Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0016280 | OGI:10048420 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:21081075-21082439 | ||||||||
| Gene Symbol | PPR11 | ||||||||||
| DNA seq | tcaaacataggttctgaaacatccgaagtgcatcatcagtgagtttgtttttgcaaagtccatgaggattatgttgtatgtgctaagttcaagctgcgttccactttcggtaatcctggcatatagttcttttgcagcagcagttcttctggtgcgaaataaaccatgcagaattatgttatatgtaataatatcaggattaacaccattgctttccatctccttgaaaagagctaatgcgtcctccattctattaattttacagtaaccattaatcaaagtgctatatgtaacactatcaggtttcaacccaactgagaccatgccagtgagtaacttcattgctccatccatcttaccagctaagcaatatccatcgatgagtgtactgtatgtaatgacatcaggattcacaccaatatgtcccaacaggtcaaagagttttttagattctataaccctcccttctttgcaaagactgtccaatattgtattaaaaaacacaatgttgggattgataccttgatccaatatttcaaaaattaactcctcggccttctcccatttgtcataggtacagagagcatgaattagggaggtataaacaacaacgttaggtgtcagtcctttatcaatcatctgctcaaaattaagcatagcatcatctagtctacctaacttgcaaagtccatctatcactgttctatagttcactgcgttcggagtcaatccttgctgcctcattttgctgaatacaagcacgacctcgtctactttttcttgtttagtgtatgcacatattaatatgttgaagacatgatgatcaagttgcatgccattttgtaccatcaaagctaagagatcatgcatctcaacaagagctcctttggaagcatacccatgaagcagggtaccataggtagtaatatcaggcttgagacccctcttgaccatagaatcaaaaatctttctggcttctgtgcattttccgttcttgcagagatagtccatcaacgagttataagtaacaacatctggttcaataccatcactgcacatctttctgaaaataccaatagccttttccgactgtcctgaagaacaatatccatgcataatactattatatgtgaagcaattgggcataaccatcactgtaagtacctccgtggccctgtccatagcttgagccttgcttaaggcagcaatgatagagttgtaagtcacagcatctggagaaaccctccggtccagcatttcatggtatgtgatgtaagctttgtccacatcaccctctttgaagagaccatcaatgatggtattatacgacaccacatcaggtgggcagcgaccatcatcagccat
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| CDS seq | atggctgatgatggtcgctgcccacctgatgtggtgtcgtataataccatcattgatggtctcttcaaagagggtgatgtggacaaagcttacatcacataccatgaaatgctggaccggagggtttctccagatgctgtgacttacaactctatcattgctgccttaagcaaggctcaagctatggacagggccacggaggtacttacagtgatggttatgcccaattgcttcacatataatagtattatgcatggatattgttcttcaggacagtcggaaaaggctattggtattttcagaaagatgtgcagtgatggtattgaaccagatgttgttacttataactcgttgatggactatctctgcaagaacggaaaatgcacagaagccagaaagatttttgattctatggtcaagaggggtctcaagcctgatattactacctatggtaccctgcttcatgggtatgcttccaaaggagctcttgttgagatgcatgatctcttagctttgatggtacaaaatggcatgcaacttgatcatcatgtcttcaacatattaatatgtgcatacactaaacaagaaaaagtagacgaggtcgtgcttgtattcagcaaaatgaggcagcaaggattgactccgaacgcagtgaactatagaacagtgatagatggactttgcaagttaggtagactagatgatgctatgcttaattttgagcagatgattgataaaggactgacacctaacgttgttgtttatacctccctaattcatgctctctgtacctatgacaaatgggagaaggccgaggagttaatttttgaaatattggatcaaggtatcaatcccaacattgtgttttttaatacaatattggacagtctttgcaaagaagggagggttatagaatctaaaaaactctttgacctgttgggacatattggtgtgaatcctgatgtcattacatacagtacactcatcgatggatattgcttagctggtaagatggatggagcaatgaagttactcactggcatggtctcagttgggttgaaacctgatagtgttacatatagcactttgattaatggttactgtaaaattaatagaatggaggacgcattagctcttttcaaggagatggaaagcaatggtgttaatcctgatattattacatataacataattctgcatggtttatttcgcaccagaagaactgctgctgcaaaagaactatatgccaggattaccgaaagtggaacgcagcttgaacttagcacatacaacataatcctcatggactttgcaaaaacaaactcactgatgatgcacttcggatgtttcagaacctatgtttga
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| Protein seq | MADDGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRATEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKTNSLMMHFGCFRTYV |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0016280 | OsNaBo_10g0016280.01 | Chr10 | 21081075 | 21082439 | - | NAM | ||
