Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0534166 | OGI:04080300 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:26703331-26705217 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGAGGCTGCTCGGAGTCTCCCTCCTCGTCGCGGGGCTCGGCTGCGCGCTGCTCGTCGCGCCCTCGGAATCAGCTGCAGATGACGGTATCAATTGCCCTTCCCATGTGTATTGTATGTATCTATTTTTCCATCTTTTGTGCCGTTCGTTTCTTGAGAAGTTGTTGCGTTGTTGTTGTTGTTGCGCAGTATCTGCGCTTCTTGCTTTCAAGAAGGCCATTTTCGAGGACCCTCTCGCCAAGCTGTCGGACTGGAACTCCAAGGATGAGAATCCTTGCGGCTGGACAGGGGTGGGGTGCTCGCCGTTCGACAGCCGCGTGGTGACTCTGTAAGAACTGGTTCCGCTTGTTCTCCTGTTGGTTTTTTTCTTTCTTTTCGTTGCATCACTTTAAAACATCATGCGGCTGAGATAGAACTTTAAGTTTTTGTTTAAGCAATCCACCATTTCTCGCGGAGTATTTGTGCATGCCCTGTTTTGGTTCATGTCTTGCACGGATGGAAGAAGTTTTTTCAGTCATAGGTTATCCTCTTTCAGAGTTTTTTAATTTTTTTTTAGAAATAATGGAATAACATTCCAGCTCTTTCAGAGCTTCTTGAACATGCACTTTCTCCTATGAAAATTAAAAACTGGCTGGAGGCCTCTCTATAACAACAGCAAGTCAGAATGATGCATGTTCTTTCAGAGAACAGTGGGCCTTAAGTTTTCTGGCTGCACCACAAGACATCCAGCTGGAAGCTATCATAGAGTTTTACCTTCTTTTATTTGTTTTCTCTTATGTTCAGTTGACTCAAGAAGCCCCAACAGGGAAAGAAGAGATTATGGATTTGTGGTCCCTAGGAACAAAAAAAAAAATCAATCCAACAGATTTCAGTTATCTATTACAATAAATATAATCCAAGTGGTGTTTATCCAAACACCAAAGTCAGATAAAATGAATATATAGTTTTATTTACACACGTTTTCTGTTCAAGTAAAAAATCACTAAATGTTCAGCATTGCAGAAATTTCAGTTGGTGTGTATTCCCTCGTCCCAAAATATAGCAACCTAGGACCGGATGGGACGTATCCTAGTACTACGAATCTGGACAGGGGACATGTCAAGATTCGTAGTACTAAAATACGTCCCATCCGGTACTAGTTTGCTATATTCTGGGACGGAGGAAGTACATTTTATTGTACATTTTATTGATAAACTTCCCTCTTCTCTATTGTAAAGTATCTTATTATTTACACGTTGTTATCCAGGGAATTGGCAAATTCATCGCTCAAAGGATTCCTGGCACTAGAGATTGAATCCCTGAGTTCTTTACAAAAACTGTATGTACTTATATGTCCATTTGATTCAATAATAAACTTGACCTGTTAGCCACTACTGAACTGATAGCAATCTTGGTGAACTTCTTGCAGCATATTGGATCACAATACACTCATGGGTCCAATACCAAAAGGAATTGGCAAGCTAAGAAATCTAATTATGTTGAACCTCAGCACCAATCAACTCGATGGGCCCATTCCCATTGAGATTGGTGACATGCCAAAAATCTCAAAAATGTACTGACCAAGAAGCTATAATCAACTTATATTTCTTCAGAATATGTTCAAAATTCATAACTCATCTATTGCCTTATGCCCTAGAGACCTTCGTGCGAATCGGTTGGATGGTGCTATCCCCCCTGAGATTGGTAATTTGACGAGCCTCACTGAGCTACAATTGAGCAATAATAGCCTTACAGGGACTATTCCTGGAAGTAATGATTCAAGCATGTAAGTAATACTTTTCAGAGTTCTCCAAATTCAAAGTCAAGTAACTGTTTTCAGCATGCATAAACTGGAAATGCATGGAAGAACCAAATAATGTTTCTTCTATAGGAAGGAATTAAAGTGA
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| CDS seq | ATGGCGAGGCTGCTCGGAGTCTCCCTCCTCGTCGCGGGGCTCGGCTGCGCGCTGCTCGTCGCGCCCTCGGAATCAGCTGCAGATGACGTATCTGCGCTTCTTGCTTTCAAGAAGGCCATTTTCGAGGACCCTCTCGCCAAGCTGTCGGACTGGAACTCCAAGGATGAGAATCCTTGCGGCTGGACAGGGGTGGGGTGCTCGCCGTTCGACAGCCGCGTGGTGACTCTGGAATTGGCAAATTCATCGCTCAAAGGATTCCTGGCACTAGAGATTGAATCCCTGAGTTCTTTACAAAAACTCATATTGGATCACAATACACTCATGGGTCCAATACCAAAAGGAATTGGCAAGCTAAGAAATCTAATTATGTTGAACCTCAGCACCAATCAACTCGATGGGCCCATTCCCATTGAGATTGGTGACATGCCAAAAATCTCAAAAATAGACCTTCGTGCGAATCGGTTGGATGGTGCTATCCCCCCTGAGATTGGTAATTTGACGAGCCTCACTGAGCTACAATTGAGCAATAATAGCCTTACAGGGACTATTCCTGGAAGTAATGATTCAAGCATGAAGGAATTAAAGTGA
