Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g40130 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:24293135-24293959 | ||||||||
| Gene Symbol | OsGIRL1, OsGIRL1-1, OsGIRL1-2, OsGIRL1-3, - | ||||||||||
| DNA seq | ATGGTTGTTCCATCGGCATTGCTGCTGCCGCTGCCGCTGCTATTGCTGTGTTACGGATTTGGAAACATCCATTGCTCACCAGTTCATAGGAGCAGCATCGATCTCCACTCGCTGCTCGACTTCAAGCAGGGCATCTCTAGTGATCCAAATGAAGCCTTGAAGTCCTGGAACACCAGCACCCACTACTGTAAGTGGACGGGCGTCATGTGCACCCAAACGCGACCATGGCGCGTCTCAGGGCTTAACCTCACTGGTCTAAGCTTGGGTGGCCAAATTAGCTCCTCTCTCGGAAACCTGACCTTCCTTAATTATCTGGACCTCTCCTATAATAATTTCTTTGGCCCGTTGCCTCTTCTTAACCGGCTCCAACAACTGAAAAACCTTATCCTAGGAAGCAACAGTTTGCACGGGGCTATTCCAGTCTCACTTACAAATTCTTCCAGCTTGTCATACCTGGACCTCTCCACAAACCTTCTAGTTGGTGCGATTCCTGCGAACATAAGCTTACTTTCGAACCTAGAGTATTTGGATCTTGATCAGAACAATCTCACCGGGACCGTCCTGCAAACCATAGGAGACATTACGTCATTAGAAATACTTTATCTTTTTCAAAATCAACTAAGTGGAAGCATTCCCGATAAGATTTGGCAATTGCCGAATCTTATGCAATTGGTGCTCGGTGAAAATAATTTGTCAGGTGGAATACCACAAACCCTCCATAATATATCTTCTCTACAAAGATTAGGTTTGGAGTACAATATGCTAAGCAAAGCATTGCCACCTAACATTGGTGATGCCCTCTCCAATCTCGAAGTACTTGGGTAA
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| CDS seq | ATGGTTGTTCCATCGGCATTGCTGCTGCCGCTGCCGCTGCTATTGCTGTGTTACGGATTTGGAAACATCCATTGCTCACCAGTTCATAGGAGCAGCATCGATCTCCACTCGCTGCTCGACTTCAAGCAGGGCATCTCTAGTGATCCAAATGAAGCCTTGAAGTCCTGGAACACCAGCACCCACTACTGTAAGTGGACGGGCGTCATGTGCACCCAAACGCGACCATGGCGCGTCTCAGGGCTTAACCTCACTGGTCTAAGCTTGGGTGGCCAAATTAGCTCCTCTCTCGGAAACCTGACCTTCCTTAATTATCTGGACCTCTCCTATAATAATTTCTTTGGCCCGTTGCCTCTTCTTAACCGGCTCCAACAACTGAAAAACCTTATCCTAGGAAGCAACAGTTTGCACGGGGCTATTCCAGTCTCACTTACAAATTCTTCCAGCTTGTCATACCTGGACCTCTCCACAAACCTTCTAGTTGGTGCGATTCCTGCGAACATAAGCTTACTTTCGAACCTAGAGTATTTGGATCTTGATCAGAACAATCTCACCGGGACCGTCCTGCAAACCATAGGAGACATTACGTCATTAGAAATACTTTATCTTTTTCAAAATCAACTAAGTGGAAGCATTCCCGATAAGATTTGGCAATTGCCGAATCTTATGCAATTGGTGCTCGGTGAAAATAATTTGTCAGGTGGAATACCACAAACCCTCCATAATATATCTTCTCTACAAAGATTAGGTTTGGAGTACAATATGCTAAGCAAAGCATTGCCACCTAACATTGGTGATGCCCTCTCCAATCTCGAAGTACTTGGGTAA
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| Protein seq | MVVPSALLLPLPLLLLCYGFGNIHCSPVHRSSIDLHSLLDFKQGISSDPNEALKSWNTSTHYCKWTGVMCTQTRPWRVSGLNLTGLSLGGQISSSLGNLTFLNYLDLSYNNFFGPLPLLNRLQQLKNLILGSNSLHGAIPVSLTNSSSLSYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNLTGTVLQTIGDITSLEILYLFQNQLSGSIPDKIWQLPNLMQLVLGENNLSGGIPQTLHNISSLQRLGLEYNMLSKALPPNIGDALSNLEVLG |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g40130 | LOC_Os02g40130.1 | Chr02 | 24293135 | 24293959 