Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_10G0312000 | OGI:10048420 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr10:20979812-20982154 | ||||||||
| Gene Symbol | RF1, Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PPR11 | ||||||||||
| DNA seq | CTACGATATTCTTGATATTTGCTCCCAGACGATTGGGGAAGATTCTAACAAGAAGGAAGCAGTGGATGCTTCGAGGGAGAAGTGCTTCTCATCAATCATGAACAGGTAAGTGCCAGCCCTGGTTATATCACCCCTCTGTAACAGTTTCCTAACAATGGAATTTAGCATGCGGGAGTCGGCGGAACAGCCATTCTCCTCCATTGAAAGAAATAGATCATCCAATTCTTCTAGCGACCCCTGCTCTATAAGATTTTCTGCCATTAAACTGTAGGTCCAAACATCTGGCACTAAACCGTTAGCCGAGTGAGCAGCAAACAAATCCTTAGCTTCATCCATTCTTCCACATTTAAGTAAGGCACCAATCATAATGTTAAAAGTCCTAGTCTCCAGCTGTAAATCCGTCAAACATAGGTTCTGAAACATTCGAAGTGCCTCGTCAGTGAGATTGTTTTTGCAAAGTCCATGAAGGATTATGTTGTACGTGCTAAGTTCAAGCTGTGTTCCACTTTTGGTAATACTGACATAGAGTTCTTTTGCAGCAGCAGTTCTTCTGGTTTGAAATAAACCTTGCAGAATTATGTTATACGTAATAATATTAGGACTAACACCACTGCTCACCATCTCTTTGAAAAGAGCTAATGCGTCATCCATCCTGCTAACTCTACAGTAGCCATTAATCAAGGTGCCATAGGTAACAATATCAGGTTTCACCCCAACTGAGACCATGCTGGCAAGTAACTTCGTTGCTTCATCCATCTTACCAGCTAAGCAGCATCCATCGATTAGTGTATTGTACGTAATGATATCGGGCTTCACACCAATTCGTACCATCAAGTCAAAGAGTTTTTCAGATTCTATAACCCTCCCTTCTTTGCAATGACTGTCAATTATTGAATTAAAGAAAATAGTGTTCAGACAGATGCCTCGATCCAACATTTCAAGAATTAACTCTTCAGCCTTGTCCCATTTGTCACAGGTGCACAGACCATGAATTAGGGAGGTATACACAATAATGTTAGGGGTTAGTCCTTCATCGATCATCTGCTCAAAATAAAGCATAGCATCGTCTACACTGCCTGACTTGCAAAGTATGCCTATAACTGCTCCATACGTCACTACATTCGGATTCAATCCATGCTGCCTCATTTTGCTGAATACAAGCATTGCCTCATCTACTTTCTCTTGTTTAGCGTATGCACATATTAGAATGTTGAATACATGATGATCAGGTTGGATACCATTTCGTACCATCAAATCCAAGAGAGCATGCATCTCAACAAGGGCTCCTTTGGTAGCATACCCCTGAAGCAGGGTACCATAGGTAGCAATATCAGGCTCTAGGCCCCTCTTGGTCATAGAATCGAAAATCTTTCTAGCTTCGGTGCATCTTCCATTCTTGCAAAGATAATTCATCAGTGATCTATAAGTAACAACATTTGGTTCGACACCATCACTGCGCATCTTTTTGAGTGTTCCAATAGCCTCTTTTGGCTGCCCTGAAGAGCAATATCCATGCAGAATACTATTATATGTCATGCAATCAGGCATGACACCATTCTTAACCATGGTGTTAAGTACCTCCATGGCTTTGTCCATAGCTTGAGCCTTGCATAACGCAGCAATAATAGAGTTGTAGGTCGCAACATTTGGTGAAATCCTCCGATCAAGCATTTCATGGTATGTAATGTAAGCTTTGTCTGAATCCCCCTCTTTGAAGAAGCCGCCGATGACAGTGGTATACGACACCACATCAGGTGGGCTACCTCCTCCTCGATCATCAGCCATCATGTGCAGCAACTCGAGAGCTTCTTGGCTTCTGTTCTCATCACACAGCCCGTTCAGAAGATTATTGTAGGAGAAGACATTTGGTATGCAACCGAGCTCGGTCATTCTGCGGAGCACTATGTCCATTGCGTCGCTCGTCCTCTTGTCGGCACAGAGGCCCTTGAGCAGAGGAGTGAAGGTGATGGCTTCCACTCTAAATCCCTTCTTAACGACATTGCCCAAGGCCGCGAAACCGAGGTCCAAGCGGCCCGCGCGGCAGCAGCAACCGATGAGAATGCCGTAGGTGCACAAGTCGGGAGTTACCTCGTCGGCGCCGGCTCGGGCCATGCGGTTGTAGCGGGACACGGCGGCCGCGGGGCTGTGACGCGCGACGTCGGCGAGGGCGCGGTTCAAGCCGTAGATCGAGGCGCCCCTGCCACGCCGGAGCAATTCGTCGAACACGTGGCGTGCGTCCTCGGCGCCACTGCCCCCCGCGCGGCCTCCTCGCCCTTGGATCGAGCCCTCCGAGCGTGGGACGCCGCCGCCGCCGCGGGCGCGGGTAGGGACGCGACGCGCCAT
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| CDS seq | ATGGCGCGTCGCGTCCCTACCCGCGCCCGCGGCGGCGGCGGCGTCCCACGCTCGGAGGGCTCGATCCAAGGGCGAGGAGGCCGCGCGGGGGGCAGTGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGGCGTGGCAGGGGCGCCTCGATCTACGGCTTGAACCGCGCCCTCGCCGACGTCGCGCGTCACAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGACGAGGTAACTCCCGACTTGTGCACCTACGGCATTCTCATCGGTTGCTGCTGCCGCGCGGGCCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCGTTAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACTCCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCCGCAGAATGACCGAGCTCGGTTGCATACCAAATGTCTTCTCCTACAATAATCTTCTGAACGGGCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGTTGCTGCACATGATGGCTGATGATCGAGGAGGAGGTAGCCCACCTGATGTGGTGTCGTATACCACTGTCATCGGCGGCTTCTTCAAAGAGGGGGATTCAGACAAAGCTTACATTACATACCATGAAATGCTTGATCGGAGGATTTCACCAAATGTTGCGACCTACAACTCTATTATTGCTGCGTTATGCAAGGCTCAAGCTATGGACAAAGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTGATTGCATGACATATAATAGTATTCTGCATGGATATTGCTCTTCAGGGCAGCCAAAAGAGGCTATTGGAACACTCAAAAAGATGCGCAGTGATGGTGTCGAACCAAATGTTGTTACTTATAGATCACTGATGAATTATCTTTGCAAGAATGGAAGATGCACCGAAGCTAGAAAGATTTTCGATTCTATGACCAAGAGGGGCCTAGAGCCTGATATTGCTACCTATGGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGCTCTCTTGGATTTGATGGTACGAAATGGTATCCAACCTGATCATCATGTATTCAACATTCTAATATGTGCATACGCTAAACAAGAGAAAGTAGATGAGGCAATGCTTGTATTCAGCAAAATGAGGCAGCATGGATTGAATCCGAATGTAGTGACGTATGGAGCAGTTATAGGCATACTTTGCAAGTCAGGCAGTGTAGACGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAACCCCTAACATTATTGTGTATACCTCCCTAATTCATGGTCTGTGCACCTGTGACAAATGGGACAAGGCTGAAGAGTTAATTCTTGAAATGTTGGATCGAGGCATCTGTCTGAACACTATTTTCTTTAATTCAATAATTGACAGTCATTGCAAAGAAGGGAGGGTTATAGAATCTGAAAAACTCTTTGACTTGATGGTACGAATTGGTGTGAAGCCCGATATCATTACGTACAATACACTAATCGATGGATGCTGCTTAGCTGGTAAGATGGATGAAGCAACGAAGTTACTTGCCAGCATGGTCTCAGTTGGGGTGAAACCTGATATTGTTACCTATGGCACCTTGATTAATGGCTACTGTAGAGTTAGCAGGATGGATGACGCATTAGCTCTTTTCAAAGAGATGGTGAGCAGTGGTGTTAGTCCTAATATTATTACGTATAACATAATTCTGCAAGGTTTATTTCAAACCAGAAGAACTGCTGCTGCAAAAGAACTCTATGTCAGTATTACCAAAAGTGGAACACAGCTTGAACTTAGCACGTACAACATAATCCTTCATGGACTTTGCAAAAACAATCTCACTGACGAGGCACTTCGAATGTTTCAGAACCTATGTTTGACGGATTTACAGCTGGAGACTAGGACTTTTAACATTATGATTGGTGCCTTACTTAAATGTGGAAGAATGGATGAAGCTAAGGATTTGTTTGCTGCTCACTCGGCTAACGGTTTAGTGCCAGATGTTTGGACCTACAGTTTAATGGCAGAAAATCTTATAGAGCAGGGGTCGCTAGAAGAATTGGATGATCTATTTCTTTCAATGGAGGAGAATGGCTGTTCCGCCGACTCCCGCATGCTAAATTCCATTGTTAGGAAACTGTTACAGAGGGGTGATATAACCAGGGCTGGCACTTACCTGTTCATGATTGATGAGAAGCACTTCTCCCTCGAAGCATCCACTGCTTCCTTCTTGTTAGAATCTTCCCCAATCGTCTGGGAGCAAATATCAAGAATATCGTAG
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| Protein seq | MARRVPTRARGGGGVPRSEGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIGGFFKEGDSDKAYITYHEMLDRRISPNVATYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYGTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFQTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVWTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLESSPIVWEQISRIS |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_10G0312000 | OsMH63_10T0312000.1 | Chr10 | 20979812 | 20982154 | - | maker | ||
| CDS seq | ATGGCGCGTCGCGTCCCTACCCGCGCCCGCGGCGGCGGCGGCGTCCCACGCTCGGAGGGCTCGATCCAAGGGCGAGGAGGCCGCGCGGGGGGCAGTGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGGCGTGGCAGGGGCGCCTCGATCTACGGCTTGAACCGCGCCCTCGCCGACGTCGCGCGTCACAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGACGAGGTAACTCCCGACTTGTGCACCTACGGCATTCTCATCGGTTGCTGCTGCCGCGCGGGCCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCGTTAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACTCCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCCGCAGAATGACCGAGCTCGGTTGCATACCAAATGTCTTCTCCTACAATAATCTTCTGAACGGGCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGTTGCTGCACATGATGGCTGATGATCGAGGAGGAGGTAGCCCACCTGATGTGGTGTCGTATACCACTGTCATCGGCGGCTTCTTCAAAGAGGGGGATTCAGACAAAGCTTACATTACATACCATGAAATGCTTGATCGGAGGATTTCACCAAATGTTGCGACCTACAACTCTATTATTGCTGCGTTATGCAAGGCTCAAGCTATGGACAAAGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTGATTGCATGACATATAATAGTATTCTGCATGGATATTGCTCTTCAGGGCAGCCAAAAGAGGCTATTGGAACACTCAAAAAGATGCGCAGTGATGGTGTCGAACCAAATGTTGTTACTTATAGATCACTGATGAATTATCTTTGCAAGAATGGAAGATGCACCGAAGCTAGAAAGATTTTCGATTCTATGACCAAGAGGGGCCTAGAGCCTGATATTGCTACCTATGGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGCTCTCTTGGATTTGATGGTACGAAATGGTATCCAACCTGATCATCATGTATTCAACATTCTAATATGTGCATACGCTAAACAAGAGAAAGTAGATGAGGCAATGCTTGTATTCAGCAAAATGAGGCAGCATGGATTGAATCCGAATGTAGTGACGTATGGAGCAGTTATAGGCATACTTTGCAAGTCAGGCAGTGTAGACGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAACCCCTAACATTATTGTGTATACCTCCCTAATTCATGGTCTGTGCACCTGTGACAAATGGGACAAGGCTGAAGAGTTAATTCTTGAAATGTTGGATCGAGGCATCTGTCTGAACACTATTTTCTTTAATTCAATAATTGACAGTCATTGCAAAGAAGGGAGGGTTATAGAATCTGAAAAACTCTTTGACTTGATGGTACGAATTGGTGTGAAGCCCGATATCATTACGTACAATACACTAATCGATGGATGCTGCTTAGCTGGTAAGATGGATGAAGCAACGAAGTTACTTGCCAGCATGGTCTCAGTTGGGGTGAAACCTGATATTGTTACCTATGGCACCTTGATTAATGGCTACTGTAGAGTTAGCAGGATGGATGACGCATTAGCTCTTTTCAAAGAGATGGTGAGCAGTGGTGTTAGTCCTAATATTATTACGTATAACATAATTCTGCAAGGTTTATTTCAAACCAGAAGAACTGCTGCTGCAAAAGAACTCTATGTCAGTATTACCAAAAGTGGAACACAGCTTGAACTTAGCACGTACAACATAATCCTTCATGGACTTTGCAAAAACAATCTCACTGACGAGGCACTTCGAATGTTTCAGAACCTATGTTTGACGGATTTACAGCTGGAGACTAGGACTTTTAACATTATGATTGGTGCCTTACTTAAATGTGGAAGAATGGATGAAGCTAAGGATTTGTTTGCTGCTCACTCGGCTAACGGTTTAGTGCCAGATGTTTGGACCTACAGTTTAATGGCAGAAAATCTTATAGAGCAGGGGTCGCTAGAAGAATTGGATGATCTATTTCTTTCAATGGAGGAGAATGGCTGTTCCGCCGACTCCCGCATGCTAAATTCCATTGTTAGGAAACTGTTACAGAGGGGTGATATAACCAGGGCTGGCACTTACCTGTTCATGATTGATGAGAAGCACTTCTCCCTCGAAGCATCCACTGCTTCCTTCTTGTTAGAATCTTCCCCAATCGTCTGGGAGCAAATATCAAGAATATCGTAG
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| Protein seq | MARRVPTRARGGGGVPRSEGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIGGFFKEGDSDKAYITYHEMLDRRISPNVATYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYGTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFQTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVWTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLESSPIVWEQISRIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.739509 | 1.794182 | 1.7923905 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497432 | SBH | 1.063035 | 0.533988 | 2.623040 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35440 | SBH | 0.438520 | 0.328626 | 0.617832 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497432 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016290 | RBH | 0.346097 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016610 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015540 | SBH | 1.473240 | 0.876703 | 2.494554 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016530 | SBH | 0.0 | 0.043213 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015800 | SBH | 0.0 | 0.0 | 0.667132 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0311300 | SBH | 0.0425095 | 0.435917 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0016190 | SBH | 0.070883 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0334900 | SBH | 1.6322985 | 4.720067 | 10.706966 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015960 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016360 | SBH | 1.725807 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015610 | SBH | 0.118714 | 0.0 | 0.047110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016490 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016100 | RBH | 0.161260 | 0.0 | 0.258236 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016280 | SBH | 0.0 | 0.0 | 0.059027 |
