Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0173500 | OGI:11010520 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:3633303-3638645 | ||||||||
| Gene Symbol | RLCK314, OsRLCK314, 25L2, Hwi1, HWI1, 25L1 | ||||||||||
| DNA seq | ACTCTCCGTCCCTCGGTAACTGTAAGCTCCTCATGGCGAGCCGGAGCCGGTGACCGCTGGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGCGGGAGGCGAGGGTTACTCGGGATACGGCGGCCCGAGAGGAGATGGCAGCAGGTTGCAACAGGCGTTCCATGGTTTCAGGGCTCCACACCCTCCGGGTGACGCCGAGCCGGGGAGTATCGCCGTCTTGGAGAACCTAGGCCTCCTATCGCCAAATCTACGCCCATCAACGAGACCTATCAGCTGCGCTGGGATTACTTCCGAGGTTAGCCCAAAAAACCGAATCTCTACTATCTGAAACTCTGAACCATGACAGCATGTTCACAATTCTTAAAACTTTGGGAGTTGGTATATGTTAATATATCGTTGACTACTGTAACTCAGGTGTACCTTCAGTTCAGCGGCTGAAGGTACCAATTCATGCGAATAGTACAACGTTTTTAGATTAAATTAGATGGTGATGATCTATAAGTTTCATTGATTTGAGTGAGGATACCAGTGTAAGATATTTGTGAACATATTTACCAATATGATTACTCTATATGTATTTGGTCACTGAAAGTAGGGTAATTTTACCATCCTTAAAAAGGTACCAGGAGTTATCACATTTTCTAGCCACCTCCAAGTACTTTCTCAAGGACCATAAAATTTCTCCTGAAAGTATGCTTGATATCGAATGTTCCTGACCTTCAATCGTACATAACAATTTAATTTCAGGGGAATAATAGAAATGGCTGGAGAGACTTGATGAAGATGGATAGGTGGGTGACTGAACCCTTGGGTGATAGCTGGTTGTTGGCAACTTGGCGTGCAACTTGGTACATCACTCATTACAGGGAGAAGCGCATGCTAGTTGAGATGGAGGAGCTCCTCTGCTTCTTCACGGTAGAACATCACTATCACAGGTAATTGAACCAAACTGTGTAGCTTGTAGCCTCTCTTATGGAGGTCGGACCAAGTCACTGGTTAATTGAGCCTATCTTTGACTGCTGATATCTCATGGGATCCTGTTGTGACATAATTCATGTTTCATGGGGTTCTATAGTTTTAGCTTTCATGGCATTCGATCCATAAAAAATGGACCTACAGTACAAGCGTCAAGTAAATCACATGACCAGTGTTTCAGAAATGCATAATTTGTGTTTGAAAAAAGAGAGACATGATTTGAAGAAGTTTCATGGACGTATCAAGTAGATTAGAAAGATTTGCGCGGAGTATCCGAGTAGGGACAGAGGAGACTCCTGGTTACCATTCCACGTACATTTTCTAAATCCTATCCTCTAATAGTAGAGTTTCCAAGGGTTGATGGGAATCCATTCCAATTGGCCATCGCCATCTCTGTCCCAATCACATACTGTTCTGCTCTGCTTGAGAGTGAACTCCCTTATGTTTTTTTGCAATTTTTCCATGTGAAAGATTATTTCGATAGCAGTGGCTTCCACTTCCAGAATTTGGAGGCTTATCTGGAGCAGTGGCTAGAAGTGAATGGACTGCAAATTTGATAGATCCTTCTAGACTGCAGCTGGAAAGATGACCTGCTAGAAGAGGCAGATTTAAGGCTTGATGGATAGAGGAGAGAGGAACCTAGTCCAAATGAAAACACCTATAAGTAAGTAGCAGCTGGCCACAAGTACATGACGACCTACGCACTGCTGCTGCTCCAACTGGCCTGCATCGTATTCTGCAAGGTACACAGCTCGATCTAGTCATTTTTCCTCCCTCATCAAGTATTCGCTTGTGTAGATCTCATGGAGCTTAGTACTATTCATCAGGGTTTGGTTTGTCACTCACTCCTCATGAGTTAGTTTCTGCCAGAAAGAGTGAAAATTTACCATTGTTGGACTTTTACTGAGGAATATAAATAGCTCTTATGGTAAAAGTAAGTTCAAAAGATCCTTAAGGTATTTTCGTACTTAACAAATAACTAATGTTAATATCTGCTTCCAGGGACATCTAAATTGTGCTGTCCTTTTTTCAGCTTTGCATATAATAGGAAGGTGATACACAATACTCATAGCGTTGGCATGAAGCCTATTGCAATTGGACAGTCGTTCGTTCTGCTACTGGTTTTTAGTACTGTGAGTGTTGTCATTTGCTCTGATGGAAATGAGACAGATCGGCTGTCACTGCTTCAGTTCAAACAGGCTATCAGCCTCGACCCACAGCATGCCTTGCTCTCCTGGAATGATAGCACCCATTTCTGCAGCTGGGAAGGTGTCTCATGTAGTTTGAGGTATCCACGTCGTGTCACTTCCCTTGATCTATCTAACAGAGGTTTGGTGGGGCTCATATCTCCTTCACTTGGAAACCTGACATCTCTTGAACACCTCTTCCTGAATACCAATCAACTCAGCGGACAAATCCCTCCGTCACTTGGTCACTTGCATCACCTTCGATCACTTTACTTAGCAAACAACACGCTACAAGGCAACATACCTAGCTTTGCTAATTGTTCTGCTCTCAAAATACTTCATCTAAGCCGCAATCAGATTGTTGGACGTATTCCCAAAAATGTTCATTTACCACCAAGTATTAGTCAACTGATAGTAAACGATAATAACCTTACTGGTACCATCCCCACTTCACTTGGCGATGTTGCGACACTAAATATACTTATTGTTTCATACAATTATATTGAAGGCAGTATCCCGGATGAAATTGGAAAGATGCCTGTCTTGACAAACTTGTATGTGGGTGGAAACAATTTATCTGGTCGATTTCCACTAGCTCTCACAAACATTTCTTCTCTTGTTGAACTGGGACTTGGCTTCAATTATTTTCATGGTGGTCTGCCGCCAAATCTTGGTACTTCTCTACCCAGGCTTCAGGTGCTTGAAATAGCTTCTAATCTCTTTGAAGGACACCTCCCTTATTCCATTTCAAATGCTACTAGTCTTTACACCATAGACTTTTCAAGCAATTATTTCTCTGGGGTGGTGCCAAGTTCCATCGGTATGCTTAAGGAGCTTTCCTTGTTGAATCTTGAGTGGAATCAGTTTGAGTCGTTCAATAATAAAGATTTGGAGTTCCTGCACAGCCTAAGCAATTGCACTGACCTTCAAGTGCTGGCACTGTATGACAATAAACTGAAGGGACAGATACCATATTCATTAGGCAACCTTTCTATCCAGCTTCAGTACCTCTTTCTGGGAAGCAATCAACTATCAGGGGGCTTTCCCTCTGGCATAAGAAACCTTCCCAACCTGATTTCTCTAGGTTTGAATGAAAACCATTTTACCGGGATAGTTCCAGAATGGGTTGGCACACTTGCAAATTTGGAAGGCATATACTTAGATAACAACAAGTTTACAGGTTTTCTTCCATCATCCATATCCAATATATCAAACCTGGAAGATCTCCGCCTTTCCACAAATCTATTTGGAGGAAAAATACCTGCAGGCTTGGGAAAACTCCAAGTCCTTCATCTAATGGAACTTTCTGATAACAATCTCCTTGGCAGCATACCAGAGAGCATTTTCAGCATTCCAACGTTGACACGTTGTATGCTATCTTTCAACAAACTAGACGGGGCACTTCCCACTGAAATTGGCAATGCCAAGCAACTTGGATCTCTGCATCTATCAGCAAATAAGCTTACTGGGCATATTCCTAGCACCTTGAGTAACTGTGATAGTTTGGAAGAACTACACTTAGATCAAAATTTTCTTAATGGAAGCATCCCCACATCATTAGGAAATATGCAAAGCTTAACAGCAGTCAACCTGTCTTATAATGACCTATCAGGATCCATACCAGATTCTCTTGGTAGATTGCAATCTCTTGAGCAACTAGATTTGTCATTCAACAATCTGGTAGGAGAAGTCCCAGGCATAGGGGTTTTCAAGAATGCAACTGCCATACGGTTAAACAGAAATCATGGGCTTTGTAATGGGGCACTGGAGCTGGACCTACCCAGATGCGCTACTATATCTTCTAGTGTTAGTAAGCACAAACCATCTCATCTACTCATGTTTTTTGTCCCATTTGCCAGTGTGGTTTCACTAGCTATGGTCACATGTATCATCCTGTTTTGGAGGAAAAAACAGAAAAAAGAATTTGTCTCGTTACCTTCTTTTGGTAAGAAGTTTCCCAAAGTTTCTTATAGGGATCTAGCTAGGGCAACAGATGGGTTCTCTGCATCCAATTTAATTGGCACCGGAAGATATGGTTCAGTATATATGGGGAAGTTATTTCATAGTAAATGTCCAGTTGCTGTGAAAGTCTTCAATCTTGACATAAGAGGAACACAGAGGAGCTTTATATCAGAATGTAATGCTTTAAGAAATCTTCGGCATCGCAACATTGTACGGATTATAACAGCTTGCTCAACAGTTGATTCGAAAGGAAATGATTTCAAGGCTTTAATTTATGAATTCATGCCCAGAGGTGACCTGTATCAAGTCCTATATTCAACCTGTGCTGATGAAAATTCTTCAACTAGCCATTTTGGTTTGGCCCAAAGGGTTAGCATAGTGATGGATATAGCCAATGCATTGGAGTACCTGCACAATCATAACAAAGGAATTATTGTTCATTGCGATCTGAAGCCTAGCAACATTCTCTTGGATGATAATATGACTGCTCATGTTCGTGACTTTGGCCTTTCAAGGTTTGAAATTTATTCCATGACATCATCTTTTGGTTGCTCAACTTCTTCAGTTGCAATCAGTGGAACCATAGGATATGTTGCTCCAGGTAACTTCCTCTGCTAATCTTTTTTTATACTCATACTTGATAACAGATTTTTCAACAACAATACCAAGCTAACATCTGAACTGATGTCATATATGATCAACAGAATGCGCAGAGAGTGGTCAAGTTTCAACAGCCACAGATGTTTACAGCTTTGGTGTCGTTCTCCTTGAGATATTCATCCGAAGGAGGCCAACAGATGACATGTTTAATGATGGACTGAGCATCGCAAAATTTGCAGAGTTGAACCTCCCTGATAGGGTGTTGCAGATTGTTGATCCCCAGCTGCAGCAAGATCTGGAGACTTGCCAAGAAACCCCGATGGCCATAAAAAAGAAACTCACAGATTGCCTGCTTTCAGTCCTAAGTATTGGTCTTTCTTGTACTAAATCATCCCCGAGTGAACGCAACAGCATGAAGGAGGTGGCTATAGAGTTGCATAGAATTTGGGATGCATATCTCAGAGAAAACTAACACTTTTCCTACTATCAGTTATCGAATTTTTTTTGTGTTAATCAGGAGGTATATACCTCTGATACTATGATGTATTTATATATATACCTCTCAATACCTTTCTAGAACCACGCAAAACCTCTCTTTTACAGTGTTATATCATTCCAGGC
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| CDS seq | ATGAAGCCTATTGCAATTGGACAGTCGTTCGTTCTGCTACTGGTTTTTAGTACTGTGAGTGTTGTCATTTGCTCTGATGGAAATGAGACAGATCGGCTGTCACTGCTTCAGTTCAAACAGGCTATCAGCCTCGACCCACAGCATGCCTTGCTCTCCTGGAATGATAGCACCCATTTCTGCAGCTGGGAAGGTGTCTCATGTAGTTTGAGGTATCCACGTCGTGTCACTTCCCTTGATCTATCTAACAGAGGTTTGGTGGGGCTCATATCTCCTTCACTTGGAAACCTGACATCTCTTGAACACCTCTTCCTGAATACCAATCAACTCAGCGGACAAATCCCTCCGTCACTTGGTCACTTGCATCACCTTCGATCACTTTACTTAGCAAACAACACGCTACAAGGCAACATACCTAGCTTTGCTAATTGTTCTGCTCTCAAAATACTTCATCTAAGCCGCAATCAGATTGTTGGACGTATTCCCAAAAATGTTCATTTACCACCAAGTATTAGTCAACTGATAGTAAACGATAATAACCTTACTGGTACCATCCCCACTTCACTTGGCGATGTTGCGACACTAAATATACTTATTGTTTCATACAATTATATTGAAGGCAGTATCCCGGATGAAATTGGAAAGATGCCTGTCTTGACAAACTTGTATGTGGGTGGAAACAATTTATCTGGTCGATTTCCACTAGCTCTCACAAACATTTCTTCTCTTGTTGAACTGGGACTTGGCTTCAATTATTTTCATGGTGGTCTGCCGCCAAATCTTGGTACTTCTCTACCCAGGCTTCAGGTGCTTGAAATAGCTTCTAATCTCTTTGAAGGACACCTCCCTTATTCCATTTCAAATGCTACTAGTCTTTACACCATAGACTTTTCAAGCAATTATTTCTCTGGGGTGGTGCCAAGTTCCATCGGTATGCTTAAGGAGCTTTCCTTGTTGAATCTTGAGTGGAATCAGTTTGAGTCGTTCAATAATAAAGATTTGGAGTTCCTGCACAGCCTAAGCAATTGCACTGACCTTCAAGTGCTGGCACTGTATGACAATAAACTGAAGGGACAGATACCATATTCATTAGGCAACCTTTCTATCCAGCTTCAGTACCTCTTTCTGGGAAGCAATCAACTATCAGGGGGCTTTCCCTCTGGCATAAGAAACCTTCCCAACCTGATTTCTCTAGGTTTGAATGAAAACCATTTTACCGGGATAGTTCCAGAATGGGTTGGCACACTTGCAAATTTGGAAGGCATATACTTAGATAACAACAAGTTTACAGGTTTTCTTCCATCATCCATATCCAATATATCAAACCTGGAAGATCTCCGCCTTTCCACAAATCTATTTGGAGGAAAAATACCTGCAGGCTTGGGAAAACTCCAAGTCCTTCATCTAATGGAACTTTCTGATAACAATCTCCTTGGCAGCATACCAGAGAGCATTTTCAGCATTCCAACGTTGACACGTTGTATGCTATCTTTCAACAAACTAGACGGGGCACTTCCCACTGAAATTGGCAATGCCAAGCAACTTGGATCTCTGCATCTATCAGCAAATAAGCTTACTGGGCATATTCCTAGCACCTTGAGTAACTGTGATAGTTTGGAAGAACTACACTTAGATCAAAATTTTCTTAATGGAAGCATCCCCACATCATTAGGAAATATGCAAAGCTTAACAGCAGTCAACCTGTCTTATAATGACCTATCAGGATCCATACCAGATTCTCTTGGTAGATTGCAATCTCTTGAGCAACTAGATTTGTCATTCAACAATCTGGTAGGAGAAGTCCCAGGCATAGGGGTTTTCAAGAATGCAACTGCCATACGGTTAAACAGAAATCATGGGCTTTGTAATGGGGCACTGGAGCTGGACCTACCCAGATGCGCTACTATATCTTCTAGTGTTAGTAAGCACAAACCATCTCATCTACTCATGTTTTTTGTCCCATTTGCCAGTGTGGTTTCACTAGCTATGGTCACATGTATCATCCTGTTTTGGAGGAAAAAACAGAAAAAAGAATTTGTCTCGTTACCTTCTTTTGGTAAGAAGTTTCCCAAAGTTTCTTATAGGGATCTAGCTAGGGCAACAGATGGGTTCTCTGCATCCAATTTAATTGGCACCGGAAGATATGGTTCAGTATATATGGGGAAGTTATTTCATAGTAAATGTCCAGTTGCTGTGAAAGTCTTCAATCTTGACATAAGAGGAACACAGAGGAGCTTTATATCAGAATGTAATGCTTTAAGAAATCTTCGGCATCGCAACATTGTACGGATTATAACAGCTTGCTCAACAGTTGATTCGAAAGGAAATGATTTCAAGGCTTTAATTTATGAATTCATGCCCAGAGGTGACCTGTATCAAGTCCTATATTCAACCTGTGCTGATGAAAATTCTTCAACTAGCCATTTTGGTTTGGCCCAAAGGGTTAGCATAGTGATGGATATAGCCAATGCATTGGAGTACCTGCACAATCATAACAAAGGAATTATTGTTCATTGCGATCTGAAGCCTAGCAACATTCTCTTGGATGATAATATGACTGCTCATGTTCGTGACTTTGGCCTTTCAAGGTTTGAAATTTATTCCATGACATCATCTTTTGGTTGCTCAACTTCTTCAGTTGCAATCAGTGGAACCATAGGATATGTTGCTCCAGAATGCGCAGAGAGTGGTCAAGTTTCAACAGCCACAGATGTTTACAGCTTTGGTGTCGTTCTCCTTGAGATATTCATCCGAAGGAGGCCAACAGATGACATGTTTAATGATGGACTGAGCATCGCAAAATTTGCAGAGTTGAACCTCCCTGATAGGGTGTTGCAGATTGTTGATCCCCAGCTGCAGCAAGATCTGGAGACTTGCCAAGAAACCCCGATGGCCATAAAAAAGAAACTCACAGATTGCCTGCTTTCAGTCCTAAGTATTGGTCTTTCTTGTACTAAATCATCCCCGAGTGAACGCAACAGCATGAAGGAGGTGGCTATAGAGTTGCATAGAATTTGGGATGCATATCTCAGAGAAAACTAA
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| Protein seq | MKPIAIGQSFVLLLVFSTVSVVICSDGNETDRLSLLQFKQAISLDPQHALLSWNDSTHFCSWEGVSCSLRYPRRVTSLDLSNRGLVGLISPSLGNLTSLEHLFLNTNQLSGQIPPSLGHLHHLRSLYLANNTLQGNIPSFANCSALKILHLSRNQIVGRIPKNVHLPPSISQLIVNDNNLTGTIPTSLGDVATLNILIVSYNYIEGSIPDEIGKMPVLTNLYVGGNNLSGRFPLALTNISSLVELGLGFNYFHGGLPPNLGTSLPRLQVLEIASNLFEGHLPYSISNATSLYTIDFSSNYFSGVVPSSIGMLKELSLLNLEWNQFESFNNKDLEFLHSLSNCTDLQVLALYDNKLKGQIPYSLGNLSIQLQYLFLGSNQLSGGFPSGIRNLPNLISLGLNENHFTGIVPEWVGTLANLEGIYLDNNKFTGFLPSSISNISNLEDLRLSTNLFGGKIPAGLGKLQVLHLMELSDNNLLGSIPESIFSIPTLTRCMLSFNKLDGALPTEIGNAKQLGSLHLSANKLTGHIPSTLSNCDSLEELHLDQNFLNGSIPTSLGNMQSLTAVNLSYNDLSGSIPDSLGRLQSLEQLDLSFNNLVGEVPGIGVFKNATAIRLNRNHGLCNGALELDLPRCATISSSVSKHKPSHLLMFFVPFASVVSLAMVTCIILFWRKKQKKEFVSLPSFGKKFPKVSYRDLARATDGFSASNLIGTGRYGSVYMGKLFHSKCPVAVKVFNLDIRGTQRSFISECNALRNLRHRNIVRIITACSTVDSKGNDFKALIYEFMPRGDLYQVLYSTCADENSSTSHFGLAQRVSIVMDIANALEYLHNHNKGIIVHCDLKPSNILLDDNMTAHVRDFGLSRFEIYSMTSSFGCSTSSVAISGTIGYVAPECAESGQVSTATDVYSFGVVLLEIFIRRRPTDDMFNDGLSIAKFAELNLPDRVLQIVDPQLQQDLETCQETPMAIKKKLTDCLLSVLSIGLSCTKSSPSERNSMKEVAIELHRIWDAYLREN |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0173500 | OsNip_11t0173500-01 | Chr11 | 3633303 | 3638002 