Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0004410 | OGI:02001240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:3109606-3111503 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaccaagatgcaggaacttcaacttctcctagtccttgctgctcttgtgctgctctccttcctctctcctgccacctcctgcacggagcaggagaagagctcactcctccagttcctccgcgagctctcgccggattccagcagcaagttctcccggtcatggcagagcggcacaagctgctgcacgtgggaaggcatcgcctgcggcagcaatggcacggtgacggagctctcgctgccgtccatggcgctcgagggccccatctctgtatcaattgccaacctcaccggcttgcgccgcctcgacctgtcgtacaattctctctccggcgagctcccaccggagttgatctcctccgccagcgtcgccttcctcgacgtcagcttcaaccgcctcaacggcgagctgcaggaatcttcatcatcactgcctcaccatcctcttcaggttctgaacatctcccacaatttcttcgccggggagtttccgtccacgatatgggagaagaagagtgatcttgtcgcgatcagcgcgagccacaacactttcagtggcgcgctgccgtcttctttctgcatcagctcgccatccttcgctgttcttgatctctcatacaacctcttcagtggcagcattccagctgagataggtaagtgctcttcactcagagtgctcaaggctagcaacaacgagatcaatggcagcttgccagatgagctctttgatgcttccatgttggagcacctctcttttctgaagaatggtttggaaggagagcttgatggtaaacagatagccaagctcaagaatatagtagttcttgatcttggatcgaacaatttcatcggcgatattccgggtagcataggtcagcttaagagattggaggagctccatttggactacaacaggatgtccggggaattgccatcagctctagggaactgtacaaatctcaagatcatcaacctcaagtacaacagcttcagaggagagcttctgaaggtgaacttctccggacttcccaatctgaaagttttggatcttgagtcaaacaagttcagtggagaaattccggaaagcgtctaccatgcagcaatctgacctcgctgaaactatcttcaaacaaattctatggacagttgtcaccaagaattggcaacctgaaatccctcttcttcctatcactttccaacaatgcttttgtgaatattgcaaatgtgattcatgcactcaagaactccaggaaaatcaacactttgatcataggaaccaacttcaagggtgagaccatgccagaggatataccaatcactgatggttttcagagtcttcaggttctttccataccatcttgctcattgtctggaaaaattcctctttggctatcaaaattggccaagctggaagttctggatctgtccaacaatcaactcactggaccaataccagactggatccatgacctgaacttcctctacttcatagatatatcaaacaacaaacttacaggggatctcccaacggcaataatgttgatgccaatgcttcaacctgacaaggttgcaacccaattggatcccagggcatttgaacagcctgtctatgcagggccatcacttacatatggcaagaacaatgctctccctgcaatgctgaatcttgcaaacaacgagcttaccggtgcgatcccttcagaggttggtcagctgaaatcactcacattgctcaacttgagcttcaacagcttgtcaggacagattccacagcaacttttcgacctgacaaacctgcaggtggtagacttgtccaacaaccatctctcaggttcaattccaccggggctgaataacctgcacttccttacaacatttgatgcttctaacaacgactga
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| CDS seq | atgaccaagatgcaggaacttcaacttctcctagtccttgctgctcttgtgctgctctccttcctctctcctgccacctcctgcacggagcaggagaagagctcactcctccagttcctccgcgagctctcgccggattccagcagcaagttctcccggtcatggcagagcggcacaagctgctgcacgtgggaaggcatcgcctgcggcagcaatggcacggtgacggagctctcgctgccgtccatggcgctcgagggccccatctctgtatcaattgccaacctcaccggcttgcgccgcctcgacctgtcgtacaattctctctccggcgagctcccaccggagttgatctcctccgccagcgtcgccttcctcgacgtcagcttcaaccgcctcaacggcgagctgcaggaatcttcatcatcactgcctcaccatcctcttcaggttctgaacatctcccacaatttcttcgccggggagtttccgtccacgatatgggagaagaagagtgatcttgtcgcgatcagcgcgagccacaacactttcagtggcgcgctgccgtcttctttctgcatcagctcgccatccttcgctgttcttgatctctcatacaacctcttcagtggcagcattccagctgagataggtcagcttaagagattggaggagctccatttggactacaacaggatgtccggggaattgccatcagctctagggaactgtacaaatctcaagatcatcaacctcaagtacaacagcttcagaggagagcttctgaagttgtcaccaagaattggcaacctgaaatccctcttcttcctatcactttccaacaatgcttttgtgaatattgcaaatgtgattcatgcactcaagaactccaggaaaatcaacactttgatcataggaaccaacttcaagggtgagaccatgccagaggatataccaatcactgatggttttcagagtcttcaggttctttccataccatcttgctcattgtctggaaaaattcctctttggctatcaaaattggccaagctggaagttctggatctgtccaacaatcaactcactggaccaataccagactggatccatgacctgaacttcctctacttcatagatatatcaaacaacaaacttacaggggatctcccaacggcaataatgttgatgccaatgcttcaacctgacaaggttgcaacccaattggatcccagggcatttgaacagcctgtctatgcagggccatcacttacatatggcaagaacaatgctctccctgcaatgctgaatcttgcaaacaacgagcttaccggtgcgatcccttcagaggttggtcagctgaaatcactcacattgctcaacttgagcttcaacagcttgtcaggacagattccacagcaacttttcgacctgacaaacctgcaggtggtagacttgtccaacaaccatctctcaggttcaattccaccggggctgaataacctgcacttccttacaacatttgatgcttctaacaacgactga