| CDS seq | atggctgatgatggtcgctgcccacctgatgtggtgtcgtataataccatcattgatggtctcttcaaagagggtgatgtggacaaagcttacatcacataccatgaaatgctggaccggagggtttctccagatgctgtgacttacaactctatcattgctgccttaagcaaggctcaagctatggacagggccacggaggtacttacagtgatggttatgcccaattgcttcacatataatagtattatgcatggatattgttcttcaggacagtcggaaaaggctattggtattttcagaaagatgtgcagtgatggtattgaaccagatgttgttacttataactcgttgatggactatctctgcaagaacggaaaatgcacagaagccagaaagatttttgattctatggtcaagaggggtctcaagcctgatattactacctatggtaccctgcttcatgggtatgcttccaaaggagctcttgttgagatgcatgatctcttagctttgatggtacaaaatggcatgcaacttgatcatcatgtcttcaacatattaatatgtgcatacactaaacaagaaaaagtagacgaggtcgtgcttgtattcagcaaaatgaggcagcaaggattgactccgaacgcagtgaactatagaacagtgatagatggactttgcaagttaggtagactagatgatgctatgcttaattttgagcagatgattgataaaggactgacacctaacgttgttgtttatacctccctaattcatgctctctgtacctatgacaaatgggagaaggccgaggagttaatttttgaaatattggatcaaggtatcaatcccaacattgtgttttttaatacaatattggacagtctttgcaaagaagggagggttatagaatctaaaaaactctttgacctgttgggacatattggtgtgaatcctgatgtcattacatacagtacactcatcgatggatattgcttagctggtaagatggatggagcaatgaagttactcactggcatggtctcagttgggttgaaacctgatagtgttacatatagcactttgattaatggttactgtaaaattaatagaatggaggacgcattagctcttttcaaggagatggaaagcaatggtgttaatcctgatattattacatataacataattctgcatggtttatttcgcaccagaagaactgctgctgcaaaagaactatatgccaggattaccgaaagtggaacgcagcttgaacttagcacatacaacataatcctcatggactttgcaaaaacaaactcactgatgatgcacttcggatgtttcagaacctatgtttga
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| Protein seq | MADDGRCPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRATEVLTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKTNSLMMHFGCFRTYV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.059027 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495400 | SBH | 0.828533 | 0.622825 | 0.833279 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35790 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015890 | SBH | 0.092648 | 0.0 | 0.752496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016120 | RBH | 0.160919 | 0.0 | 0.161049 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015510 | SBH | 0.0 | 0.0 | 0.387860 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015910 | SBH | 0.0 | 0.021450 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015800 | SBH | 0.0 | 0.0 | 0.667132 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0312000 | SBH | 0.739509 | 1.794182 | 1.7923905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015930 | SBH | 0.037830 | 0.006792 | 0.266487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336700 | SBH | 14.8875525 | 14.265312 | 27.1701235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015700 | SBH | 0.051787 | 0.129545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015580 | SBH | 0.058650 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016090 | RBH | 1.382853 | 1.473791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015840 | RBH | 0.141397 | 0.0 | 0.060239 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016490 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016100 | RBH | 0.161260 | 0.0 | 0.258236 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016160 | RBH | 0.174723 | 0.000000 | 0.000000 |