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAGCCTATTGCAATTGGACAGTCGTTCGTTCTGCTACTGGTTTTTAGTACTGTGAGTGTTGTCATTTGCTCTGATGGAAATGAGACAGATCGGCTGTCACTGCTTCAGTTCAAACAGGCTATCAGCCTCGACCCACAGCATGCCTTGCTCTCCTGGAATGATAGCACCCATTTCTGCAGCTGGGAAGGTGTCTCATGTAGTTTGAGGTATCCACGTCGTGTCACTTCCCTTGATCTATCTAACAGAGGTTTGGTGGGGCTCATATCTCCTTCACTTGGAAACCTGACATCTCTTGAACACCTCTTCCTGAATACCAATCAACTCAGCGGACAAATCCCTCCGTCACTTGGTCACTTGCATCACCTTCGATCACTTTACTTAGCAAACAACACGCTACAAGGCAACATACCTAGCTTTGCTAATTGTTCTGCTCTCAAAATACTTCATCTAAGCCGCAATCAGATTGTTGGACGTATTCCCAAAAATGTTCATTTACCACCAAGTATTAGTCAACTGATAGTAAACGATAATAACCTTACTGGTACCATCCCCACTTCACTTGGCGATGTTGCGACACTAAATATACTTATTGTTTCATACAATTATATTGAAGGCAGTATCCCGGATGAAATTGGAAAGATGCCTGTCTTGACAAACTTGTATGTGGGTGGAAACAATTTATCTGGTCGATTTCCACTAGCTCTCACAAACATTTCTTCTCTTGTTGAACTGGGACTTGGCTTCAATTATTTTCATGGTGGTCTGCCGCCAAATCTTGGTACTTCTCTACCCAGGCTTCAGGTGCTTGAAATAGCTTCTAATCTCTTTGAAGGACACCTCCCTTATTCCATTTCAAATGCTACTAGTCTTTACACCATAGACTTTTCAAGCAATTATTTCTCTGGGGTGGTGCCAAGTTCCATCGGTATGCTTAAGGAGCTTTCCTTGTTGAATCTTGAGTGGAATCAGTTTGAGTCGTTCAATAATAAAGATTTGGAGTTCCTGCACAGCCTAAGCAATTGCACTGACCTTCAAGTGCTGGCACTGTATGACAATAAACTGAAGGGACAGATACCATATTCATTAGGCAACCTTTCTATCCAGCTTCAGTACCTCTTTCTGGGAAGCAATCAACTATCAGGGGGCTTTCCCTCTGGCATAAGAAACCTTCCCAACCTGATTTCTCTAGGTTTGAATGAAAACCATTTTACCGGGATAGTTCCAGAATGGGTTGGCACACTTGCAAATTTGGAAGGCATATACTTAGATAACAACAAGTTTACAGGTTTTCTTCCATCATCCATATCCAATATATCAAACCTGGAAGATCTCCGCCTTTCCACAAATCTATTTGGAGGAAAAATACCTGCAGGCTTGGGAAAACTCCAAGTCCTTCATCTAATGGAACTTTCTGATAACAATCTCCTTGGCAGCATACCAGAGAGCATTTTCAGCATTCCAACGTTGACACGTTGTATGCTATCTTTCAACAAACTAGACGGGGCACTTCCCACTGAAATTGGCAATGCCAAGCAACTTGGATCTCTGCATCTATCAGCAAATAAGCTTACTGGGCATATTCCTAGCACCTTGAGTAACTGTGATAGTTTGGAAGAACTACACTTAGATCAAAATTTTCTTAATGGAAGCATCCCCACATCATTAGGAAATATGCAAAGCTTAACAGCAGTCAACCTGTCTTATAATGACCTATCAGGATCCATACCAGATTCTCTTGGTAGATTGCAATCTCTTGAGCAACTAGATTTGTCATTCAACAATCTGGTAGGAGAAGTCCCAGGCATAGGGGTTTTCAAGAATGCAACTGCCATACGGTTAAACAGAAATCATGGGCTTTGTAATGGGGCACTGGAGCTGGACCTACCCAGATGCGCTACTATATCTTCTAGTGTTAGTAAGCACAAACCATCTCATCTACTCATGTTTTTTGTCCCATTTGCCAGTGTGGTTTCACTAGCTATGGTCACATGTATCATCCTGTTTTGGAGGAAAAAACAGAAAAAAGAATTTGTCTCGTTACCTTCTTTTGGTAAGAAGTTTCCCAAAGTTTCTTATAGGGATCTAGCTAGGGCAACAGATGGGTTCTCTGCATCCAATTTAATTGGCACCGGAAGATATGGTTCAGTATATATGGGGAAGTTATTTCATAGTAAATGTCCAGTTGCTGTGAAAGTCTTCAATCTTGACATAAGAGGAACACAGAGGAGCTTTATATCAGAATGTAATGCTTTAAGAAATCTTCGGCATCGCAACATTGTACGGATTATAACAGCTTGCTCAACAGTTGATTCGAAAGGAAATGATTTCAAGGCTTTAATTTATGAATTCATGCCCAGAGGTGACCTGTATCAAGTCCTATATTCAACCTGTGCTGATGAAAATTCTTCAACTAGCCATTTTGGTTTGGCCCAAAGGGTTAGCATAGTGATGGATATAGCCAATGCATTGGAGTACCTGCACAATCATAACAAAGGAATTATTGTTCATTGCGATCTGAAGCCTAGCAACATTCTCTTGGATGATAATATGACTGCTCATGTTCGTGACTTTGGCCTTTCAAGGTTTGAAATTTATTCCATGACATCATCTTTTGGTTGCTCAACTTCTTCAGTTGCAATCAGTGG
