Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0004460 | OGI:02001240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:3210490-3212622 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagccgagaaacctcgacaagcacaactgatctaacaacacccctactccaaagaaggcaccaaatgcaatcacaaagatgaccttgtaacctccttgtctgctggaaccttgaggtgaatctaccattactggatcatcacaatcttgatctagtatatggccgcatagcctcggatttccatcgaagctggatcttgggaatgtatccaggtgtcctccagttggaacaggcccttgcaagtcattgttggagacgttgagtgcagagaggaagttcaggttgttcaggtcagctggaattgtaccagtgagatggttgttggacaggtctagtatttccaggtttgtaagatcaaggattgtttctggaatctctccatgtaggttgttgtagcccagaatgagtgagagtagtgccttcaactgaccaatctctgttgggatcacacctgttaatttgttgttttccagaatcatcactgcagggaaatcactgacagtgaagtacttaggtgatggaccagtgtaaacaggcagctcaaagatctttatgtccaaatgagatgtaaccatttctgatcttagcattggcatctctgttaactctgctgggatttcccctgaaaggctgttgtttgataaatctagatagaatagggagtttaaggtgctgatccaaaccggtattgatccacttaaatgattgttaaacaagaatagcatctccagattcttgagttttgatatccaaataggtacatttccaaacagtggacagttttccatagcaagaaccttaagattctcaaaaccatcaactgttttgtcgtctgaaatttcttcatccctaaagttgcctccaataagcaaggtggtgagatctctagagctcttgaggatttgaagtgtatttgaaatatttgtaaaagagttttcagcaagtgataggtaggttagtgacttgaggttggttattctgaatgagagctgaccatggaacttgttaaacgatagttgcaatgcattcaggttgctacatgtgtagacactctcaggaattgtgccagcgaagctgttatatgagacatgcaaagattttagactagacagtttggagaagttgaccttgccaagctctccactgaagttgttgctcccaagatttaatgctttgagattcgtgcagctgcctatagctggtgtcagctcccctgccatgctgttgtggtgcaagtgaatctcctccagcctcttgagcttcccaatggaatcagggatgttgccactgaacatattgaatccaagatcaaggacaaccaaattcctgagcttgatcatgcctgcaccatcaagaactccctgtaaaccattgttaggaaaagagaggtgctccagcgaggtcacattgaagagttcatcagggagagtccctctgaggctgttgtggccagcctttagcaatcttaacgaagaacagttaccgatctccggcggcaaattgccactgaaatggttgtaagagagatcgagcatggcaaaggaggacgatctgatgcagaagaaggttggcatcggcccagtgaaactgttgttgctggcgttgagcacaaccagattctccatctcctcccatgagctggacggaaaccgtcctgaaaacgagttgctggagacgttgatcacctgaatgcggcgaccggaagccgaagacgacggcgaatcttgcaggtctccattgaggaggttgaagctgatgtcaaggatgacgatgctgtctgacgacactatttctgcaggtaatccaccggacagtgagttgtgcgacaggttcagacgctgcaaacctggtagcctgccaagagcaggtgatatgctgccttcgagtttcttggaggccagcaagatgtctgtgattgtgacggccttgctggccgtgctgctgctgcaggtgatgccttcccatgagcagcagtctgtgccttgcggccacgatgcggcaaggccaccatggccgtcttgcgagagcccagccaagaactggaggagacagtttctctcatggtctgtgcagcagctgatggaagatgcagagaaaaggataagcgcaagaacgaggcagagagtaggcat
More
|
||||||||||
| CDS seq | atgcctactctctgcctcgttcttgcgcttatccttttctctgcatcttccatcagctgctgcacagaccatgagagaaactgtctcctccagttcttggctgggctctcgcaagacggccatggtggccttgccgcatcgtggccgcaaggcacagactgctgctcatgggaaggcatcacctgcagcagcagcacggccagcaaggccgtcacaatcacagacatcttgctggcctccaagaaactcgaaggcagcatatcacctgctcttggcaggctaccaggtttgcagcgtctgaacctgtcgcacaactcactgtccggtggattacctgcagaaatagtgtcgtcagacagcatcgtcatccttgacatcagcttcaacctcctcaatggagacctgcaagattcgccgtcgtcttcggcttccggtcgccgcattcaggtgatcaacgtctccagcaactcgttttcaggacggtttccgtccagctcatgggaggagatggagaatctggttgtgctcaacgccagcaacaacagtttcactgggccgatgccaaccttcttctgcatcagatcgtcctcctttgccatgctcgatctctcttacaaccatttcagtggcaatttgccgccggagatcggtaactgttcttcgttaagattgctaaaggctggccacaacagcctcagagggactctccctgatgaactcttcaatgtgacctcgctggagcacctctcttttcctaacaatggtttacagggagttcttgatggtgcaggcatgatcaagctcaggaatttggttgtccttgatcttggattcaatatgttcagtggcaacatccctgattccattgggaagctcaagaggctggaggagattcacttgcaccacaacagcatggcaggggagctgacaccagctataggcagctgcacgaatctcaaagcattaaatcttgggagcaacaacttcagtggagagcttggcaaggtcaacttctccaaactgtctagtctaaaatctttgcatgtctcatataacagcttcgctggcacaattcctgagagtgtctacacatgtagcaacctgaatgcattgcaactatcgtttaacaagttccatggtcagctctcattcagaataaccaacctcaagtcactaacctacctatcacttgctgaaaactcttttacaaatatttcaaatacacttcaaatcctcaagagctctagagatctcaccaccttgcttattggaggcaactttagggatgaagaaatttcagacgacaaaacagttgatggttttgagaatcttaaggttcttgctatggaaaactgtccactgtttggaaatgtacctatttggatatcaaaactcaagaatctggagatgctattcttgtttaacaatcatttaagtggatcaataccggtttggatcagcaccttaaactccctattctatctagatttatcaaacaacagcctttcaggggaaatcccagcagagttaacagagatgccaatgctaagatcagaaatggttacatctcatttggacataaagatctttgagctgcctgtttacactggtccatcacctaagtacttcactgtcagtgatttccctgcagtgatgattctggaaaacaacaaattaacaggtgtgatcccaacagagattggtcagttgaaggcactactctcactcattctgggctacaacaacctacatggagagattccagaaacaatccttgatcttacaaacctggaaatactagacctgtccaacaaccatctcactggtacaattccagctgacctgaacaacctgaacttcctctctgcactcaacgtctccaacaatgacttgcaagggcctgttccaactggaggacacctggatacattcccaagatccagcttcgatggaaatccgaggctatgcggccatatactagatcaagattgtgatgatccagtaatggtagattcacctcaaggttccagcagacaaggaggttacaaggtcatctttgtgattgcatttggtgccttctttggagtaggggtgttgttagatcagttgtgcttgtcgaggtttctcggctag
More
|
||||||||||
| Protein seq | MPTLCLVLALILFSASSISCCTDHERNCLLQFLAGLSQDGHGGLAASWPQGTDCCSWEGITCSSSTASKAVTITDILLASKKLEGSISPALGRLPGLQRLNLSHNSLSGGLPAEIVSSDSIVILDISFNLLNGDLQDSPSSSASGRRIQVINVSSNSFSGRFPSSSWEEMENLVVLNASNNSFTGPMPTFFCIRSSSFAMLDLSYNHFSGNLPPEIGNCSSLRLLKAGHNSLRGTLPDELFNVTSLEHLSFPNNGLQGVLDGAGMIKLRNLVVLDLGFNMFSGNIPDSIGKLKRLEEIHLHHNSMAGELTPAIGSCTNLKALNLGSNNFSGELGKVNFSKLSSLKSLHVSYNSFAGTIPESVYTCSNLNALQLSFNKFHGQLSFRITNLKSLTYLSLAENSFTNISNTLQILKSSRDLTTLLIGGNFRDEEISDDKTVDGFENLKVLAMENCPLFGNVPIWISKLKNLEMLFLFNNHLSGSIPVWISTLNSLFYLDLSNNSLSGEIPAELTEMPMLRSEMVTSHLDIKIFELPVYTGPSPKYFTVSDFPAVMILENNKLTGVIPTEIGQLKALLSLILGYNNLHGEIPETILDLTNLEILDLSNNHLTGTIPADLNNLNFLSALNVSNNDLQGPVPTGGHLDTFPRSSFDGNPRLCGHILDQDCDDPVMVDSPQGSSRQGGYKVIFVIAFGAFFGVGVLLDQLCLSRFLG |
||||||||||
| Function | Tyrosine-sulfated glycopeptide receptor 1 [UniProtKB/Swiss-Prot:Q9C7S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0004460 | OsLiXu_02g0004460.01 | Chr02 | 3210490 | 3212622 | - | NAM | ||
| CDS seq | atgcctactctctgcctcgttcttgcgcttatccttttctctgcatcttccatcagctgctgcacagaccatgagagaaactgtctcctccagttcttggctgggctctcgcaagacggccatggtggccttgccgcatcgtggccgcaaggcacagactgctgctcatgggaaggcatcacctgcagcagcagcacggccagcaaggccgtcacaatcacagacatcttgctggcctccaagaaactcgaaggcagcatatcacctgctcttggcaggctaccaggtttgcagcgtctgaacctgtcgcacaactcactgtccggtggattacctgcagaaatagtgtcgtcagacagcatcgtcatccttgacatcagcttcaacctcctcaatggagacctgcaagattcgccgtcgtcttcggcttccggtcgccgcattcaggtgatcaacgtctccagcaactcgttttcaggacggtttccgtccagctcatgggaggagatggagaatctggttgtgctcaacgccagcaacaacagtttcactgggccgatgccaaccttcttctgcatcagatcgtcctcctttgccatgctcgatctctcttacaaccatttcagtggcaatttgccgccggagatcggtaactgttcttcgttaagattgctaaaggctggccacaacagcctcagagggactctccctgatgaactcttcaatgtgacctcgctggagcacctctcttttcctaacaatggtttacagggagttcttgatggtgcaggcatgatcaagctcaggaatttggttgtccttgatcttggattcaatatgttcagtggcaacatccctgattccattgggaagctcaagaggctggaggagattcacttgcaccacaacagcatggcaggggagctgacaccagctataggcagctgcacgaatctcaaagcattaaatcttgggagcaacaacttcagtggagagcttggcaaggtcaacttctccaaactgtctagtctaaaatctttgcatgtctcatataacagcttcgctggcacaattcctgagagtgtctacacatgtagcaacctgaatgcattgcaactatcgtttaacaagttccatggtcagctctcattcagaataaccaacctcaagtcactaacctacctatcacttgctgaaaactcttttacaaatatttcaaatacacttcaaatcctcaagagctctagagatctcaccaccttgcttattggaggcaactttagggatgaagaaatttcagacgacaaaacagttgatggttttgagaatcttaaggttcttgctatggaaaactgtccactgtttggaaatgtacctatttggatatcaaaactcaagaatctggagatgctattcttgtttaacaatcatttaagtggatcaataccggtttggatcagcaccttaaactccctattctatctagatttatcaaacaacagcctttcaggggaaatcccagcagagttaacagagatgccaatgctaagatcagaaatggttacatctcatttggacataaagatctttgagctgcctgtttacactggtccatcacctaagtacttcactgtcagtgatttccctgcagtgatgattctggaaaacaacaaattaacaggtgtgatcccaacagagattggtcagttgaaggcactactctcactcattctgggctacaacaacctacatggagagattccagaaacaatccttgatcttacaaacctggaaatactagacctgtccaacaaccatctcactggtacaattccagctgacctgaacaacctgaacttcctctctgcactcaacgtctccaacaatgacttgcaagggcctgttccaactggaggacacctggatacattcccaagatccagcttcgatggaaatccgaggctatgcggccatatactagatcaagattgtgatgatccagtaatggtagattcacctcaaggttccagcagacaaggaggttacaaggtcatctttgtgattgcatttggtgccttctttggagtaggggtgttgttagatcagttgtgcttgtcgaggtttctcggctag
More
|
|||||||
| Protein seq | MPTLCLVLALILFSASSISCCTDHERNCLLQFLAGLSQDGHGGLAASWPQGTDCCSWEGITCSSSTASKAVTITDILLASKKLEGSISPALGRLPGLQRLNLSHNSLSGGLPAEIVSSDSIVILDISFNLLNGDLQDSPSSSASGRRIQVINVSSNSFSGRFPSSSWEEMENLVVLNASNNSFTGPMPTFFCIRSSSFAMLDLSYNHFSGNLPPEIGNCSSLRLLKAGHNSLRGTLPDELFNVTSLEHLSFPNNGLQGVLDGAGMIKLRNLVVLDLGFNMFSGNIPDSIGKLKRLEEIHLHHNSMAGELTPAIGSCTNLKALNLGSNNFSGELGKVNFSKLSSLKSLHVSYNSFAGTIPESVYTCSNLNALQLSFNKFHGQLSFRITNLKSLTYLSLAENSFTNISNTLQILKSSRDLTTLLIGGNFRDEEISDDKTVDGFENLKVLAMENCPLFGNVPIWISKLKNLEMLFLFNNHLSGSIPVWISTLNSLFYLDLSNNSLSGEIPAELTEMPMLRSEMVTSHLDIKIFELPVYTGPSPKYFTVSDFPAVMILENNKLTGVIPTEIGQLKALLSLILGYNNLHGEIPETILDLTNLEILDLSNNHLTGTIPADLNNLNFLSALNVSNNDLQGPVPTGGHLDTFPRSSFDGNPRLCGHILDQDCDDPVMVDSPQGSSRQGGYKVIFVIAFGAFFGVGVLLDQLCLSRFLG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.086416 | 0.0 | 0.053964 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0156600 | RBH | 1.764994 | 0.846738 | 1.808238 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06200 | RBH | 1.233311 | 0.576956 | 0.430655 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0156600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004120 | SBH | 0.124114 | 14.442955 | 1.259517 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004260 | SBH | 0.069201 | 0.845967 | 0.776244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004360 | SBH | 0.038443 | 0.407024 | 0.900679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004020 | SBH | 0.031011 | 0.040793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004280 | SBH | 1.714308 | 1.291915 | 1.010436 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0052600 | SBH | 0.2532285 | 0 | 0.0206475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0054800 | SBH | 0.5707365 | 1.043263 | 0.1931665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004180 | SBH | 0.043297 | 0.057747 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004210 | SBH | 0.000000 | 0.847441 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004510 | SBH | 0.0 | 2.960274 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0007540 | SBH | 0.134091 | 0.0 | 0.045256 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004010 | SBH | 0.630622 | 3.130005 | 0.941510 |
