Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0495100 | OGI:10048420 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:18823677-18825328 | ||||||||
| Gene Symbol | PPR454, PPR10, PPR2 | ||||||||||
| DNA seq | GATCCAACATTTAAAAAATTAACTCCTCAGCCTTCTCCCATTTGTCACAGGTACAAAAACCATGAATTAGGGGGGTATATACAATGATGTCAGGGGTTAGTCCTTCATTGATCATCTGCTTTAAGGTAAGCACTGCATCGTATACTCTGCCTAGCTTGCAGAGTACATCTATGACTGTTCTGTAGTTCACTGCATTCGGACTCAATCCTTGCTGCCTCATTTTGCTGAATACAAGCATCGCCTCATCTACTTTTTCTTGTTTAGCGTATGCACATATTAGAATGTTGAATACATGATGATTAGGTTGGATACCGTTCCATACCATCAAATCCAGGAGATCATGCATCTCAACAAGGGCTCCTTTGGTAGCATACCCCTGAAGCAGGGTACAATAGGTAGTAATATCAGGCTTTAGGCCACACTTGGTCATAGAATTGAAAATCTTTCTAGCTTCCGTGCATCTTCTGTTCTTGCAAAGATAATCCATCAGCAAGTTACAAGTAACAACATCTGGTTCGACACCATCACTGCACATCATTTTGAGAAATCCAATAGCCTCTGTCAACTGCCCTGAAGAGCAATATCCGTGCACAATACTATTATATGTCCTGCAATTAGGCATGACACCATTCTTAACCATGGTGTTAAGTACCTCCATGGCCTTGTCCATAGCTTGAGCCTTGCATAAGGCAGCGATAATAGAGCTGTAAGTCACAACATCTGGCAAAATCCCCTGGTCAAACATTTCATGGTATGTAGCGTAAGCTTTGTCCGGATCCCCCTCTTTGAAGAAGCCATTGATGACGGTGTTGTACAACACCACATCAGGTGGGCAGTCACCTCCATCATCAGGCATCATTTGGAGCAGCTCGAGAGCTTCTTGGCTTCTGTTCTCATCACACAGACCCTTGAGAAGAATGGTGCAGGAGAAGACATTTGGTATGCAGCCGAGCTGGGTCATTCTGCAGAGCACTATGTCCATTGCGTCGCTCGTCCTCTTGTCGGCACAGAGGCCCTTGAGCAGAGGAGTGAAGGTGATGGCTTCCACTCTAAATCCCTTCTTAATGACATTGCCCAAGGCCGCGAAACCGAGGTCCAAGCGGCCCGCCCGGCAGCAGCAACCGATGAGAACGCTGTAGGTGTACAAGTTGGGAGTTACCTCGTCGGCGCCGGCTCGGGCCATGCGGTTGTAGCGGGACACGGCGGCCGCGGGGCTGTGACGCGCGACGTCGTCGAGGGCGCGGTTCAAGCCGTAGATCGTGGCGCCCTTGCCACGCCGAAGCAATTCGTCGAACACGTGGCGTGCGTCCTCGGCGCCATTGCCCCCCGCGCGGCCCCCTCGCCCTTGGATCGAGCCCTCCGAGCCAACAGCGCGGGAAGCGGCGCGGCGCGCCATGCCCGCCCTAGCTGACAGGTGCAGCAGCAGCAGCAGCAGCAGCGGCGGCTGCGAGGCCTGACTCCCACACACAGGCACACGTGCCCAGTGCGAAGCTCGCCGATCCGCGCCGTCCTCTGATCTGCGCCGCCCAGATCGAGGCCGCCGCGGGCGCCTGGGGAATCTCAACCCAACCCCAGCCCCAGCAGGAATCTCAACGTGACACCTCCCCCGGTGACGCGGCGAAGCAAATCCTCTTCCTCCTCACTAGGAGTAT
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| CDS seq | ATGGCGCGCCGCGCCGCTTCCCGCGCTGTTGGCTCGGAGGGCTCGATCCAAGGGCGAGGGGGCCGCGCGGGGGGCAATGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTTCGGCGTGGCAAGGGCGCCACGATCTACGGCTTGAACCGCGCCCTCGACGACGTCGCGCGTCACAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGACGAGGTAACTCCCAACTTGTACACCTACAGCGTTCTCATCGGTTGCTGCTGCCGGGCGGGCCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCATTAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACTCCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCTGCAGAATGACCCAGCTCGGCTGCATACCAAATGTCTTCTCCTGCACCATTCTTCTCAAGGGTCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGCTGCTCCAAATGATGCCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTTGTACAACACCGTCATCAATGGCTTCTTCAAAGAGGGGGATCCGGACAAAGCTTACGCTACATACCATGAAATGTTTGACCAGGGGATTTTGCCAGATGTTGTGACTTACAGCTCTATTATCGCTGCCTTATGCAAGGCTCAAGCTATGGACAAGGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTAATTGCAGGACATATAATAGTATTGTGCACGGATATTGCTCTTCAGGGCAGTTGACAGAGGCTATTGGATTTCTCAAAATGATGTGCAGTGATGGTGTCGAACCAGATGTTGTTACTTGTAACTTGCTGATGGATTATCTTTGCAAGAACAGAAGATGCACGGAAGCTAGAAAGATTTTCAATTCTATGACCAAGTGTGGCCTAAAGCCTGATATTACTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGATCTCCTGGATTTGATGGTATGGAACGGTATCCAACCTAATCATCATGTATTCAACATTCTAATATGTGCATACGCTAAACAAGAAAAAGTAGATGAGGCGATGCTTGTATTCAGCAAAATGAGGCAGCAAGGATTGAGTCCGAATGCAGTGAACTACAGAACAGTCATAGATGTACTCTGCAAGCTAGGCAGAGTATACGATGCAGTGCTTACCTTAAAGCAGATGATCAATGAAGGACTAACCCCTGACATCATTGTATATACCCCCCTAATTCATGGTTTTTGTACCTGTGACAAATGGGAGAAGGCTGAGGAGTTAATTTTTTAA
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| Protein seq | MARRAASRAVGSEGSIQGRGGRAGGNGAEDARHVFDELLRRGKGATIYGLNRALDDVARHSPAAAVSRYNRMARAGADEVTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELIF |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0495100 | OsNip_10t0495100-01 | Chr10 | 18823677 | 18825328 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGCGCCGCGCCGCTTCCCGCGCTGTTGGCTCGGAGGGCTCGATCCAAGGGCGAGGGGGCCGCGCGGGGGGCAATGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTTCGGCGTGGCAAGGGCGCCACGATCTACGGCTTGAACCGCGCCCTCGACGACGTCGCGCGTCACAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGACGAGGTAACTCCCAACTTGTACACCTACAGCGTTCTCATCGGTTGCTGCTGCCGGGCGGGCCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCATTAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACTCCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCTGCAGAATGACCCAGCTCGGCTGCATACCAAATGTCTTCTCCTGCACCATTCTTCTCAAGGGTCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGCTGCTCCAAATGATGCCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTTGTACAACACCGTCATCAATGGCTTCTTCAAAGAGGGGGATCCGGACAAAGCTTACGCTACATACCATGAAATGTTTGACCAGGGGATTTTGCCAGATGTTGTGACTTACAGCTCTATTATCGCTGCCTTATGCAAGGCTCAAGCTATGGACAAGGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTAATTGCAGGACATATAATAGTATTGTGCACGGATATTGCTCTTCAGGGCAGTTGACAGAGGCTATTGGATTTCTCAAAATGATGTGCAGTGATGGTGTCGAACCAGATGTTGTTACTTGTAACTTGCTGATGGATTATCTTTGCAAGAACAGAAGATGCACGGAAGCTAGAAAGATTTTCAATTCTATGACCAAGTGTGGCCTAAAGCCTGATATTACTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGATCTCCTGGATTTGATGGTATGGAACGGTATCCAACCTAATCATCATGTATTCAACATTCTAATATGTGCATACGCTAAACAAGAAAAAGTAGATGAGGCGATGCTTGTATTCAGCAAAATGAGGCAGCAAGGATTGAGTCCGAATGCAGTGAACTACAGAACAGTCATAGATGTACTCTGCAAGCTAGGCAGAGTATACGATGCAGTGCTTACCTTAAAGCAGATGATCAATGAAGGACTAACCCCTGACATCATTGTATATACCCCCCTAATTCATGGTTTTTGTACCTGTGACAAATGGGAGAAGGCTGAGGAGTTAATTTTTTAA
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| Protein seq | MARRAASRAVGSEGSIQGRGGRAGGNGAEDARHVFDELLRRGKGATIYGLNRALDDVARHSPAAAVSRYNRMARAGADEVTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELIF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0495100 | OsNip_10t0495100-02 | Chr10 | 18823689 | 18825272 