGCATGCCATAATGTTCATGGTTGTATATTTTTGCAGGTAACATGGGCCTCACGTGTGATACACAAACTGCAAAACTGGCCATTATACTACTAGCATTCATACTGCTATGTCATGGGATTGGCAACGTCGATTGCCGTGGGAACAGAGCCGATCAGCTCTCACTGCTTGATTTCAAGAAGGGCATCACCAACGATCCATATGGAGCCTTGGCCACTTGGAACACCAGCACACATTTCTGTAGGTGGCAAGGTGTCAAGTGCACCTCCACTGGGCCATGGCGCGTCATGGCGCTCAATCTCTCCAGCCAAAGTTTGACAGGCCAAATAAGGTCCTCTCTCGGAAACCTATCCTTCCTTAATATACTTGACCTCGGCGATAATAACTTACTTGGCTCCTTACCTCGCCTTGGCAATCTTAAGCAACTTCAGGCACTCTATCTGTATAAAAACAATTTGACAGGGATAATTCCTGATGAACTTACAAATTGTTCCAGCTTAACGTACATAGACCTCTCAGGAAATGCCCTAACTGGTGCACTTCCTCCAAATTTAGGCTCTCTGTCCAATCTAGCTTATCTTTATCTTTCTGCGAACAAGCTAACTGGAACCATCCCGCAGGCCCTTGGCAACATCACCACCTTGGTAGAAATCTATCTTGATACAAATCGATTCGAAGGGGGCATTCCAGACAAGCTTTGGCAATTGCCGAACTTGACAATTTTGGCCCTAGGTCAAAACATGCTATCGGGTGATATCCCATTTAACTTCTCCAGCCTTTCTCTTCAACTTTTAAGCTTGGAATACAATATGTTCGGCAAGGTATTGCCACAAAACATTAGTGATATGGTACCTAATCTCCAAATTCTTCGCTTGGATTACAATATGTTCCAAGGTCAAATCCCATCTTCTCTAGGAAATGCTTTGCAGCTAACAGAAATAAGTATGGCAAACAACTACTTCACCGGGCAAATTCCTAGCTCTTTCGGAAAGCTTTCTAAACTCTCCTATATTAGTCTCGAAAATAATAGCCTAGAGGCTTCTGATGGCCAAGGCTGGGAGTTCCTACACGCGTTGAGAAACTGTAGTAATCTAGAACTGTTGTCACTGGCTCAAAATCAGCTACAAGGAGAAATACCGAATTCAATTGGGGACCTTCCGCTCAAACTTCAACAGCTAGTGCTGAGTGAAAATAAGCTATCAGGAGAAGTTCCAGCAAGCATAGGAAACCTTCAGGGCCTGTTTAGGTTAAGTCTAGATTTGAACAATCTTACTGGCAAAATAGATGAGTGGGTTCCAAAGCTTACAAAACTGCAAAAATTACTTCTCCACAGGAACAACTTTAGCGGGTCGATTCCATCGTCTATAGCAGAGCTTCCTCGTTTGTCAACGCTTTCACTAGCATATAATGCATTTGATGGTCCCATACCATCCTCATTGGGAAACCTTTCAGGACTCCAGAAGTTATATCTAAGTCATAATAATCTCGAAGGTGTCATACCTCCAGAGCTTAGTTACCTTAAACAACTAATAAATCTAAGTTTATCAGAAAACAAGCTTACTGGGGAGATCCCTGGCACTTTGAGCCAGTGTAAAGACCTGGCAAACATCCAAATGGGCAATAACTTCCTTACTGGCAATATCCCAGTAACTTTTGGCGACCTAAAGAGCCTGGGCGTACTCAATCTTTCCCATAACAGCTTGTCGGGCACAATTCCGACTACACTAAATGATCTACCAGTCATGAGCAAACTGGACCTTTCATACAATCGTCTCCAAGGAAAAATACCAATGACTGGAATATTTGCAAATCCTACTGTTGTTTCGGTCCAGGGAAACATAGGACTATGTGGAGGAGTGATGGATCTCCGTATGCCCCCATGCCAAGTTGTTTCCCAGAGAAGAAAAACACAGTACTATTTGATTAGAGTATTGATCCCTATATTTGGCTTCATGTCACTCATATTAGTGGTCTACTTCTTACTTCTTGAGAAGATGAAGCCAAGAGAAAAATATATATCCTCGCAATCTTTTGGTGAGAATTTCCTTAAAGTCTCATATAATGATCTAGCTCAAGCCACAAGAAACTTCTCGGAGGCTAACCTTATTGGCAAAGGAAGCTATGGTACGGTGTACAGAGGTAAGTTGAAGGAATGTAAGTTGGAAGTAGCCGTGAAGGTTTTTGACCTTGAGATGCGAGGTGCCGAAAGAAGCTTCATATCGGAATGTGAAGCTCTCAGAAGCATTCAACATAGAAATCTTCTTCCAATCATAACTGCATGCTCGACCGTGGACAGTACGGGCAACGTTTTCAAAGCTTTAGTTTACGAGTACATGCCTAATGGCAACTTGGACACTTGGATACATGACAAAGAGGGTGGGAAAGCTCCCGGACGTTTGGGTTTAAGACAAACAATTAGCATATGTGTTAACATAGCCGATGCACTGGACTATTTACACCATGAATGCGGAAGAACAACTATCCATTGTGATTTGAAACCCAGCAATATACTTTTAGCTGATGACATGAATGCTCTTTTGGGAGATTTTGGCATTGCAAGATTTTATATCGACTCTTGGTCGACATCAACAGGTTCGAATAGTACAGTCGGTGTTAAGGGTACCATAGGGTATATTCCTCCAGGTAATTAATATGGCTACTTCTGAGTTCAGTTTCAGCTTTTGTTATAGACAGCTAAATAGATAACTGTACTTTCTCTTCATACCTATGTAGAGTACGCGGGAGGTGGTCATCCATCTACTTCTGGGGATGTTTATAGTTTCGGGATAGTGATCCTGGAGCTTATAACAGGAAAAAGACCGACTGATCCTATGTTCAAAGACGGACTCGACATTATCAGCTTTGTCGAGAGTAACTTTCCACACCAGATATTTCAAGTGATTGATGCTCGACTCGCAGAAAAGTCCATGGACTCCAATCAAACAAATATGACACTGGAAAATGCTGTCCACCAGTGCTTGATATCTCTGCTACAACTTGCGCTTTCTTGTACGCGCAAATTACCAAGTGATCGCATGAACATGAAACAAATAGCCAACAAGATGCATTCAATCAAGACGACATATGTTGGATTGGAAGCTAAGAAATATGGTCCGGCATGTAATGAACAAGATGCATGAAACCCCACGCGTTATTACAGGCGACCCTGAGTCGCGCACAACAATTGCAACATATTGATAAGTGTATAGTCCAACAAGAAGAAAATGGTTCTTGTGTGTTAGAAGTTAAGATAATTAAGGTGATAATATGAAGCACCAAAGCGTACCTTCTAACGGTGATAATATGAAGATTGGTGATTGTGACTTTATGTCATGGTTTATTTATAACAATATATTACTTCAATAATGTAATAGTATATGTATACGTAGATAATGATGTTGTACCTAGCATGATCTTGTATTATATGCAAGTTGAACTAATAAAAAACCATTTCTGCAGGCACCCCTGCTTTATTTTCAT
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| CDS seq | ATGGGCCTCACGTGTGATACACAAACTGCAAAACTGGCCATTATACTACTAGCATTCATACTGCTATGTCATGGGATTGGCAACGTCGATTGCCGTGGGAACAGAGCCGATCAGCTCTCACTGCTTGATTTCAAGAAGGGCATCACCAACGATCCATATGGAGCCTTGGCCACTTGGAACACCAGCACACATTTCTGTAGGTGGCAAGGTGTCAAGTGCACCTCCACTGGGCCATGGCGCGTCATGGCGCTCAATCTCTCCAGCCAAAGTTTGACAGGCCAAATAAGGTCCTCTCTCGGAAACCTATCCTTCCTTAATATACTTGACCTCGGCGATAATAACTTACTTGGCTCCTTACCTCGCCTTGGCAATCTTAAGCAACTTCAGGCACTCTATCTGTATAAAAACAATTTGACAGGGATAATTCCTGATGAACTTACAAATTGTTCCAGCTTAACGTACATAGACCTCTCAGGAAATGCCCTAACTGGTGCACTTCCTCCAAATTTAGGCTCTCTGTCCAATCTAGCTTATCTTTATCTTTCTGCGAACAAGCTAACTGGAACCATCCCGCAGGCCCTTGGCAACATCACCACCTTGGTAGAAATCTATCTTGATACAAATCGATTCGAAGGGGGCATTCCAGACAAGCTTTGGCAATTGCCGAACTTGACAATTTTGGCCCTAGGTCAAAACATGCTATCGGGTGATATCCCATTTAACTTCTCCAGCCTTTCTCTTCAACTTTTAAGCTTGGAATACAATATGTTCGGCAAGGTATTGCCACAAAACATTAGTGATATGGTACCTAATCTCCAAATTCTTCGCTTGGATTACAATATGTTCCAAGGTCAAATCCCATCTTCTCTAGGAAATGCTTTGCAGCTAACAGAAATAAGTATGGCAAACAACTACTTCACCGGGCAAATTCCTAGCTCTTTCGGAAAGCTTTCTAAACTCTCCTATATTAGTCTCGAAAATAATAGCCTAGAGGCTTCTGATGGCCAAGGCTGGGAGTTCCTACACGCGTTGAGAAACTGTAGTAATCTAGAACTGTTGTCACTGGCTCAAAATCAGCTACAAGGAGAAATACCGAATTCAATTGGGGACCTTCCGCTCAAACTTCAACAGCTAGTGCTGAGTGAAAATAAGCTATCAGGAGAAGTTCCAGCAAGCATAGGAAACCTTCAGGGCCTGTTTAGGTTAAGTCTAGATTTGAACAATCTTACTGGCAAAATAGATGAGTGGGTTCCAAAGCTTACAAAACTGCAAAAATTACTTCTCCACAGGAACAACTTTAGCGGGTCGATTCCATCGTCTATAGCAGAGCTTCCTCGTTTGTCAACGCTTTCACTAGCATATAATGCATTTGATGGTCCCATACCATCCTCATTGGGAAACCTTTCAGGACTCCAGAAGTTATATCTAAGTCATAATAATCTCGAAGGTGTCATACCTCCAGAGCTTAGTTACCTTAAACAACTAATAAATCTAAGTTTATCAGAAAACAAGCTTACTGGGGAGATCCCTGGCACTTTGAGCCAGTGTAAAGACCTGGCAAACATCCAAATGGGCAATAACTTCCTTACTGGCAATATCCCAGTAACTTTTGGCGACCTAAAGAGCCTGGGCGTACTCAATCTTTCCCATAACAGCTTGTCGGGCACAATTCCGACTACACTAAATGATCTACCAGTCATGAGCAAACTGGACCTTTCATACAATCGTCTCCAAGGAAAAATACCAATGACTGGAATATTTGCAAATCCTACTGTTGTTTCGGTCCAGGGAAACATAGGACTATGTGGAGGAGTGATGGATCTCCGTATGCCCCCATGCCAAGTTGTTTCCCAGAGAAGAAAAACACAGTACTATTTGATTAGAGTATTGATCCCTATATTTGGCTTCATGTCACTCATATTAGTGGTCTACTTCTTACTTCTTGAGAAGATGAAGCCAAGAGAAAAATATATATCCTCGCAATCTTTTGGTGAGAATTTCCTTAAAGTCTCATATAATGATCTAGCTCAAGCCACAAGAAACTTCTCGGAGGCTAACCTTATTGGCAAAGGAAGCTATGGTACGGTGTACAGAGGTAAGTTGAAGGAATGTAAGTTGGAAGTAGCCGTGAAGGTTTTTGACCTTGAGATGCGAGGTGCCGAAAGAAGCTTCATATCGGAATGTGAAGCTCTCAGAAGCATTCAACATAGAAATCTTCTTCCAATCATAACTGCATGCTCGACCGTGGACAGTACGGGCAACGTTTTCAAAGCTTTAGTTTACGAGTACATGCCTAATGGCAACTTGGACACTTGGATACATGACAAAGAGGGTGGGAAAGCTCCCGGACGTTTGGGTTTAAGACAAACAATTAGCATATGTGTTAACATAGCCGATGCACTGGACTATTTACACCATGAATGCGGAAGAACAACTATCCATTGTGATTTGAAACCCAGCAATATACTTTTAGCTGATGACATGAATGCTCTTTTGGGAGATTTTGGCATTGCAAGATTTTATATCGACTCTTGGTCGACATCAACAGGTTCGAATAGTACAGTCGGTGTTAAGGGTACCATAGGGTATATTCCTCCAGAGTACGCGGGAGGTGGTCATCCATCTACTTCTGGGGATGTTTATAGTTTCGGGATAGTGATCCTGGAGCTTATAACAGGAAAAAGACCGACTGATCCTATGTTCAAAGACGGACTCGACATTATCAGCTTTGTCGAGAGTAACTTTCCACACCAGATATTTCAAGTGATTGATGCTCGACTCGCAGAAAAGTCCATGGACTCCAATCAAACAAATATGACACTGGAAAATGCTGTCCACCAGTGCTTGATATCTCTGCTACAACTTGCGCTTTCTTGTACGCGCAAATTACCAAGTGATCGCATGAACATGAAACAAATAGCCAACAAGATGCATTCAATCAAGACGACATATGTTGGATTGGAAGCTAAGAAATATGGTCCGGCATGTAATGAACAAGATGCATGA
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| Protein seq | MGLTCDTQTAKLAIILLAFILLCHGIGNVDCRGNRADQLSLLDFKKGITNDPYGALATWNTSTHFCRWQGVKCTSTGPWRVMALNLSSQSLTGQIRSSLGNLSFLNILDLGDNNLLGSLPRLGNLKQLQALYLYKNNLTGIIPDELTNCSSLTYIDLSGNALTGALPPNLGSLSNLAYLYLSANKLTGTIPQALGNITTLVEIYLDTNRFEGGIPDKLWQLPNLTILALGQNMLSGDIPFNFSSLSLQLLSLEYNMFGKVLPQNISDMVPNLQILRLDYNMFQGQIPSSLGNALQLTEISMANNYFTGQIPSSFGKLSKLSYISLENNSLEASDGQGWEFLHALRNCSNLELLSLAQNQLQGEIPNSIGDLPLKLQQLVLSENKLSGEVPASIGNLQGLFRLSLDLNNLTGKIDEWVPKLTKLQKLLLHRNNFSGSIPSSIAELPRLSTLSLAYNAFDGPIPSSLGNLSGLQKLYLSHNNLEGVIPPELSYLKQLINLSLSENKLTGEIPGTLSQCKDLANIQMGNNFLTGNIPVTFGDLKSLGVLNLSHNSLSGTIPTTLNDLPVMSKLDLSYNRLQGKIPMTGIFANPTVVSVQGNIGLCGGVMDLRMPPCQVVSQRRKTQYYLIRVLIPIFGFMSLILVVYFLLLEKMKPREKYISSQSFGENFLKVSYNDLAQATRNFSEANLIGKGSYGTVYRGKLKECKLEVAVKVFDLEMRGAERSFISECEALRSIQHRNLLPIITACSTVDSTGNVFKALVYEYMPNGNLDTWIHDKEGGKAPGRLGLRQTISICVNIADALDYLHHECGRTTIHCDLKPSNILLADDMNALLGDFGIARFYIDSWSTSTGSNSTVGVKGTIGYIPPEYAGGGHPSTSGDVYSFGIVILELITGKRPTDPMFKDGLDIISFVESNFPHQIFQVIDARLAEKSMDSNQTNMTLENAVHQCLISLLQLALSCTRKLPSDRMNMKQIANKMHSIKTTYVGLEAKKYGPACNEQDA |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0615800 | OsNip_02t0615800-01 | Chr02 | 24350730 | 24354469 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGCCTCACGTGTGATACACAAACTGCAAAACTGGCCATTATACTACTAGCATTCATACTGCTATGTCATGGGATTGGCAACGTCGATTGCCGTGGGAACAGAGCCGATCAGCTCTCACTGCTTGATTTCAAGAAGGGCATCACCAACGATCCATATGGAGCCTTGGCCACTTGGAACACCAGCACACATTTCTGTAGGTGGCAAGGTGTCAAGTGCACCTCCACTGGGCCATGGCGCGTCATGGCGCTCAATCTCTCCAGCCAAAGTTTGACAGGCCAAATAAGGTCCTCTCTCGGAAACCTATCCTTCCTTAATATACTTGACCTCGGCGATAATAACTTACTTGGCTCCTTACCTCGCCTTGGCAATCTTAAGCAACTTCAGGCACTCTATCTGTATAAAAACAATTTGACAGGGATAATTCCTGATGAACTTACAAATTGTTCCAGCTTAACGTACATAGACCTCTCAGGAAATGCCCTAACTGGTGCACTTCCTCCAAATTTAGGCTCTCTGTCCAATCTAGCTTATCTTTATCTTTCTGCGAACAAGCTAACTGGAACCATCCCGCAGGCCCTTGGCAACATCACCACCTTGGTAGAAATCTATCTTGATACAAATCGATTCGAAGGGGGCATTCCAGACAAGCTTTGGCAATTGCCGAACTTGACAATTTTGGCCCTAGGTCAAAACATGCTATCGGGTGATATCCCATTTAACTTCTCCAGCCTTTCTCTTCAACTTTTAAGCTTGGAATACAATATGTTCGGCAAGGTATTGCCACAAAACATTAGTGATATGGTACCTAATCTCCAAATTCTTCGCTTGGATTACAATATGTTCCAAGGTCAAATCCCATCTTCTCTAGGAAATGCTTTGCAGCTAACAGAAATAAGTATGGCAAACAACTACTTCACCGGGCAAATTCCTAGCTCTTTCGGAAAGCTTTCTAAACTCTCCTATATTAGTCTCGAAAATAATAGCCTAGAGGCTTCTGATGGCCAAGGCTGGGAGTTCCTACACGCGTTGAGAAACTGTAGTAATCTAGAACTGTTGTCACTGGCTCAAAATCAGCTACAAGGAGAAATACCGAATTCAATTGGGGACCTTCCGCTCAAACTTCAACAGCTAGTGCTGAGTGAAAATAAGCTATCAGGAGAAGTTCCAGCAAGCATAGGAAACCTTCAGGGCCTGTTTAGGTTAAGTCTAGATTTGAACAATCTTACTGGCAAAATAGATGAGTGGGTTCCAAAGCTTACAAAACTGCAAAAATTACTTCTCCACAGGAACAACTTTAGCGGGTCGATTCCATCGTCTATAGCAGAGCTTCCTCGTTTGTCAACGCTTTCACTAGCATATAATGCATTTGATGGTCCCATACCATCCTCATTGGGAAACCTTTCAGGACTCCAGAAGTTATATCTAAGTCATAATAATCTCGAAGGTGTCATACCTCCAGAGCTTAGTTACCTTAAACAACTAATAAATCTAAGTTTATCAGAAAACAAGCTTACTGGGGAGATCCCTGGCACTTTGAGCCAGTGTAAAGACCTGGCAAACATCCAAATGGGCAATAACTTCCTTACTGGCAATATCCCAGTAACTTTTGGCGACCTAAAGAGCCTGGGCGTACTCAATCTTTCCCATAACAGCTTGTCGGGCACAATTCCGACTACACTAAATGATCTACCAGTCATGAGCAAACTGGACCTTTCATACAATCGTCTCCAAGGAAAAATACCAATGACTGGAATATTTGCAAATCCTACTGTTGTTTCGGTCCAGGGAAACATAGGACTATGTGGAGGAGTGATGGATCTCCGTATGCCCCCATGCCAAGTTGTTTCCCAGAGAAGAAAAACACAGTACTATTTGATTAGAGTATTGATCCCTATATTTGGCTTCATGTCACTCATATTAGTGGTCTACTTCTTACTTCTTGAGAAGATGAAGCCAAGAGAAAAATATATATCCTCGCAATCTTTTGGTGAGAATTTCCTTAAAGTCTCATATAATGATCTAGCTCAAGCCACAAGAAACTTCTCGGAGGCTAACCTTATTGGCAAAGGAAGCTATGGTACGGTGTACAGAGGTAAGTTGAAGGAATGTAAGTTGGAAGTAGCCGTGAAGGTTTTTGACCTTGAGATGCGAGGTGCCGAAAGAAGCTTCATATCGGAATGTGAAGCTCTCAGAAGCATTCAACATAGAAATCTTCTTCCAATCATAACTGCATGCTCGACCGTGGACAGTACGGGCAACGTTTTCAAAGCTTTAGTTTACGAGTACATGCCTAATGGCAACTTGGACACTTGGATACATGACAAAGAGGGTGGGAAAGCTCCCGGACGTTTGGGTTTAAGACAAACAATTAGCATATGTGTTAACATAGCCGATGCACTGGACTATTTACACCATGAATGCGGAAGAACAACTATCCATTGTGATTTGAAACCCAGCAATATACTTTTAGCTGATGACATGAATGCTCTTTTGGGAGATTTTGGCATTGCAAGATTTTATATCGACTCTTGGTCGACATCAACAGGTTCGAATAGTACAGTCGGTGTTAAGGGTACCATAGGGTATATTCCTCCAGAGTACGCGGGAGGTGGTCATCCATCTACTTCTGGGGATGTTTATAGTTTCGGGATAGTGATCCTGGAGCTTATAACAGGAAAAAGACCGACTGATCCTATGTTCAAAGACGGACTCGACATTATCAGCTTTGTCGAGAGTAACTTTCCACACCAGATATTTCAAGTGATTGATGCTCGACTCGCAGAAAAGTCCATGGACTCCAATCAAACAAATATGACACTGGAAAATGCTGTCCACCAGTGCTTGATATCTCTGCTACAACTTGCGCTTTCTTGTACGCGCAAATTACCAAGTGATCGCATGAACATGAAACAAATAGCCAACAAGATGCATTCAATCAAGACGACATATGTTGGATTGGAAGCTAAGAAATATGGTCCGGCATGTAATGAACAAGATGCATGA
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| Protein seq | MGLTCDTQTAKLAIILLAFILLCHGIGNVDCRGNRADQLSLLDFKKGITNDPYGALATWNTSTHFCRWQGVKCTSTGPWRVMALNLSSQSLTGQIRSSLGNLSFLNILDLGDNNLLGSLPRLGNLKQLQALYLYKNNLTGIIPDELTNCSSLTYIDLSGNALTGALPPNLGSLSNLAYLYLSANKLTGTIPQALGNITTLVEIYLDTNRFEGGIPDKLWQLPNLTILALGQNMLSGDIPFNFSSLSLQLLSLEYNMFGKVLPQNISDMVPNLQILRLDYNMFQGQIPSSLGNALQLTEISMANNYFTGQIPSSFGKLSKLSYISLENNSLEASDGQGWEFLHALRNCSNLELLSLAQNQLQGEIPNSIGDLPLKLQQLVLSENKLSGEVPASIGNLQGLFRLSLDLNNLTGKIDEWVPKLTKLQKLLLHRNNFSGSIPSSIAELPRLSTLSLAYNAFDGPIPSSLGNLSGLQKLYLSHNNLEGVIPPELSYLKQLINLSLSENKLTGEIPGTLSQCKDLANIQMGNNFLTGNIPVTFGDLKSLGVLNLSHNSLSGTIPTTLNDLPVMSKLDLSYNRLQGKIPMTGIFANPTVVSVQGNIGLCGGVMDLRMPPCQVVSQRRKTQYYLIRVLIPIFGFMSLILVVYFLLLEKMKPREKYISSQSFGENFLKVSYNDLAQATRNFSEANLIGKGSYGTVYRGKLKECKLEVAVKVFDLEMRGAERSFISECEALRSIQHRNLLPIITACSTVDSTGNVFKALVYEYMPNGNLDTWIHDKEGGKAPGRLGLRQTISICVNIADALDYLHHECGRTTIHCDLKPSNILLADDMNALLGDFGIARFYIDSWSTSTGSNSTVGVKGTIGYIPPEYAGGGHPSTSGDVYSFGIVILELITGKRPTDPMFKDGLDIISFVESNFPHQIFQVIDARLAEKSMDSNQTNMTLENAVHQCLISLLQLALSCTRKLPSDRMNMKQIANKMHSIKTTYVGLEAKKYGPACNEQDA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0615800 | OsNip_02t0615800-02 | Chr02 | 24352187 | 24354486 | + | RAP2018-11-26 | ||
| CDS seq | GTGCTGAGTGAAAATAAGCTATCAGGAGAAGTTCCAGCAAGCATAGGAAACCTTCAGGGCCTGTTTAGGTTAAGTCTAGATTTGAACAATCTTACTGGCAAAATAGATGAGTGGGTTCCAAAGCTTACAAAACTGCAAAAATTACTTCTCCACAGGAACAACTTTAGCGGGTCGATTCCATCGTCTATAGCAGAGCTTCCTCGTTTGTCAACGCTTTCACTAGCATATAATGCATTTGATGGTCCCATACCATCCTCATTGGGAAACCTTTCAGGACTCCAGAAGTTATATCTAAGTCATAATAATCTCGAAGGTGTCATACCTCCAGAGCTTAGTTACCTTAAACAACTAATAAATCTAAGTTTATCAGAAAACAAGCTTACTGGGGAGATCCCTGGCACTTTGAGCCAGTGTAAAGACCTGGCAAACATCCAAATGGGCAATAACTTCCTTACTGGCAATATCCCAGTAACTTTTGGCGACCTAAAGAGCCTGGGCGTACTCAATCTTTCCCATAACAGCTTGTCGGGCACAATTCCGACTACACTAAATGATCTACCAGTCATGAGCAAACTGGACCTTTCATACAATCGTCTCCAAGGAAAAATACCAATGACTGGAATATTTGCAAATCCTACTGTTGTTTCGGTCCAGGGAAACATAGGACTATGTGGAGGAGTGATGGATCTCCGTATGCCCCCATGCCAAGTTGTTTCCCAGAGAAGAAAAACACAGTACTATTTGATTAGAGTATTGATCCCTATATTTGGCTTCATGTCACTCATATTAGTGGTCTACTTCTTACTTCTTGAGAAGATGAAGCCAAGAGAAAAATATATATCCTCGCAATCTTTTGGTGAGAATTTCCTTAAAGTCTCATATAATGATCTAGCTCAAGCCACAAGAAACTTCTCGGAGGCTAACCTTATTGGCAAAGGAAGCTATGGTACGGTGTACAGAGGTAAGTTGAAGGAATGTAAGTTGGAAGTAGCCGTGAAGGTTTTTGACCTTGAGATGCGAGGTGCCGAAAGAAGCTTCATATCGGAATGTGAAGCTCTCAGAAGCATTCAACATAGAAATCTTCTTCCAATCATAACTGCATGCTCGACCGTGGACAGTACGGGCAACGTTTTCAAAGCTTTAGTTTACGAGTACATGCCTAATGGCAACTTGGACACTTGGATACATGACAAAGAGGGTGGGAAAGCTCCCGGACGTTTGGGTTTAAGACAAACAATTAGCATATGTGTTAACATAGCCGATGCACTGGACTATTTACACCATGAATGCGGAAGAACAACTATCCATTGTGATTTGAAACCCAGCAATATACTTTTAGCTGATGACATGAATGCTCTTTTGGGAGATTTTGGCATTGCAAGATTTTATATCGACTCTTGGTCGACATCAACAGGTTCGAATAGTACAGTCGGTGTTAAGGGTACCATAGGGTATATTCCTCCAGAGTACGCGGGAGGTGGTCATCCATCTACTTCTGGGGATGTTTATAGTTTCGGGATAGTGATCCTGGAGCTTATAACAGGAAAAAGACCGACTGATCCTATGTTCAAAGACGGACTCGACATTATCAGCTTTGTCGAGAGTAACTTTCCACACCAGATATTTCAAGTGATTGATGCTCGACTCGCAGAAAAGTCCATGGACTCCAATCAAACAAATATGACACTGGAAAATGCTGTCCACCAGTGCTTGATATCTCTGCTACAACTTGCGCTTTCTTGTACGCGCAAATTACCAAGTGATCGCATGAACATGAAACAAATAGCCAACAAGATGCATTCAATCAAGACGACATATGTTGGATTGGAAGCTAAGAAATATGGTCCGGCATGTAATGAACAAGATGCATGA
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| Protein seq | VLSENKLSGEVPASIGNLQGLFRLSLDLNNLTGKIDEWVPKLTKLQKLLLHRNNFSGSIPSSIAELPRLSTLSLAYNAFDGPIPSSLGNLSGLQKLYLSHNNLEGVIPPELSYLKQLINLSLSENKLTGEIPGTLSQCKDLANIQMGNNFLTGNIPVTFGDLKSLGVLNLSHNSLSGTIPTTLNDLPVMSKLDLSYNRLQGKIPMTGIFANPTVVSVQGNIGLCGGVMDLRMPPCQVVSQRRKTQYYLIRVLIPIFGFMSLILVVYFLLLEKMKPREKYISSQSFGENFLKVSYNDLAQATRNFSEANLIGKGSYGTVYRGKLKECKLEVAVKVFDLEMRGAERSFISECEALRSIQHRNLLPIITACSTVDSTGNVFKALVYEYMPNGNLDTWIHDKEGGKAPGRLGLRQTISICVNIADALDYLHHECGRTTIHCDLKPSNILLADDMNALLGDFGIARFYIDSWSTSTGSNSTVGVKGTIGYIPPEYAGGGHPSTSGDVYSFGIVILELITGKRPTDPMFKDGLDIISFVESNFPHQIFQVIDARLAEKSMDSNQTNMTLENAVHQCLISLLQLALSCTRKLPSDRMNMKQIANKMHSIKTTYVGLEAKKYGPACNEQDA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0615800 | OsNip_02t0615800-03 | Chr02 | 24350732 | 24354488 | + | IsoSeq | ||
