Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_10g0015800 | OGI:10048420 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr10:20840390-20844276 | ||||||||
| Gene Symbol | PPR454, PPR10, PPR2, Rf4, Rf-4, PPR782a, PPR9, PPR3, PPR458, PPR7, PPR4, RF1, Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PPR11 | ||||||||||
| DNA seq | gatccaacatttaaaaaattaactcctcagccttctcccatttgtcacaggtacaaaaaccatgaattaggggggtatatacaatgatgtcaGgggttagtccttcattgatcatctgctttaaggtaagcactgcatcgtatactctgcctagcttgcagagtacatctatgactgttctgtagttcactgcattcggactcaatccttgctgcctcattttgctgaatacaagcatcgcctcatctactttttcttgtttagcgtacgcacatattagaatgttgaatacatgatgattaggttggataccgttccataccatcaaatccaggagatcatgcatctcaacaagggctcctttggtagcatacccctgaagcagggtacaataggtagtaatatcaggctttaggccacacttggtcatagaattgaaaatctttctagcttccgtgcatcttctgttcttgcaaagataatccatcagcaagttacaagtaacaacatctggttcgacaccatcactgcacatcattttgagaaatccaatagcctctgtcaactgccctgaagagcaatatccgtgcacaatactattatatgtcctgcaattaggcatgacaccattcttaaccatggtgttaagtacctccatggccttgtccatagcttgagccttgcataaggcagcgataatagagctgtaagtcacaacatctggcaaaatcccctggtcaaacatttcatggtatgtagcgtaagctttgtccggatccccctctttgaagaagccattgatgacggtgttgtacaacaccacatcaggtgggcagtcacctccatcatcaggcatcatttggagcagctcgagagcttcttggcttctgttctcatcacacagacccttgagaagaatggtgcaggagaagacatttggtatgcagccgagctgggtcattctgcagagcactatgtccattgcgtcgctcgtcctcttgtcggcacagaggcccttgagcagaggagtgaaggtgatggcttccactctaaatcccttcttaatgacattgtccaagcggcccgcccggcagcagcaaccgatgagaacgctgtaggtgtacaagttgggagttacctcgtcggcgccggctcgggccatgcggttgtagcgggacacggcggccgcggggctgtgacgcgcgacgtcgtcgagggcgcggttcaagccgtagatcgtggcgcccttgccacgccgaagcaattcgtcgaacacgtggcgtgcgtcctcggcgccattgccccccgcgcggCccccCTCGCCCTTGGATCGAGCCCTCCGAGCCAACAGCGCGGGAAGCGGCGCGGCGCGCCATGCCCGCCCTAGCTGACAGGTGCAGCAGCAGCAGCAGCAGCAGCGGCGGCTGCGAGGCCTGACTCCCACACACAGGCACACGTGCCCAGTGCGAAGCTCGCCGATCCGCGCCGTCCTCTGATCTGCGCCGCCCAGATCGAGGCCGCCGCGGGCGCCTGGGGAATCTCAACCCAACCCCAGCCCCccagcacgaatctcaacgtgacacctcccccggcgacgcggcgaagcaaatcctcttccccctcactagtagtatgcccgtgctaacgctacggtgataactaatattacaaatgaaacaaccaaatgacagcgacacaatatatgcttcatcaatggtacatagaacagatagttaggaaaagagcgatagagttattagaaaaaaattaatcaacatgcatccacaatatcatctaagaacaagccgtccattgctatgctatAataaagtacaggtattgctcctctcaaatacacaaaataataaatatctaaaattagcttgacttaagccatccatttcgcctccttctgcagcatctcttcggtctgaacaagtaattcgttcgccgccgatgacatggcggccgccggagggaagagatcggggcggcggcgttggagtgctttgcggcgaaggaaaggaaagaaaaaaggaaaaagtatgaattaccccctgaacttttgcggtcgaccgaattacacccccgaacccgaaaaccagacatttttcaccccaaactttcaataccggacgaattaccccctcgatccaatccagagcggttttgtcctacgtggcgtacacgtggcaatccagtcagcattttcTttttttttaaaaaaaaagtgggacccacatgtcatacgaagcccctcttactctctctcttcactctctctctctctctctcaaagggcagtggcaggaggtgggcggcggcgcgagcagtggcccacctccgccgccgccgtcttcatcatccccacctccgccatcgcgaccaccgccacccccacgccgacgagcacaccgcccgccgccgcgccgatttcctcgccgccaaccgcgcctgtcgcgcccgccgttgccggtcgcgccgccgcccacctcctgccaccgcgctgtgagagagagagagtgaagagagagaggatgagggaatccgtatgacatgtgggtcccacaattaaaaaaatagaaaatgctgctggattgccacgtgtacgccacgtaggacaaaatcgttctggattggatcgagggggtaattcgtccggtattaaaagttcggggtgaacaatgtctggttttcgggttcgggggtgtaattcgatcgaccgcacaagttcaggggggtaattcgtactttttccaaaaaaaagaggagaaaaaaattgggggaagttggaagccgtcgcggtaggagtagtcagtcgtttgtgttgtgtgatcttctaatctatctatctatctaccctataattcaccaactcactcttacacctacgttactcattcatcaaatccaacggaccagaatatctctcgatcatctaacagtccagatcactcctcctCCcccgcgtgcgtgttctctccccaaaacccgctcccctcgccgcctcgcccgctcgctccctccttcgcccaaccggcgcgcctcccccacgtactcccccgagcaaaccctaatcgtcgcaccgcctctccggcgcctccatCccctcctcctcgccgtactgccttcacatcgtcgccgtcgctcctcctCcccctactgcattcctcttgcggccgtcaccaacgcactctccaccaaatccctattgctcaaaggacgaacaaaaagaattagagcggacaaaaagaattagagagatggggattggaatcaagagacagatcagtaaggaccgacaagccagattcgtcgacagatcacaaccgttttttgggtttgatgtcttccatttgatttttggcgctcctccctccttgctccgatctggcctaagtgttgccgcccgattttcgcggtcgatcccggcaccagccccttcctccggccgtgtgtgagtccgacattccaagtccccgcggtcggatttctcaaccccggcatcggcctcgcactgcaacaaggtaagttattattgggatgtttatatctgaaaattcagagaatttcttttgaacttcattaattgcttggtcagcaacatagcccaggaaaccaattaaattgatacacatgttgtgtgctctctttagagatcaccatccaaattgacatccaaattaaaaagaagaatttaattatctaaatcatgatgccaatattgagagcttcttttactttccgttgtatacattattctgtgatgtgtaccgaaggttatatacctcaattctggaattgtgctctattgaaccacttgtattcatactgtagtttaccttgtgtcgtttaagtttgtctttgcatatattaatgaatggcat