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| Protein seq | MTKMQELQLLLVLAALVLLSFLSPATSCTEQEKSSLLQFLRELSPDSSSKFSRSWQSGTSCCTWEGIACGSNGTVTELSLPSMALEGPISVSIANLTGLRRLDLSYNSLSGELPPELISSASVAFLDVSFNRLNGELQESSSSLPHHPLQVLNISHNFFAGEFPSTIWEKKSDLVAISASHNTFSGALPSSFCISSPSFAVLDLSYNLFSGSIPAEIGQLKRLEELHLDYNRMSGELPSALGNCTNLKIINLKYNSFRGELLKLSPRIGNLKSLFFLSLSNNAFVNIANVIHALKNSRKINTLIIGTNFKGETMPEDIPITDGFQSLQVLSIPSCSLSGKIPLWLSKLAKLEVLDLSNNQLTGPIPDWIHDLNFLYFIDISNNKLTGDLPTAIMLMPMLQPDKVATQLDPRAFEQPVYAGPSLTYGKNNALPAMLNLANNELTGAIPSEVGQLKSLTLLNLSFNSLSGQIPQQLFDLTNLQVVDLSNNHLSGSIPPGLNNLHFLTTFDASNND |
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| Function | Tyrosine-sulfated glycopeptide receptor 1 [UniProtKB/Swiss-Prot:Q9C7S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0004410 | OsLima_02g0004410.01 | Chr02 | 3109606 | 3111503 | + | NAM | ||
| CDS seq | atgaccaagatgcaggaacttcaacttctcctagtccttgctgctcttgtgctgctctccttcctctctcctgccacctcctgcacggagcaggagaagagctcactcctccagttcctccgcgagctctcgccggattccagcagcaagttctcccggtcatggcagagcggcacaagctgctgcacgtgggaaggcatcgcctgcggcagcaatggcacggtgacggagctctcgctgccgtccatggcgctcgagggccccatctctgtatcaattgccaacctcaccggcttgcgccgcctcgacctgtcgtacaattctctctccggcgagctcccaccggagttgatctcctccgccagcgtcgccttcctcgacgtcagcttcaaccgcctcaacggcgagctgcaggaatcttcatcatcactgcctcaccatcctcttcaggttctgaacatctcccacaatttcttcgccggggagtttccgtccacgatatgggagaagaagagtgatcttgtcgcgatcagcgcgagccacaacactttcagtggcgcgctgccgtcttctttctgcatcagctcgccatccttcgctgttcttgatctctcatacaacctcttcagtggcagcattccagctgagataggtcagcttaagagattggaggagctccatttggactacaacaggatgtccggggaattgccatcagctctagggaactgtacaaatctcaagatcatcaacctcaagtacaacagcttcagaggagagcttctgaagttgtcaccaagaattggcaacctgaaatccctcttcttcctatcactttccaacaatgcttttgtgaatattgcaaatgtgattcatgcactcaagaactccaggaaaatcaacactttgatcataggaaccaacttcaagggtgagaccatgccagaggatataccaatcactgatggttttcagagtcttcaggttctttccataccatcttgctcattgtctggaaaaattcctctttggctatcaaaattggccaagctggaagttctggatctgtccaacaatcaactcactggaccaataccagactggatccatgacctgaacttcctctacttcatagatatatcaaacaacaaacttacaggggatctcccaacggcaataatgttgatgccaatgcttcaacctgacaaggttgcaacccaattggatcccagggcatttgaacagcctgtctatgcagggccatcacttacatatggcaagaacaatgctctccctgcaatgctgaatcttgcaaacaacgagcttaccggtgcgatcccttcagaggttggtcagctgaaatcactcacattgctcaacttgagcttcaacagcttgtcaggacagattccacagcaacttttcgacctgacaaacctgcaggtggtagacttgtccaacaaccatctctcaggttcaattccaccggggctgaataacctgcacttccttacaacatttgatgcttctaacaacgactga
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| Protein seq | MTKMQELQLLLVLAALVLLSFLSPATSCTEQEKSSLLQFLRELSPDSSSKFSRSWQSGTSCCTWEGIACGSNGTVTELSLPSMALEGPISVSIANLTGLRRLDLSYNSLSGELPPELISSASVAFLDVSFNRLNGELQESSSSLPHHPLQVLNISHNFFAGEFPSTIWEKKSDLVAISASHNTFSGALPSSFCISSPSFAVLDLSYNLFSGSIPAEIGQLKRLEELHLDYNRMSGELPSALGNCTNLKIINLKYNSFRGELLKLSPRIGNLKSLFFLSLSNNAFVNIANVIHALKNSRKINTLIIGTNFKGETMPEDIPITDGFQSLQVLSIPSCSLSGKIPLWLSKLAKLEVLDLSNNQLTGPIPDWIHDLNFLYFIDISNNKLTGDLPTAIMLMPMLQPDKVATQLDPRAFEQPVYAGPSLTYGKNNALPAMLNLANNELTGAIPSEVGQLKSLTLLNLSFNSLSGQIPQQLFDLTNLQVVDLSNNHLSGSIPPGLNNLHFLTTFDASNND
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0157000 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06240 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0157000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004340 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | RBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004170 | SBH | 0.137843 | 1.557139 | 0.736899 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004270 | RBH | 0.000000 | 0.051623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004300 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0050200 | SBH | 0.852885 | 2.079683 | 1.239989 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004300 | SBH | 0.0 | 0.0 | 0.055422 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0055100 | SBH | 0 | 0.003625 | 0.0141085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004550 | SBH | 0.022579 | 0.127643 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003980 | SBH | 0.070042 | 4.234505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004010 | SBH | 0.630622 | 3.130005 | 0.941510 |
