Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_02g0024430 | OGI:02001240 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr02:25210282-25214752 | ||||||||
| Gene Symbol | LP2, OsLP2 | ||||||||||
| DNA seq | gttcttaaaccctctggcgcctcatccagctgagcatccaacattccaactcgaaagtatatccaccacctggcAaacttgagcagacacggctcctgttttatgtgcttcggccgaacaaaggtgagctattatatgatttgctggttagactttggttctgttcttttcttattaagatacatattcgagtaaagtccatcatcgatctttaaacttataccgttgtgtcatcccggtccgtaaactcacaaatcgactgttcaggtcctcaaatttgttcgactgtgtcattccgatatctaaacttacagatcactcgtttaggttctccaacttgttcagttgtgtcaccccggtccttaaagagcacagtctaaaaactttatatAaaaaataattcataactttttcatgtgaactttaatgaaaacAaactttatatcaaaattgtagccctcgacgcgacctacaactttgtagttgaaaagtttttgaattaaaactgtttagggtcccaaaatattgttgcatgtttatatattttgaaattttaattttaaaattacattttgggacaaaaaaatgacttaaaatagAaaaaattcaactacaaagttgtagatcgcgtcgagggctacaagTttgatataaaatttgtcttcattagagttcacgtaaaaaagttatgaattaTttttaaatataaagtctttagatcgtcctatttgacccagatgatatttaaatccaagtttagggacgggggtgacacaactgaacaaattggaggacctaaacgagtgatctacaagtttagagaccgggatgacacaatcgaataagtttgaggacctgaacggtcgatttgcgagtttagggaccgagatgacacaacggtacaagtttagagaccggtaatggactttactctacatattttatctcggtttttgttagtatgctttttattttcatcagtttcaaacatcacttttagcatagAagctcttgcttcgtgccatcagatgcttgccgtttttactgttcaggtgtactgtgcgcatgtgacaaaaattattcacaccgttgtgctttaaattacagtggttatttctttcatttgttcaagcgttacgttccgtggaattctaagtttgccatagttagagagtgcatttcgttgcacgaagtaggtccattcggcggtgatcatagtaggtaacaatctttattctttcattttgaactttgcaggaaaagtcacctatgtcgaccaatcatccggtgaaactcactgtgcttatgctagtagcattgctattgttgtcttgtggagttggcagcatccgttgctcaacggtcactgataacagcacagatttgttatcgttatttgatttcaagcaggccatcaatgatccaacgggagcactaaacggttggagcacggacgttccccattgccagtggatgggcgtcaactgcagccggaggcacgccggtcgagtcaccgcacttaacctccccgacaaaggattgtcaggcacaatacccgcctcagtcgcaaacctgacttttgttcgtagacttgatctgtccaataataacttctccggccagatgcctgatcttagcactctccagaagatgcaagtccttaatctgagctacaattcgttagatggcattatcccagacacactcaccaattgttccaacctgaaggaattacatctctataataacttcctaactcgtatcccttcacaaacaggtctccttactaatctagtttatatggccatttccaataataacctctccggcatcattccgccaacccttggcaacatgagctctctggtaacactttatctaggagtaaataatcttggaggaagcatccccgatgaaattgggaaacttcccaatatcaaaaccatcagcctagcggaaaatgttatcaggtagtataccaggaagcatttctaatttatcttctattcaaacactagatttccgtgcaaatcttctcaacgagacattaccgataaacatgggtgatcgtctccataatctccaatacctctacttgggcagcaacatgctcgaaggccacatcccagcttccttgagtaatgcttcaatgctagaagcaatatatttagtgaataacagtttcactggccaaattcctactacatttggaaagcttttaaggctatctgttttatcccttcagataaacaggcttgaagcgaacgatagtgaaggctgggaattcttgcaggggttaggacaatgtcgcaatctaacaaaactagcattagctggaaatcagctacagggagtaataccacattcgattggtaacctatcgaacagtctccaatatctaatttttggaggaaataagctgtctggtatagttccaccgagcctagggaacctatctggattgactctgctgacactagatacgaacagcctcactggtgacatcggccattggattggaaacctgaaacacctacaatcattatatctgaggaataacAaattcacggggcccattccaccctctattagcaatatttcagggttgctatatctatatttacaaaacaacagttttgaagccagcataccaccgagcttaggaaaactcggaggactcttggacttggatcttagtcataataatcttgaaggcagcatacctctcgaaattggtaaccttacggaactcgtcaacatatttctttcatcgaacaggcttactggggacattcctagtactttggaacgatgccaatccttagcacgaatccgaatggaccaaaacttgctcacaggaagcattccagcattcttgggcaacattacgagcttgtcaatgctcaatctttcaaataacaacttgtcaggcaacatccctagaactctaggtgatttaccactgcttgttgagctggatctttcacacaatcacctccaaggggaaatcccaacaaatgggattttcaaaaatgctactgcggtttcactcgaagacaactggggcctttgcggtggtgtaattgatccccatacgccctcgtgccccagcgcatctcaaaaattcagtagacagtattacttggtcagaatattaatcccaatatttggcttcatgtcacttgttctgctagtctacgttttattcctagtaaagaaggtgccaagaagagaccatttacagtcatcttttggcgagtatttcctcaaagtttcctacaacgatctagctcaagccacaaaaaatttctctgaatctagccttattgggagaggaagctacggttcagtgtacaaagggaggctaaaggagcagaaagtagaagtggccgtgaaggttttcaaccttgagatgcgaggtgcggagagaagcttcattgcagagtgtgaagcactgagaagcattcAacacagaaatcttcttcccataataactgcatgttcgacggttgacaatacaggcaacgttttcaaagctctagtttatgaatttatgcctaatggaaacctagatacatggctacatcacaaagaagatggtaacaaagattcaaaactcttaggcctaaatcaaagaataagtatagctgttaacatagctgatgcattggactatttgcaccacgattgcggaagacccaccgttcattgtgatttgaagcctagcaacatcctcctcgatgaagacatgaatgcgcttttgggagactttggcattgcaaggttttatgctgattcacgcttgatatcgccaggttcagttagttcaattggcgtgaaGgggactattggatatattgctccaggtattgttgtggtgtaatttatttaacacaaccattcaaccaagtctttactacacacgactaacctgcacatctaccaattttcagagtatgcacaaGgtggacatgcagaaattgccggggatgtctatagtttcgggatagtactgttagagatggtgacaggtaaaagaccgacagaccctatgtttaatgacggtctcgacattgtcaagtttgtgggagaaaactttccacatcaaatagaccatgtcatcgatgatcatctcaaacaagagtacagggagtttgagcaggcaaacattgtaacagagaatgtggtggcgtctttgctacaagtagcactttcctgtgcgcatcccttaccaagtaggcgAatgagtatgaaagttgctgccaacaaaatacatgcaatcAagacgtccagtctaggatgggaatccaagtagacaaagtgtgtttcgatagagtgatatggtcgatcgcctattactatgactgcttccaaatcccatatattgggggttgtgtgtctctctatgtagttgttgattttttgagtggtaaatataaggagtaaatattgtcgtaatgtgttgtaaaat
More
|
||||||||||
| CDS seq | atgttatcaggtagtataccaggaagcatttctaatttatcttctattcaaacactagatttccgtgcaaatcttctcaacgagacattaccgataaacatgggtgatcgtctccataatctccaatacctctacttgggcagcaacatgctcgaaggccacatcccagcttccttgagtaatgcttcaatgctagaagcaatatatttagtgaataacagtttcactggccaaattcctactacatttggaaagcttttaaggctatctgttttatcccttcagataaacaggcttgaagcgaacgatagtgaaggctgggaattcttgcaggggttaggacaatgtcgcaatctaacaaaactagcattagctggaaatcagctacagggagtaataccacattcgattggtaacctatcgaacagtctccaatatctaatttttggaggaaataagctgtctggtatagttccaccgagcctagggaacctatctggattgactctgctgacactagatacgaacagcctcactggtgacatcggccattggattggaaacctgaaacacctacaatcattatatctgaggaataacAaattcacggggcccattccaccctctattagcaatatttcagggttgctatatctatatttacaaaacaacagttttgaagccagcataccaccgagcttaggaaaactcggaggactcttggacttggatcttagtcataataatcttgaaggcagcatacctctcgaaattggtaaccttacggaactcgtcaacatatttctttcatcgaacaggcttactggggacattcctagtactttggaacgatgccaatccttagcacgaatccgaatggaccaaaacttgctcacaggaagcattccagcattcttgggcaacattacgagcttgtcaatgctcaatctttcaaataacaacttgtcaggcaacatccctagaactctaggtgatttaccactgcttgttgagctggatctttcacacaatcacctccaaggggaaatcccaacaaatgggattttcaaaaatgctactgcggtttcactcgaagacaactggggcctttgcggtggtgtaattgatccccatacgccctcgtgccccagcgcatctcaaaaattcagtagacagtattacttggtcagaatattaatcccaatatttggcttcatgtcacttgttctgctagtctacgttttattcctagtaaagaaggtgccaagaagagaccatttacagtcatcttttggcgagtatttcctcaaagtttcctacaacgatctagctcaagccacaaaaaatttctctgaatctagccttattgggagaggaagctacggttcagtgtacaaagggaggctaaaggagcagaaagtagaagtggccgtgaaggttttcaaccttgagatgcgaggtgcggagagaagcttcattgcagagtgtgaagcactgagaagcattcAacacagaaatcttcttcccataataactgcatgttcgacggttgacaatacaggcaacgttttcaaagctctagtttatgaatttatgcctaatggaaacctagatacatggctacatcacaaagaagatggtaacaaagattcaaaactcttaggcctaaatcaaagaataagtatagctgttaacatagctgatgcattggactatttgcaccacgattgcggaagacccaccgttcattgtgatttgaagcctagcaacatcctcctcgatgaagacatgaatgcgcttttgggagactttggcattgcaaggttttatgctgattcacgcttgatatcgccaggttcagttagttcaattggcgtgaaGgggactattggatatattgctccagagtatgcacaaGgtggacatgcagaaattgccggggatgtctatagtttcgggatagtactgttagagatggtgacaggtaaaagaccgacagaccctatgtttaatgacggtctcgacattgtcaagtttgtgggagaaaactttccacatcaaatagaccatgtcatcgatgatcatctcaaacaagagtacagggagtttgagcaggcaaacattgtaacagagaatgtggtggcgtctttgctacaagtagcactttcctgtgcgcatcccttaccaagtaggcgAatgagtatgaaagttgctgccaacaaaatacatgcaatcAagacgtccagtctaggatgggaatccaagtag
More
|
||||||||||
| Protein seq | MLSGSIPGSISNLSSIQTLDFRANLLNETLPINMGDRLHNLQYLYLGSNMLEGHIPASLSNASMLEAIYLVNNSFTGQIPTTFGKLLRLSVLSLQINRLEANDSEGWEFLQGLGQCRNLTKLALAGNQLQGVIPHSIGNLSNSLQYLIFGGNKLSGIVPPSLGNLSGLTLLTLDTNSLTGDIGHWIGNLKHLQSLYLRNNKFTGPIPPSISNISGLLYLYLQNNSFEASIPPSLGKLGGLLDLDLSHNNLEGSIPLEIGNLTELVNIFLSSNRLTGDIPSTLERCQSLARIRMDQNLLTGSIPAFLGNITSLSMLNLSNNNLSGNIPRTLGDLPLLVELDLSHNHLQGEIPTNGIFKNATAVSLEDNWGLCGGVIDPHTPSCPSASQKFSRQYYLVRILIPIFGFMSLVLLVYVLFLVKKVPRRDHLQSSFGEYFLKVSYNDLAQATKNFSESSLIGRGSYGSVYKGRLKEQKVEVAVKVFNLEMRGAERSFIAECEALRSIQHRNLLPIITACSTVDNTGNVFKALVYEFMPNGNLDTWLHHKEDGNKDSKLLGLNQRISIAVNIADALDYLHHDCGRPTVHCDLKPSNILLDEDMNALLGDFGIARFYADSRLISPGSVSSIGVKGTIGYIAPEYAQGGHAEIAGDVYSFGIVLLEMVTGKRPTDPMFNDGLDIVKFVGENFPHQIDHVIDDHLKQEYREFEQANIVTENVVASLLQVALSCAHPLPSRRMSMKVAANKIHAIKTSSLGWESK |
||||||||||
| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0024430 | OsLaMu_02g0024430.02 | Chr02 | 25211305 | 25214752 | + | NAM | ||
| CDS seq | atgttatcaggtagtataccaggaagcatttctaatttatcttctattcaaacactagatttccgtgcaaatcttctcaacgagacattaccgataaacatgggtgatcgtctccataatctccaatacctctacttgggcagcaacatgctcgaaggccacatcccagcttccttgagtaatgcttcaatgctagaagcaatatatttagtgaataacagtttcactggccaaattcctactacatttggaaagcttttaaggctatctgttttatcccttcagataaacaggcttgaagcgaacgatagtgaaggctgggaattcttgcaggggttaggacaatgtcgcaatctaacaaaactagcattagctggaaatcagctacagggagtaataccacattcgattggtaacctatcgaacagtctccaatatctaatttttggaggaaataagctgtctggtatagttccaccgagcctagggaacctatctggattgactctgctgacactagatacgaacagcctcactggtgacatcggccattggattggaaacctgaaacacctacaatcattatatctgaggaataacAaattcacggggcccattccaccctctattagcaatatttcagggttgctatatctatatttacaaaacaacagttttgaagccagcataccaccgagcttaggaaaactcggaggactcttggacttggatcttagtcataataatcttgaaggcagcatacctctcgaaattggtaaccttacggaactcgtcaacatatttctttcatcgaacaggcttactggggacattcctagtactttggaacgatgccaatccttagcacgaatccgaatggaccaaaacttgctcacaggaagcattccagcattcttgggcaacattacgagcttgtcaatgctcaatctttcaaataacaacttgtcaggcaacatccctagaactctaggtgatttaccactgcttgttgagctggatctttcacacaatcacctccaaggggaaatcccaacaaatgggattttcaaaaatgctactgcggtttcactcgaagacaactggggcctttgcggtggtgtaattgatccccatacgccctcgtgccccagcgcatctcaaaaattcagtagacagtattacttggtcagaatattaatcccaatatttggcttcatgtcacttgttctgctagtctacgttttattcctagtaaagaaggtgccaagaagagaccatttacagtcatcttttggcgagtatttcctcaaagtttcctacaacgatctagctcaagccacaaaaaatttctctgaatctagccttattgggagaggaagctacggttcagtgtacaaagggaggctaaaggagcagaaagtagaagtggccgtgaaggttttcaaccttgagatgcgaggtgcggagagaagcttcattgcagagtgtgaagcactgagaagcattcAacacagaaatcttcttcccataataactgcatgttcgacggttgacaatacaggcaacgttttcaaagctctagtttatgaatttatgcctaatggaaacctagatacatggctacatcacaaagaagatggtaacaaagattcaaaactcttaggcctaaatcaaagaataagtatagctgttaacatagctgatgcattggactatttgcaccacgattgcggaagacccaccgttcattgtgatttgaagcctagcaacatcctcctcgatgaagacatgaatgcgcttttgggagactttggcattgcaaggttttatgctgattcacgcttgatatcgccaggttcagttagttcaattggcgtgaaGgggactattggatatattgctccagagtatgcacaaGgtggacatgcagaaattgccggggatgtctatagtttcgggatagtactgttagagatggtgacaggtaaaagaccgacagaccctatgtttaatgacggtctcgacattgtcaagtttgtgggagaaaactttccacatcaaatagaccatgtcatcgatgatcatctcaaacaagagtacagggagtttgagcaggcaaacattgtaacagagaatgtggtggcgtctttgctacaagtagcactttcctgtgcgcatcccttaccaagtaggcgAatgagtatgaaagttgctgccaacaaaatacatgcaatcAagacgtccagtctaggatgggaatccaagtag
More
|
|||||||
| Protein seq | MLSGSIPGSISNLSSIQTLDFRANLLNETLPINMGDRLHNLQYLYLGSNMLEGHIPASLSNASMLEAIYLVNNSFTGQIPTTFGKLLRLSVLSLQINRLEANDSEGWEFLQGLGQCRNLTKLALAGNQLQGVIPHSIGNLSNSLQYLIFGGNKLSGIVPPSLGNLSGLTLLTLDTNSLTGDIGHWIGNLKHLQSLYLRNNKFTGPIPPSISNISGLLYLYLQNNSFEASIPPSLGKLGGLLDLDLSHNNLEGSIPLEIGNLTELVNIFLSSNRLTGDIPSTLERCQSLARIRMDQNLLTGSIPAFLGNITSLSMLNLSNNNLSGNIPRTLGDLPLLVELDLSHNHLQGEIPTNGIFKNATAVSLEDNWGLCGGVIDPHTPSCPSASQKFSRQYYLVRILIPIFGFMSLVLLVYVLFLVKKVPRRDHLQSSFGEYFLKVSYNDLAQATKNFSESSLIGRGSYGSVYKGRLKEQKVEVAVKVFNLEMRGAERSFIAECEALRSIQHRNLLPIITACSTVDNTGNVFKALVYEFMPNGNLDTWLHHKEDGNKDSKLLGLNQRISIAVNIADALDYLHHDCGRPTVHCDLKPSNILLDEDMNALLGDFGIARFYADSRLISPGSVSSIGVKGTIGYIAPEYAQGGHAEIAGDVYSFGIVLLEMVTGKRPTDPMFNDGLDIVKFVGENFPHQIDHVIDDHLKQEYREFEQANIVTENVVASLLQVALSCAHPLPSRRMSMKVAANKIHAIKTSSLGWESK
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0024430 | OsLaMu_02g0024430.01 | Chr02 | 25210282 | 25214752 | + | NAM | ||
