Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0277700 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:10213163-10216340 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAAAAAAAAGTGTACATGTTCAGGCAAAAAATAAATAATTTTGTTCGACGTAGAAAAACAATCAAAGAACTACACTGCATGTAAAATGATCTCTCAGATAGAAGCAAGCCTAAAAAGGGAGTGTCCCTGAAGCCAGTAGCCGTTGTAACTTCAACTTCAGATGCTTTGTGTAGCTTACATGAACATATCCTCTCTCTTTTTTTAATGCAAAATGCGCCCCTTATGAAGTAAATTTCATCATATATTCTGTATGGTTCCACAAAAATCATGGAAATGCTGCAGTTTGATCTCATTAAGGGGCTTCTCTTTTTTTTTAATGCAAAATGCGCCCCTTATGATGTAAATTTCATCATATATTCTGTATAGTTCCACAAAAATCATGGAAATGCTGCAATTTGATCTCATCAAGGGGCTTCAGGATAGGAGCAGGTAAACTTCTAGTTGTCATTGCTTGACAAACCTGCTGCATTGTTGGCCGGGATTTTGGGCAGATTTGCAGGCAAGCAAAAGCCACCAGAACAAGCAGGATGATATCCTTCTCTTCGGTGGTCGGCGCCATGATGCGTTGGTCCAGGATATCCTTGAGCTTTGTATGTTGTTCTGTTCGGCAAAAGAACGGTAGCAGAAGATCTCCAGGATGTTTTCCCATCACCACTTCCAGCATAACCACACCAAAGCTATACACATCGCACTTCTCCGTTAACACCATTGTAGATGACAGTTCTGTGGCAAAAAAAAAATGTTCTGCTAGTTAAGAAAAAAAACTTTTCTATACTAGTATTTCTTTTTATGAATTAAGTGTCCCTTTGAACTGTAAAAATTCTACAAGATTTTTGTACCGATCAGTTCAGTTCCAGCCGGAATCTAAAAACTTGCCAAGTTACAAAGATATTTTGCTTGATAAATCATGTCACATTGTCATCTTAGCTAAGGATTAAAAAGTATATGTACCTGGGGCTATGTAGCCACATGTCCCTGCAAAGATAGTGCTCCAGCTAGATGAATTGTCCTTCAACTTCTTTGCCATGCCGAAGTCGGATAAATAAGCCTTAAAATCATGGTCTAGCAAGATGTTGCTACTTTTAATATCGCGGTGCACGATCGGATCATCACAATCATGGTGCAAGTAAGAGAGAGCTTGAGCTATGTCCATCACAATAGTGACTCTTTTACACCAATCAAGTTCCTTTGCCAATTCTTGGTCATTCCAAATGGACGCTAAACTTCCTCTTTCGATGAGATCGTATACAAGAAATTTGCACTGTGAATGAGAGCAGTAACCGTGCAACTTGACAATGCGACGGTGCCTGATTTTTGTCAACACTTCAATCTCAGCAAGAAATGCTCCAATGTCAAAGTAATCTTCCATTCTGTGAAGCAGCTTGATGGCAAATACACCTTTTCCTTGGATCTCAGCTCTAAGACAGATCCATAACTTCCAACACCGATGCAGTATTTTTCATCAAAATTTTCTGTTGCGTAAAGTGCATCTTGAAACGCAACCTTTGCATCAAAGTTCCATATGGAAACGAAGTCTCCAGGGATGATTTCTTTGCCCTTTTTTGCAAGTTTTCTTCTCCAACAAACCACTGTGATGCTTCCACCCACGAGCCAGATGCAAGAAAACATTGCAAAGGCAAGAAGTAGCCTCGGAACAAGATGTTTACTGTCGGAATTTTCATTTGTATGTAAACTGTCAGGATTTGGATTTGATGGTTGACATGGTGTCAAGCCATATAATGGATCACCACAGATACCTGTATTATGGTCTAGTGAAACTACAGAAGAGGCTTCAGTTGTGTAGAAACCAAAAAATCTGCCGCCCAAACTGTTGTATGATAAATTCAGCTCAAGTAATCGGTAAAGCATCATGAAAGTCATTGGTATGGCACCACTTAAATTATTTCTGCTCAAATCCAACTCAGTTAGGTCGGTACAATACCCAAGCTCTTCTGGTATTGGTCCTGTCAGTAAGTTGTTTCGCAGGCGCAACAAGGACAAATGGTGAAACTGTCCTATCTGAGGTGGAATGCTTCCCGTAAACTGATTGCTGCTTAGATCTAGAACAAAAAGATTACGTAGAAATCCTAGTTCTGGTGGCAGTATAGCATTTAGCACATTGGACTCAAGTTTCAGTGTTATTAAAGATATAAGTTTCGAAAAGGTTGAAGGGATGGGGCCAATGATTCGGTTGTTGGAAAGATCCATGTTTTGTAAGCTCGTTAGATTTCCTATACTTTCAGGAATGGAACCCGTGATTTCATTTGTGGAGAGATACAATTTTATTAAACTCCTTAAATTTCCTATACTTTCAGGAATGAAACCCGTGATTTCATTTATGGAGAGATACAATTCTATTAAACTCAAATTTCCTATACTTTCAGGAATAAAACCCGTGATTTCATTTGTGGAGAGATCCAAGGACTTTAAACTTGTTAGATTCCCTATGGTTGTAGGTATGGAGCCATTGATATTATTATGATCCAGATCTAGCGCAACTAAACTATGAAGCATCCCTATCTCACGTGGAATATGACCAAAAAGATTGTTAAATCCAAGATCTAGAAAATACAATCTAGCCAGGTTTCCCAAACTGGAAGGTATTGGGCCAGTTAAGCTGTTGTGGCTTAAATCAAGGTACTGCAAGTTATGTAATGTGTCAGGCAAGCAACTGAGTATCCCTTGTGACAAATAATTGTTAGAAAGCTCAAGGAATCCTAGGTTCGTAAGATTACCTATCGATGGCGGGATGGATCCAGTGAGCTTATTGTTAGAGAGATCCAAGTACGAGAGCTCAGCAAGACGACCAATATCAGACGGAATTGGTCCATAGAGAGAGTTAATGCTAAGGTCGAGAAAGACAAGATGAGGCAATTGTGCAAATCGGAGCTTGCTCAAACCACCGGAGATGTTACATGAGAAAAGTGTAATGTTTGTCACAACTAGGATGGCATCACGCTCATGGCCACGGCGCACCTTGTAGCTGCAGTATATGCCTGACCAGTTGCATGGGCTGGTTGCGTTGCTCCATTCCTCTAGCCCGCAGTAGGAGAGATCGCCCCTTAGACCAGATTTCCATTGGAGAAGTGCTTCAGCTTGGCGATCCAACGCAGGATTTGCAATTGCAAGGCAGGAAAGACACTGCAGCGAAATCAGCAGAACCAGCAATAGCTCCTG
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| CDS seq | CAGGAGCTATTGCTGGTTCTGCTGATTTCGCTGCAGTGTCTTTCCTGCCTTGCAATTGCAAATCCTGCGTTGGATCGCCAAGCTGAAGCACTTCTCCAATGGAAATCTGGTCTAAGGGGCGATCTCTCCTACTGCGGGCTAGAGGAATGGAGCAACGCAACCAGCCCATGCAACTGGTCAGGCATATACTGCAGCTACAAGGTGCGCCGTGGCCATGAGCGTGATGCCATCCTAGTTGTGACAAACATTACACTTTTCTCATGTAACATCTCCGGTGGTTTGAGCAAGCTCCGATTTGCACAATTGCCTCATCTTGTCTTTCTCGACCTTAGCATTAACTCTCTCTATGGACCAATTCCGTCTGATATTGGTCGTCTTGCTGAGCTCTCGTACTTGGATCTCTCTAACAATAAGCTCACTGGATCCATCCCGCCATCGATAGGTAATCTTACGAACCTAGGATTCCTTGAGCTTTCTAACAATTATTTGTCACAAGGGATACTCAGTTGCTTGCCTGACACATTACATAACTTGCAGTACCTTGATTTAAGCCACAACAGCTTAACTGGCCCAATACCTTCCAGTTTGGGAAACCTGGCTAGATTGTATTTTCTAGATCTTGGATTTAACAATCTTTTTGGTCATATTCCACGTGAGATAGGGATGCTTCATAGTTTAGTTGCGCTAGATCTGGATCATAATAATATCAATGGCTCCATACCTACAACCATAGGGAATCTAACAAGTTTAAAGTCCTTGGATCTCTCCACAAATGAAATCACGGGTTTTATTCCTGAAAGTATAGGAAATTTGAGTTTAATAGAATTGTATCTCTCCATAAATGAAATCACGGGTTTCATTCCTGAAAGTATAGGAAATTTAAGGAGTTTAATAAAATTGTATCTCTCCACAAATGAAATCACGGGTTCCATTCCTGAAAGTATAGGAAATCTAACGAGCTTACAAAACATGGATCTTTCCAACAACCGAATCATTGGCCCCATCCCTTCAACCTTTTCGAAACTTATATCTTTAATAACACTGAAACTTGAGTCCAATGTGCTAAATGCTATACTGCCACCAGAACTAGGATTTCTACGTAATCTTTTTGTTCTAGATCTAAGCAGCAATCAGTTTACGGGAAGCATTCCACCTCAGATAGGACAGTTTCACCATTTGTCCTTGTTGCGCCTGCGAAACAACTTACTGACAGGACCAATACCAGAAGAGCTTGGGTATTGTACCGACCTAACTGAGTTGGATTTGAGCAGAAATAATTTAAGTGGTGCCATACCAATGACTTTCATGATGCTTTACCGATTACTTGAGCTGAATTTATCATACAACAGTTTGGGCGGCAGATTTTTTGGTTTCTACACAACTGAAGCCTCTTCTGTAGTTTCACTAGACCATAATACAGGTATCTGTGGTGATCCATTATATGGCTTGACACCATGTCAACCATCAAATCCAAATCCTGACAGTTTACATACAAATGAAAATTCCGACAGTAAACATCTTGTTCCGAGGCTACTTCTTGCCTTTGCAATGTTTTCTTGCATCTGGCTCGTGGGTGGAAGCATCACAGTGGTTTGTTGGAGAAGAAAACTTGCAAAAAAGGGCAAAGAAATCATCCCTGGAGACTTCGTTTCCATATGGAACTTTGATGCAAAGGTTGCGTTTCAAGATGCACTTTACGCAACAGAAAATTTTGATGAAAAATACTGCATCGGTGTTGGAAGTTATGGATCTGTCTTAGAGCTGAGATCCAAGGAAAAGGTGTATTTGCCATCAAGCTGCTTCACAGAATGGAAGATTACTTTGACATTGGAGCATTTCTTGCTGAGATTGAAGTGTTGA