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTTGTTCCATCGGCATTGCTGCTGCCGCTGCCGCTGCTATTGCTGTGTTACGGATTTGGAAACATCCATTGCTCACCAGTTCATAGGAGCAGCATCGATCTCCACTCGCTGCTCGACTTCAAGCAGGGCATCTCTAGTGATCCAAATGAAGCCTTGAAGTCCTGGAACACCAGCACCCACTACTGTAAGTGGACGGGCGTCATGTGCACCCAAACGCGACCATGGCGCGTCTCAGGGCTTAACCTCACTGGTCTAAGCTTGGGTGGCCAAATTAGCTCCTCTCTCGGAAACCTGACCTTCCTTAATTATCTGGACCTCTCCTATAATAATTTCTTTGGCCCGTTGCCTCTTCTTAACCGGCTCCAACAACTGAAAAACCTTATCCTAGGAAGCAACAGTTTGCACGGGGCTATTCCAGTCTCACTTACAAATTCTTCCAGCTTGTCATACCTGGACCTCTCCACAAACCTTCTAGTTGGTGCGATTCCTGCGAACATAAGCTTACTTTCGAACCTAGAGTATTTGGATCTTGATCAGAACAATCTCACCGGGACCGTCCTGCAAACCATAGGAGACATTACGTCATTAGAAATACTTTATCTTTTTCAAAATCAACTAAGTGGAAGCATTCCCGATAAGATTTGGCAATTGCCGAATCTTATGCAATTGGTGCTCGGTGAAAATAATTTGTCAGGTGGAATACCACAAACCCTCCATAATATATCTTCTCTACAAAGATTAGGTTTGGAGTACAATATGCTAAGCAAAGCATTGCCACCTAACATTGGTGATGCCCTCTCCAATCTCGAAGTACTTGGGTAA
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| Protein seq | MVVPSALLLPLPLLLLCYGFGNIHCSPVHRSSIDLHSLLDFKQGISSDPNEALKSWNTSTHYCKWTGVMCTQTRPWRVSGLNLTGLSLGGQISSSLGNLTFLNYLDLSYNNFFGPLPLLNRLQQLKNLILGSNSLHGAIPVSLTNSSSLSYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNLTGTVLQTIGDITSLEILYLFQNQLSGSIPDKIWQLPNLMQLVLGENNLSGGIPQTLHNISSLQRLGLEYNMLSKALPPNIGDALSNLEVLG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.573867 | 1.093673 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0614966 | RBH | 1.016674 | 1.391367 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42700 | SBH | 0.082613 | 0.168246 | 0.931966 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0614966 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025030 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | RBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025050 | SBH | 0.778974 | 0.000000 | 0.521185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020740 | SBH | 0.027518 | 0.028389 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024610 | SBH | 1.116083 | 0.985470 | 3.219374 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0397100 | RBH | 46.5454025 | 0.6193295 | 0.078797 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024420 | RBH | 0.025480 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0425400 | SBH | 1.672875 | 0.3362355 | 3.077142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024840 | RBH | 0.416905 | 0.027276 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020620 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021060 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020560 | SBH | 0.094109 | 0.146955 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025020 | RBH | 0.240422 | 0.0 | 0.434230 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024740 | SBH | 0.0 | 0.0 | 1.133679 |