| CDS seq | ATGGGATTGGCAACGTCGATTGCCGTGGGAACAGAGCCGATCAGCTCTCACTGCTTGATTTCAAGAAGGGCATCACCAACGATCCATATGGAGCCTTGGCCACTTGGAACACCAGCACACATTTCTGTAGGTGGCAAGGTGTCAAGTGCACCTCCACTGGGCCATGGCGCGTCATGGCGCTCAATCTCTCCAGCCAAA |
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| Protein seq | MGLATSIAVGTEPISSHCLISRRASPTIHMEPWPLGTPAHISVGGKVSSAPPLGHGASWRSISPAK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 24350817 | 24351048 | + | OsNip_02t0615800-01 | OsNip_02t0615800-03,OsNip_02t0615800-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 47.578331 | 42.379108 | 23.843420 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0487200 | SBH | 4.334906 | 5.391147 | 4.135722 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40240 | RBH | 43.565369 | 39.550552 | 4.059873 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | SBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | SBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025050 | SBH | 0.778974 | 0.000000 | 0.521185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024690 | RBH | 3.492460 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024610 | SBH | 1.116083 | 0.985470 | 3.219374 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0397100 | SBH | 46.5454025 | 0.6193295 | 0.078797 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024640 | SBH | 10.593510 | 0.0 | 1.567050 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0426100 | SBH | 95.3048785 | 1.584648 | 0.149159 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024850 | RBH | 25.960310 | 0.035675 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024660 | RBH | 4.461609 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024950 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024430 | RBH | 7.177341 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024890 | SBH | 0.206270 | 0.000000 | 0.311611 |