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGCGCCGCGCCGCTTCCCGCGCTGTTGGCTCGGAGGGCTCGATCCAAGGGCGAGGGGGCCGCGCGGGGGGCAATGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTTCGGCGTGGCAAGGGCGCCACGATCTACGGCTTGAACCGCGCCCTCGACGACGTCGCGCGTCACAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGACGAGGTAACTCCCAACTTGTACACCTACAGCGTTCTCATCGGTTGCTGCTGCCGGGCGGGCCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCATTAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACTCCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCTGCAGAATGACCCAGCTCGGCTGCATACCAAATGTCTTCTCCTGCACCATTCTTCTCAAGGGTCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGCTGCTCCAAATGATGCCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTTGTACAACACCGTCATCAATGGCTTCTTCAAAGAGGGGGATCCGGACAAAGCTTACGCTACATACCATGAAATGTTTGACCAGGGGATTTTGCCAGATGTTGTGACTTACAGCTCTATTATCGCTGCCTTATGCAAGGCTCAAGCTATGGACAAGGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTAATTGCAGGACATATAATAGTATTGTGCACGGATATTGCTCTTCAGGGCAGTTGACAGAGGCTATTGGATTTCTCAAAATGATGTGCAGTGATGGTGTCGAACCAGATGTTGTTACTTGTAACTTGCTGATGGATTATCTTTGCAAGAACAGAAGATGCACGGAAGCTAGAAAGATTTTCAATTCTATGACCAAGTGTGGCCTAAAGCCTGATATTACTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGATCTCCTGGATTTGATGGTATGGAACGGTATCCAACCTAATCATCATGTATTCAACATTCTAATATGTGCATACGCTAAACAAGAAAAAGTAGATGAGGCGATGCTTGTATTCAGCAAAATGAGGCAGCAAGGATTGAGTCCGAATGCAGTGAACTACAGAACAGTCATAGATGTACTCTGCAAGCTAGGCAGAGTATACGATGCAGTGCTTACCTTAAAGCAGATGATCAATGAAGGACTAACCCCTGACATCATTGTATATACCCCCCTAATTCATGGTTTTTGTACCTGTGACAAATGGGAGAAGGCTGAGGAGTTAATTTTTT
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| Protein seq | MARRAASRAVGSEGSIQGRGGRAGGNGAEDARHVFDELLRRGKGATIYGLNRALDDVARHSPAAAVSRYNRMARAGADEVTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELIF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.603836 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495200 | SBH | 0.658743 | 0.419048 | 0.616906 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35230 | RBH | 0.199640 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016060 | SBH | 0.176219 | 1.502282 | 1.657409 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016120 | SBH | 0.160919 | 0.0 | 0.161049 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015510 | SBH | 0.0 | 0.0 | 0.387860 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015970 | SBH | 0.0 | 0.051026 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015800 | RBH | 0.0 | 0.0 | 0.667132 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313900 | RBH | 7.963998 | 15.610822 | 18.6903055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015760 | RBH | 0.021628 | 0.078961 | 0.179348 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0334700 | SBH | 0.781508 | 1.517203 | 5.5260035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015500 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015580 | RBH | 0.058650 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016040 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015840 | SBH | 0.387500 | 0.839234 | 1.622123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015790 | SBH | 0.000000 | 0.000000 | 0.568957 |