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| Protein seq | QELLLVLLISLQCLSCLAIANPALDRQAEALLQWKSGLRGDLSYCGLEEWSNATSPCNWSGIYCSYKVRRGHERDAILVVTNITLFSCNISGGLSKLRFAQLPHLVFLDLSINSLYGPIPSDIGRLAELSYLDLSNNKLTGSIPPSIGNLTNLGFLELSNNYLSQGILSCLPDTLHNLQYLDLSHNSLTGPIPSSLGNLARLYFLDLGFNNLFGHIPREIGMLHSLVALDLDHNNINGSIPTTIGNLTSLKSLDLSTNEITGFIPESIGNLSLIELYLSINEITGFIPESIGNLRSLIKLYLSTNEITGSIPESIGNLTSLQNMDLSNNRIIGPIPSTFSKLISLITLKLESNVLNAILPPELGFLRNLFVLDLSSNQFTGSIPPQIGQFHHLSLLRLRNNLLTGPIPEELGYCTDLTELDLSRNNLSGAIPMTFMMLYRLLELNLSYNSLGGRFFGFYTTEASSVVSLDHNTGICGDPLYGLTPCQPSNPNPDSLHTNENSDSKHLVPRLLLAFAMFSCIWLVGGSITVVCWRRKLAKKGKEIIPGDFVSIWNFDAKVAFQDALYATENFDEKYCIGVGSYGSVLELRSKEKVYLPSSCFTEWKITLTLEHFLLRLKC |
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| Function | Probable leucine-rich repeat receptor-like protein kinase At1g35710 [UniProtKB/Swiss-Prot:Q9LP24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0277700 | OsNip_02t0277700-01 | Chr02 | 10213163 | 10216340 | - | RAP2018-11-26 | ||
| CDS seq | CAGGAGCTATTGCTGGTTCTGCTGATTTCGCTGCAGTGTCTTTCCTGCCTTGCAATTGCAAATCCTGCGTTGGATCGCCAAGCTGAAGCACTTCTCCAATGGAAATCTGGTCTAAGGGGCGATCTCTCCTACTGCGGGCTAGAGGAATGGAGCAACGCAACCAGCCCATGCAACTGGTCAGGCATATACTGCAGCTACAAGGTGCGCCGTGGCCATGAGCGTGATGCCATCCTAGTTGTGACAAACATTACACTTTTCTCATGTAACATCTCCGGTGGTTTGAGCAAGCTCCGATTTGCACAATTGCCTCATCTTGTCTTTCTCGACCTTAGCATTAACTCTCTCTATGGACCAATTCCGTCTGATATTGGTCGTCTTGCTGAGCTCTCGTACTTGGATCTCTCTAACAATAAGCTCACTGGATCCATCCCGCCATCGATAGGTAATCTTACGAACCTAGGATTCCTTGAGCTTTCTAACAATTATTTGTCACAAGGGATACTCAGTTGCTTGCCTGACACATTACATAACTTGCAGTACCTTGATTTAAGCCACAACAGCTTAACTGGCCCAATACCTTCCAGTTTGGGAAACCTGGCTAGATTGTATTTTCTAGATCTTGGATTTAACAATCTTTTTGGTCATATTCCACGTGAGATAGGGATGCTTCATAGTTTAGTTGCGCTAGATCTGGATCATAATAATATCAATGGCTCCATACCTACAACCATAGGGAATCTAACAAGTTTAAAGTCCTTGGATCTCTCCACAAATGAAATCACGGGTTTTATTCCTGAAAGTATAGGAAATTTGAGTTTAATAGAATTGTATCTCTCCATAAATGAAATCACGGGTTTCATTCCTGAAAGTATAGGAAATTTAAGGAGTTTAATAAAATTGTATCTCTCCACAAATGAAATCACGGGTTCCATTCCTGAAAGTATAGGAAATCTAACGAGCTTACAAAACATGGATCTTTCCAACAACCGAATCATTGGCCCCATCCCTTCAACCTTTTCGAAACTTATATCTTTAATAACACTGAAACTTGAGTCCAATGTGCTAAATGCTATACTGCCACCAGAACTAGGATTTCTACGTAATCTTTTTGTTCTAGATCTAAGCAGCAATCAGTTTACGGGAAGCATTCCACCTCAGATAGGACAGTTTCACCATTTGTCCTTGTTGCGCCTGCGAAACAACTTACTGACAGGACCAATACCAGAAGAGCTTGGGTATTGTACCGACCTAACTGAGTTGGATTTGAGCAGAAATAATTTAAGTGGTGCCATACCAATGACTTTCATGATGCTTTACCGATTACTTGAGCTGAATTTATCATACAACAGTTTGGGCGGCAGATTTTTTGGTTTCTACACAACTGAAGCCTCTTCTGTAGTTTCACTAGACCATAATACAGGTATCTGTGGTGATCCATTATATGGCTTGACACCATGTCAACCATCAAATCCAAATCCTGACAGTTTACATACAAATGAAAATTCCGACAGTAAACATCTTGTTCCGAGGCTACTTCTTGCCTTTGCAATGTTTTCTTGCATCTGGCTCGTGGGTGGAAGCATCACAGTGGTTTGTTGGAGAAGAAAACTTGCAAAAAAGGGCAAAGAAATCATCCCTGGAGACTTCGTTTCCATATGGAACTTTGATGCAAAGGTTGCGTTTCAAGATGCACTTTACGCAACAGAAAATTTTGATGAAAAATACTGCATCGGTGTTGGAAGTTATGGATCTGTCTTAGAGCTGAGATCCAAGGAAAAGGTGTATTTGCCATCAAGCTGCTTCACAGAATGGAAGATTACTTTGACATTGGAGCATTTCTTGCTGAGATTGAAGTGTTGA
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| Protein seq | QELLLVLLISLQCLSCLAIANPALDRQAEALLQWKSGLRGDLSYCGLEEWSNATSPCNWSGIYCSYKVRRGHERDAILVVTNITLFSCNISGGLSKLRFAQLPHLVFLDLSINSLYGPIPSDIGRLAELSYLDLSNNKLTGSIPPSIGNLTNLGFLELSNNYLSQGILSCLPDTLHNLQYLDLSHNSLTGPIPSSLGNLARLYFLDLGFNNLFGHIPREIGMLHSLVALDLDHNNINGSIPTTIGNLTSLKSLDLSTNEITGFIPESIGNLSLIELYLSINEITGFIPESIGNLRSLIKLYLSTNEITGSIPESIGNLTSLQNMDLSNNRIIGPIPSTFSKLISLITLKLESNVLNAILPPELGFLRNLFVLDLSSNQFTGSIPPQIGQFHHLSLLRLRNNLLTGPIPEELGYCTDLTELDLSRNNLSGAIPMTFMMLYRLLELNLSYNSLGGRFFGFYTTEASSVVSLDHNTGICGDPLYGLTPCQPSNPNPDSLHTNENSDSKHLVPRLLLAFAMFSCIWLVGGSITVVCWRRKLAKKGKEIIPGDFVSIWNFDAKVAFQDALYATENFDEKYCIGVGSYGSVLELRSKEKVYLPSSCFTEWKITLTLEHFLLRLKC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.347361 | 0.606831 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0534166 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g17710 | RBH | 0.0 | 0.242447 | 0.149860 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0277700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012250 | RBH | 0.0 | 0.0 | 0.492397 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012410 | RBH | 0.088016 | 0.0 | 0.472396 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012260 | RBH | 0.000000 | 0.0 | 0.514051 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0012000 | RBH | 0.0 | 0.0 | 1.326172 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0158700 | RBH | 0.409061 | 0.4002855 | 1.0257465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0011840 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0171200 | RBH | 0.250536 | 0.462533 | 2.4877495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004180 | SBH | 0.043297 | 0.057747 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003980 | SBH | 0.070042 | 4.234505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004260 | SBH | 3.191976 | 29.049385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0012040 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012420 | RBH | 0.0 | 0.0 | 0.365815 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004010 | SBH | 0.630622 | 3.130005 | 0.941510 |