| CDS seq | atgtgcttcggccgaacaaaggaaaagtcacctatgtcgaccaatcatccggtgaaactcactgtgcttatgctagtagcattgctattgttgtcttgtggagttggcagcatccgttgctcaacggtcactgataacagcacagatttgttatcgttatttgatttcaagcaggccatcaatgatccaacgggagcactaaacggttggagcacggacgttccccattgccagtggatgggcgtcaactgcagccggaggcacgccggtcgagtcaccgcacttaacctccccgacaaaggattgtcaggcacaatacccgcctcagtcgcaaacctgacttttgttcgtagacttgatctgtccaataataacttctccggccagatgcctgatcttagcactctccagaagatgcaagtccttaatctgagctacaattcgttagatggcattatcccagacacactcaccaattgttccaacctgaaggaattacatctctataataacttcctaactcgtatcccttcacaaacaggtctccttactaatctagtttatatggccatttccaataataacctctccggcatcattccgccaacccttggcaacatgagctctctggtaacactttatctaggagtaaataatcttggaggaagcatccccgatgaaattgggaaacttcccaatatcaaaaccatcagcctagcggaaaatgttatcaggtag
More
|
|||||||
| Protein seq | MCFGRTKEKSPMSTNHPVKLTVLMLVALLLLSCGVGSIRCSTVTDNSTDLLSLFDFKQAINDPTGALNGWSTDVPHCQWMGVNCSRRHAGRVTALNLPDKGLSGTIPASVANLTFVRRLDLSNNNFSGQMPDLSTLQKMQVLNLSYNSLDGIIPDTLTNCSNLKELHLYNNFLTRIPSQTGLLTNLVYMAISNNNLSGIIPPTLGNMSSLVTLYLGVNNLGGSIPDEIGKLPNIKTISLAENVIR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_02g0024430 | OsLaMu_02g0024430.03 | Chr02 | 25210314 | 25211402 | + | IsoSeq | ||
| CDS seq | gcatccaacattccaactcgaaagtatatccaccacctggcAaacttgagcagacacggctcctgttttatgtgcttcggccgaacaaagtttagggacgggggtgacacaactgaacaaattggaggacctaaacgagtgatctacaagtttagagaccgggatgacacaatc |
|||||||
| Protein seq | ASNIPTRKYIHHLANLSRHGSCFMCFGRTKFRDGGDTTEQIGGPKRVIYKFRDRDDTI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AL | Chr02 | 25210404 | 25214752 | + | OsLaMu_02g0024430.03 | OsLaMu_02g0024430.03,OsLaMu_02g0024430.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.177341 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0615800 | RBH | 47.578331 | 42.379108 | 23.843420 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40240 | RBH | 43.565369 | 39.550552 | 4.059873 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | SBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | RBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025050 | RBH | 0.778974 | 0.000000 | 0.521185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024690 | RBH | 3.492460 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024610 | SBH | 1.116083 | 0.985470 | 3.219374 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0396200 | RBH | 0.414616 | 0.170244 | 0.1532725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024620 | SBH | 0.032811 | 0.0 | 0.078690 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0425400 | SBH | 1.672875 | 0.3362355 | 3.077142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008750 | SBH | 0.030803 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024660 | RBH | 4.461609 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019440 | SBH | 0.082115 | 8.156088 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024740 | SBH | 0.0 | 0.0 | 1.133679 |