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| Protein seq | MKPIAIGQSFVLLLVFSTVSVVICSDGNETDRLSLLQFKQAISLDPQHALLSWNDSTHFCSWEGVSCSLRYPRRVTSLDLSNRGLVGLISPSLGNLTSLEHLFLNTNQLSGQIPPSLGHLHHLRSLYLANNTLQGNIPSFANCSALKILHLSRNQIVGRIPKNVHLPPSISQLIVNDNNLTGTIPTSLGDVATLNILIVSYNYIEGSIPDEIGKMPVLTNLYVGGNNLSGRFPLALTNISSLVELGLGFNYFHGGLPPNLGTSLPRLQVLEIASNLFEGHLPYSISNATSLYTIDFSSNYFSGVVPSSIGMLKELSLLNLEWNQFESFNNKDLEFLHSLSNCTDLQVLALYDNKLKGQIPYSLGNLSIQLQYLFLGSNQLSGGFPSGIRNLPNLISLGLNENHFTGIVPEWVGTLANLEGIYLDNNKFTGFLPSSISNISNLEDLRLSTNLFGGKIPAGLGKLQVLHLMELSDNNLLGSIPESIFSIPTLTRCMLSFNKLDGALPTEIGNAKQLGSLHLSANKLTGHIPSTLSNCDSLEELHLDQNFLNGSIPTSLGNMQSLTAVNLSYNDLSGSIPDSLGRLQSLEQLDLSFNNLVGEVPGIGVFKNATAIRLNRNHGLCNGALELDLPRCATISSSVSKHKPSHLLMFFVPFASVVSLAMVTCIILFWRKKQKKEFVSLPSFGKKFPKVSYRDLARATDGFSASNLIGTGRYGSVYMGKLFHSKCPVAVKVFNLDIRGTQRSFISECNALRNLRHRNIVRIITACSTVDSKGNDFKALIYEFMPRGDLYQVLYSTCADENSSTSHFGLAQRVSIVMDIANALEYLHNHNKGIIVHCDLKPSNILLDDNMTAHVRDFGLSRFEIYSMTSSFGCSTSSVAIS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0173500 | OsNip_11t0173500-02 | Chr11 | 3633306 | 3634324 | + | RAP2018-11-26 | ||
| CDS seq | CCGCTGGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGCGGGAGGCGAGGGTTACTCGGGATACGGCGGCCCGAGAGGAGATGGCAGCAGGTTGCAACAGGCGTTCCATGGTTTCAGGGCTCCACACCCTCCGGGTGACGCCGAGCCGGGGAGTATCGCCGTCTTGGAGAACCTAGGCCTCCTATCGCCAAATCTACGCCCATCAACGAGACCTATCAGCTGCGCTGGGATTACTTCCGAGGGGAATAATAGAAATGGCTGGAGAGACTTGATGAAGATGGATAGGTGGGTGACTGAACCCTTGGGTGATAGCTGGTTGTTGGCAACTTGGCGTGCAACTTGGTACATCACTCATTACAGGGAGAAGCGCATGCTAGTTGAGATGGAGGAGCTCCTCTGCTTCTTCACGGTAGAACATCACTATCACAGGTAA
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| Protein seq | PLAAAAAAAEAEAGGEGYSGYGGPRGDGSRLQQAFHGFRAPHPPGDAEPGSIAVLENLGLLSPNLRPSTRPISCAGITSEGNNRNGWRDLMKMDRWVTEPLGDSWLLATWRATWYITHYREKRMLVEMEELLCFFTVEHHYHR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0173500 | OsNip_11t0173500-03 | Chr11 | 3634792 | 3638645 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAGCCTATTGCAATTGGACAGTCGTTCGTTCTGCTACTGGTTTTTAGTACTGTGAGTGTTGTCATTTGCTCTGATGGAAATGAGACAGATCGGCTGTCACTGCTTCAGTTCAAACAGGCTATCAGCCTCGACCCACAGCATGCCTTGCTCTCCTGGAATGATAGCACCCATTTCTGCAGCTGGGAAGGTGTCTCATGTAGTTTGAGGTATCCACGTCGTGTCACTTCCCTTGATCTATCTAACAGAGGTTTGGTGGGGCTCATATCTCCTTCACTTGGAAACCTGACATCTCTTGAACACCTCTTCCTGAATACCAATCAACTCAGCGGACAAATCCCTCCGTCACTTGGTCACTTGCATCACCTTCGATCACTTTACTTAGCAAACAACACGCTACAAGGCAACATACCTAGCTTTGCTAATTGTTCTGCTCTCAAAATACTTCATCTAAGCCGCAATCAGATTGTTGGACGTATTCCCAAAAATGTTCATTTACCACCAAGTATTAGTCAACTGATAGTAAACGATAATAACCTTACTGGTACCATCCCCACTTCACTTGGCGATGTTGCGACACTAAATATACTTATTGTTTCATACAATTATATTGAAGGCAGTATCCCGGATGAAATTGGAAAGATGCCTGTCTTGACAAACTTGTATGTGGGTGGAAACAATTTATCTGGTCGATTTCCACTAGCTCTCACAAACATTTCTTCTCTTGTTGAACTGGGACTTGGCTTCAATTATTTTCATGGTGGTCTGCCGCCAAATCTTGGTACTTCTCTACCCAGGCTTCAGGTGCTTGAAATAGCTTCTAATCTCTTTGAAGGACACCTCCCTTATTCCATTTCAAATGCTACTAGTCTTTACACCATAGACTTTTCAAGCAATTATTTCTCTGGGGTGGTGCCAAGTTCCATCGGTATGCTTAAGGAGCTTTCCTTGTTGAATCTTGAGTGGAATCAGTTTGAGTCGTTCAATAATAAAGATTTGGAGTTCCTGCACAGCCTAAGCAATTGCACTGACCTTCAAGTGCTGGCACTGTATGACAATAAACTGAAGGGACAGATACCATATTCATTAGGCAACCTTTCTATCCAGCTTCAGTACCTCTTTCTGGGAAGCAATCAACTATCAGGGGGCTTTCCCTCTGGCATAAGAAACCTTCCCAACCTGATTTCTCTAGGTTTGAATGAAAACCATTTTACCGGGATAGTTCCAGAATGGGTTGGCACACTTGCAAATTTGGAAGGCATATACTTAGATAACAACAAGTTTACAGGTTTTCTTCCATCATCCATATCCAATATATCAAACCTGGAAGATCTCCGCCTTTCCACAAATCTATTTGGAGGAAAAATACCTGCAGGCTTGGGAAAACTCCAAGTCCTTCATCTAATGGAACTTTCTGATAACAATCTCCTTGGCAGCATACCAGAGAGCATTTTCAGCATTCCAACGTTGACACGTTGTATGCTATCTTTCAACAAACTAGACGGGGCACTTCCCACTGAAATTGGCAATGCCAAGCAACTTGGATCTCTGCATCTATCAGCAAATAAGCTTACTGGGCATATTCCTAGCACCTTGAGTAACTGTGATAGTTTGGAAGAACTACACTTAGATCAAAATTTTCTTAATGGAAGCATCCCCACATCATTAGGAAATATGCAAAGCTTAACAGCAGTCAACCTGTCTTATAATGACCTATCAGGATCCATACCAGATTCTCTTGGTAGATTGCAATCTCTTGAGCAACTAGATTTGTCATTCAACAATCTGGTAGGAGAAGTCCCAGGCATAGGGGTTTTCAAGAATGCAACTGCCATACGGTTAAACAGAAATCATGGGCTTTGTAATGGGGCACTGGAGCTGGACCTACCCAGATGCGCTACTATATCTTCTAGTGTTAGTAAGCACAAACCATCTCATCTACTCATGTTTTTTGTCCCATTTGCCAGTGTGGTTTCACTAGCTATGGTCACATGTATCATCCTGTTTTGGAGGAAAAAACAGAAAAAAGAATTTGTCTCGTTACCTTCTTTTGGTAAGAAGTTTCCCAAAGTTTCTTATAGGGATCTAGCTAGGGCAACAGATGGGTTCTCTGCATCCAATTTAATTGGCACCGGAAGATATGGTTCAGTATATATGGGGAAGTTATTTCATAGTAAATGTCCAGTTGCTGTGAAAGTCTTCAATCTTGACATAAGAGGAACACAGAGGAGCTTTATATCAGAATGTAATGCTTTAAGAAATCTTCGGCATCGCAACATTGTACGGATTATAACAGCTTGCTCAACAGTTGATTCGAAAGGAAATGATTTCAAGGCTTTAATTTATGAATTCATGCCCAGAGGTGACCTGTATCAAGTCCTATATTCAACCTGTGCTGATGAAAATTCTTCAACTAGCCATTTTGGTTTGGCCCAAAGGGTTAGCATAGTGATGGATATAGCCAATGCATTGGAGTACCTGCACAATCATAACAAAGGAATTATTGTTCATTGCGATCTGAAGCCTAGCAACATTCTCTTGGATGATAATATGACTGCTCATGTTCGTGACTTTGGCCTTTCAAGGTTTGAAATTTATTCCATGACATCATCTTTTGGTTGCTCAACTTCTTCAGTTGCAATCAGTGGAACCATAGGATATGTTGCTCCAGAATGCGCAGAGAGTGGTCAAGTTTCAACAGCCACAGATGTTTACAGCTTTGGTGTCGTTCTCCTTGAGATATTCATCCGAAGGAGGCCAACAGATGACATGTTTAATGATGGACTGAGCATCGCAAAATTTGCAGAGTTGAACCTCCCTGATAGGGTGTTGCAGATTGTTGATCCCCAGCTGCAGCAAGATCTGGAGACTTGCCAAGAAACCCCGATGGCCATAAAAAAGAAACTCACAGATTGCCTGCTTTCAGTCCTAAGTATTGGTCTTTCTTGTACTAAATCATCCCCGAGTGAACGCAACAGCATGAAGGAGGTGGCTATAGAGTTGCATAGAATTTGGGATGCATATCTCAGAGAAAACTAA