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| Protein seq | MARLLGVSLLVAGLGCALLVAPSESAADDVSALLAFKKAIFEDPLAKLSDWNSKDENPCGWTGVGCSPFDSRVVTLELANSSLKGFLALEIESLSSLQKLILDHNTLMGPIPKGIGKLRNLIMLNLSTNQLDGPIPIEIGDMPKISKIDLRANRLDGAIPPEIGNLTSLTELQLSNNSLTGTIPGSNDSSMKELK |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g63430 [UniProtKB/Swiss-Prot:C0LGH8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0534166 | OsNip_04t0534166-00 | Chr04 | 26703331 | 26705217 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGAGGCTGCTCGGAGTCTCCCTCCTCGTCGCGGGGCTCGGCTGCGCGCTGCTCGTCGCGCCCTCGGAATCAGCTGCAGATGACGTATCTGCGCTTCTTGCTTTCAAGAAGGCCATTTTCGAGGACCCTCTCGCCAAGCTGTCGGACTGGAACTCCAAGGATGAGAATCCTTGCGGCTGGACAGGGGTGGGGTGCTCGCCGTTCGACAGCCGCGTGGTGACTCTGGAATTGGCAAATTCATCGCTCAAAGGATTCCTGGCACTAGAGATTGAATCCCTGAGTTCTTTACAAAAACTCATATTGGATCACAATACACTCATGGGTCCAATACCAAAAGGAATTGGCAAGCTAAGAAATCTAATTATGTTGAACCTCAGCACCAATCAACTCGATGGGCCCATTCCCATTGAGATTGGTGACATGCCAAAAATCTCAAAAATAGACCTTCGTGCGAATCGGTTGGATGGTGCTATCCCCCCTGAGATTGGTAATTTGACGAGCCTCACTGAGCTACAATTGAGCAATAATAGCCTTACAGGGACTATTCCTGGAAGTAATGATTCAAGCATGAAGGAATTAAAGTGA
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| Protein seq | MARLLGVSLLVAGLGCALLVAPSESAADDVSALLAFKKAIFEDPLAKLSDWNSKDENPCGWTGVGCSPFDSRVVTLELANSSLKGFLALEIESLSSLQKLILDHNTLMGPIPKGIGKLRNLIMLNLSTNQLDGPIPIEIGDMPKISKIDLRANRLDGAIPPEIGNLTSLTELQLSNNSLTGTIPGSNDSSMKELK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0635600 | RBH | 0.644365 | 0.616778 | 1.988041 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g45170 | SBH | 0.000000 | 0.206675 | 0.220219 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0534166 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019210 | RBH | 0.250173 | 18.465075 | 7.961412 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019990 | RBH | 0.000000 | 2.878314 | 4.202378 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019710 | RBH | 0.197623 | 7.386014 | 13.799141 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019430 | RBH | 0.087951 | 0.232958 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019640 | RBH | 0.000000 | 0.000000 | 20.992216 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0420300 | RBH | 0.3483535 | 2.330302 | 0.2768125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018450 | RBH | 0.073557 | 1.009289 | 1.709794 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0420600 | RBH | 1.4627265 | 6.4065645 | 0.2615825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018920 | RBH | 0.003662 | 0.270175 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018770 | RBH | 0.197257 | 27.203178 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018900 | RBH | 0.000000 | 26.699585 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019270 | RBH | 0.534934 | 1.201555 | 1.513428 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019440 | RBH | 0.082115 | 8.156088 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018720 | RBH | 0.283235 | 4.341980 | 3.325762 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018670 | RBH | 0.181856 | 16.725006 | 10.295066 |