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| CDS seq | atgcctgatgatggaggtgactgcccacctgatgtggtgttgtacaacaccgtcatcaatggcttcttcaaagagggggatccggacaaagcttacgctacataccatgaaatgtttgaccaggggattttgccagatgttgtgacttacagctctattatcgctgccttatgcaaggctcaagctatggacaaggccatggaggtacttaacaccatggttaagaatggtgtcatgcctaattgcaggacatataatagtattgtgcacggatattgctcttcagggcagttgacagaggctattggatttctcaaaatgatgtgcagtgatggtgtcgaaccagatgttgttacttgtaacttgctgatggattatctttgcaagaacagaagatgcacggaagctagaaagattttcaattctatgaccaagtgtggcctaaagcctgatattactacctattgtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatgatctcctggatttgatggtatggaacggtatccaacctaatcatcatgtattcaacattctaatatgtgcgtacgctaaacaagaaaaagtagatgaggcgatgcttgtattcagcaaaatgaggcagcaaggattgagtccgaatgcagtgaactacagaacagtcatagatgtactctgcaagctaggcagagtatacgatgcagtgcttaccttaaagcagatgatcaatgaaggactaacccCtgacatcattgtatatacccccctaattcatggtttttgtacctgtgacaaatgggagaaggctgaggagttaattttttaa
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| Protein seq | MPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELIF |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_10g0015800 | OsPr106_10g0015800.01 | Chr10 | 20840390 | 20844276 | - | NAM | ||
| CDS seq | atgcctgatgatggaggtgactgcccacctgatgtggtgttgtacaacaccgtcatcaatggcttcttcaaagagggggatccggacaaagcttacgctacataccatgaaatgtttgaccaggggattttgccagatgttgtgacttacagctctattatcgctgccttatgcaaggctcaagctatggacaaggccatggaggtacttaacaccatggttaagaatggtgtcatgcctaattgcaggacatataatagtattgtgcacggatattgctcttcagggcagttgacagaggctattggatttctcaaaatgatgtgcagtgatggtgtcgaaccagatgttgttacttgtaacttgctgatggattatctttgcaagaacagaagatgcacggaagctagaaagattttcaattctatgaccaagtgtggcctaaagcctgatattactacctattgtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatgatctcctggatttgatggtatggaacggtatccaacctaatcatcatgtattcaacattctaatatgtgcgtacgctaaacaagaaaaagtagatgaggcgatgcttgtattcagcaaaatgaggcagcaaggattgagtccgaatgcagtgaactacagaacagtcatagatgtactctgcaagctaggcagagtatacgatgcagtgcttaccttaaagcagatgatcaatgaaggactaacccCtgacatcattgtatatacccccctaattcatggtttttgtacctgtgacaaatgggagaaggctgaggagttaattttttaa
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| Protein seq | MPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELIF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.667132 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495100 | RBH | 0.603836 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35230 | RBH | 0.199640 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016060 | SBH | 0.176219 | 1.502282 | 1.657409 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016610 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015510 | RBH | 0.0 | 0.0 | 0.387860 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015870 | SBH | 0.063017 | 0.018916 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015860 | RBH | 0.0 | 0.000000 | 3.064457 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0311300 | RBH | 0.0425095 | 0.435917 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015760 | RBH | 0.021628 | 0.078961 | 0.179348 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0340400 | RBH | 0.3763165 | 0.3549495 | 2.6954105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015960 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015570 | RBH | 0.058789 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016090 | RBH | 1.382853 | 1.473791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015610 | SBH | 0.118714 | 0.0 | 0.047110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016100 | SBH | 0.161260 | 0.0 | 0.258236 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015820 | SBH | 0.066264 | 0.0 | 1.332065 |