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| Protein seq | MKPIAIGQSFVLLLVFSTVSVVICSDGNETDRLSLLQFKQAISLDPQHALLSWNDSTHFCSWEGVSCSLRYPRRVTSLDLSNRGLVGLISPSLGNLTSLEHLFLNTNQLSGQIPPSLGHLHHLRSLYLANNTLQGNIPSFANCSALKILHLSRNQIVGRIPKNVHLPPSISQLIVNDNNLTGTIPTSLGDVATLNILIVSYNYIEGSIPDEIGKMPVLTNLYVGGNNLSGRFPLALTNISSLVELGLGFNYFHGGLPPNLGTSLPRLQVLEIASNLFEGHLPYSISNATSLYTIDFSSNYFSGVVPSSIGMLKELSLLNLEWNQFESFNNKDLEFLHSLSNCTDLQVLALYDNKLKGQIPYSLGNLSIQLQYLFLGSNQLSGGFPSGIRNLPNLISLGLNENHFTGIVPEWVGTLANLEGIYLDNNKFTGFLPSSISNISNLEDLRLSTNLFGGKIPAGLGKLQVLHLMELSDNNLLGSIPESIFSIPTLTRCMLSFNKLDGALPTEIGNAKQLGSLHLSANKLTGHIPSTLSNCDSLEELHLDQNFLNGSIPTSLGNMQSLTAVNLSYNDLSGSIPDSLGRLQSLEQLDLSFNNLVGEVPGIGVFKNATAIRLNRNHGLCNGALELDLPRCATISSSVSKHKPSHLLMFFVPFASVVSLAMVTCIILFWRKKQKKEFVSLPSFGKKFPKVSYRDLARATDGFSASNLIGTGRYGSVYMGKLFHSKCPVAVKVFNLDIRGTQRSFISECNALRNLRHRNIVRIITACSTVDSKGNDFKALIYEFMPRGDLYQVLYSTCADENSSTSHFGLAQRVSIVMDIANALEYLHNHNKGIIVHCDLKPSNILLDDNMTAHVRDFGLSRFEIYSMTSSFGCSTSSVAISGTIGYVAPECAESGQVSTATDVYSFGVVLLEIFIRRRPTDDMFNDGLSIAKFAELNLPDRVLQIVDPQLQQDLETCQETPMAIKKKLTDCLLSVLSIGLSCTKSSPSERNSMKEVAIELHRIWDAYLREN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.997587 | 1.208267 | 1.330404 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07230 | RBH | 0.612158 | 0.468585 | 0.339462 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0173500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004950 | SBH | 0.623089 | 0.000000 | 0.563668 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004920 | SBH | 0.310265 | 0.0 | 0.101677 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004950 | SBH | 0.351912 | 0.244407 | 1.702016 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004840 | RBH | 0.216128 | 0.044515 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004740 | RBH | 4.526733 | 0.899943 | 2.512842 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0061400 | SBH | 4.575236 | 3.059625 | 1.525088 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004810 | SBH | 0.297846 | 0.021683 | 0.170285 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0061900 | SBH | 4.7170635 | 2.200798 | 1.7117715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004760 | RBH | 0.464186 | 0.118494 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004870 | SBH | 0.120554 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004870 | SBH | 2.079502 | 1.579314 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004780 | SBH | 0.152264 | 0.0 | 0.102352 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004850 | SBH | 0.056974 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004840 | RBH | 0.012716 | 0.072135 | 0.295710 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004810 | SBH | 4.826402 | 0.871399 | 1.661659 |
