Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0015500 | OGI:10048420 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:21012512-21014679 | ||||||||
| Gene Symbol | PPR454, PPR10, PPR2, Rf4, Rf-4, PPR782a, PPR9, PPR3, RF1, Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6 | ||||||||||
| DNA seq | TCATTGATCATCTGCTTTAAGGTAAGCACTGCATCGTATACTCTGCCTAGCTTGCAGAGTACATCTATGATTGTTCTGTAGTTCACTGCATTCGGACTCAATCCTTGCTGCCTCATTTTGCTGAATACAAGCATTGCCTCATCTACTTTTTCTTGTTTAGCGTATGCACATATTAGAATGTTGAATACATGATGATTAGGTTGGATACCGTTCCATACCATCAAATCCAAGAGATCATGCATCTCAACAAGGGCTCCTTTGGTAGCATACCCCTGAAGCAGGGTACAATAGGTAGTAATATCAGGCTTTAGGCCCCACTTGGTCATAGAATCGAAAATCTTTCTAGCTTCCGTGCATCTTCTGTTCTTGCAAAGATAATCCATCAGCAAGTTACAAGTAACAACATCTGGTTCGACACCATCACTGCACATCTTTTTGAGAAATCCAATAGCCTCTGTCAACTGCCCTGAAGAGCAATATCCGTGCACAATACTATTATATGTCCTGCAATTAGGCATGACACCATTCTTAACCATGGTGTTAAGTACCTCCATGGCCTTGTCCATAGCTTGAGCCTTGCATAAGGCAGCGATAATAGAGCTGTAAGTCACAACATCTGGCAAAATCCCCTGGTCAAACATTTCATGGTATGTAGCGTAAGCTTTGTCCGGATCCCCCTCTTTGAAGAAGCCATTGATGACGGTGTTGTACAACACCACATCAGGTGGGCAGTCACCTCCATCATCAGGCATCATTTGGAGCAGCTCGAGAGCTTCTTGGCTTCTGTTCTCATCACACAGACCCTTGAGAAGAATGGTGCAGGAGAAGACATTTGGTATGCAGCCGAGCTGGGTCATTCTGCGGAGCACTATGTCCATTGCGTCGCTCGTCCTCTTGTCGGCACAGAGGCCCTTGAGCAGAGGTGTGAAGGTGATGGCTTCCACTCTAAATCCCTTCTTAATGACATTGTCCAAGCGGCCCGCGCGGCAGCAGCAACCGATGAGAACGCTGTAGGTGTACAAGTTGGGAGTTACCTCGTGGGCGCCGGCTCGGGCCATGCGGTTGTAGCGGGACACGGCGGCCGTGGGGCTGTGACGCGCGACGTCGTCGAGGGCGCGGTTCAAGCCGTAGATCGTGGCGCCCCTGCCACGCCGGAGCAATTCGTCGAACACGTGGCGTGCGTCCTCGGCGCCATTGCCCCCCGCGCGGCCCCCTCGCCCTTGGATCGAGCCCTCCGAGCCAACAGCGCGGGAAGCGGCGCGGCGCGCCATGCCCGCCCTAGCTGACAGGTGCAGCAGCAGCAGCACCGGCGGCTGCGGAGAAAATGGGGATTATACCATCCTCAAAACAGGGCTTTGCTGAAATGCCATCCTACAATTGGGATTCGCCCAAATACCACTTTCAACTGAGCCCAACCCGCTGAAATGCCATCCCAAATCATTTTCATCAAAAATAAAAGATTTTACTCTATTTTTCACATGAGTTGACGAAATTACCCCTCAGTCAATTTCATCGTTAGAAATCAATCGGCTGGGAGAGCGAGACGCATAGGGTTAGGGTTTCGTCCGCCGCGCCGATCTGGGCGCCGCCGCGCGACCTCCCTAGCGCCGCCGCGCTGCCCTGCCCTTCCCTCCAGCAACCGCTCCGCCGTGCCCTCCCCTCGCGACGACGCGGCGCGCCTCCCCTCGCGCCGCCACGCCGCGTTGCGGCCGTCCCGTGGCAGCGACCTCTCCCTTGCGCCGCCGCGCCGCCGGGAGCTTCGCCGGCTGGGATGGTGCCGGCAGGTCAGAGCTCCCACACAGCTGTGACCGGCATCCCGGCCGCGAGGCAACACAAGCAGATGCGGGGAGCGCGAGCTGCAATGGCGCAGGCCATGGTTCCGAGGAGCTCTCATACAGCAGTACTGTCCACCGTGAGGCCCCACGCGCCATTGTCGAACACTAGGGGAGCTCCGCCAATGGCAATGTCGCCGGGCGTTCCGACGATCCCAACTCCGACCGGGAATCCTCACGCGTCGCAGCAACAGAGAGCAGCAATGGCGAGGCACCCAGCTCCGACGAGCGCTCGTGCAATCGGAGCCCCCATCCAGCCCACGGAGCCTCATGCGCCACTGCCGAACACCGGGGGAGAAGGAGCACCACCACCAGCACGCACCGTGCCACCGCCAT
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| CDS seq | ATGCCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTTGTACAACACCGTCATCAATGGCTTCTTCAAAGAGGGGGATCCGGACAAAGCTTACGCTACATACCATGAAATGTTTGACCAGGGGATTTTGCCAGATGTTGTGACTTACAGCTCTATTATCGCTGCCTTATGCAAGGCTCAAGCTATGGACAAGGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTAATTGCAGGACATATAATAGTATTGTGCACGGATATTGCTCTTCAGGGCAGTTGACAGAGGCTATTGGATTTCTCAAAAAGATGTGCAGTGATGGTGTCGAACCAGATGTTGTTACTTGTAACTTGCTGATGGATTATCTTTGCAAGAACAGAAGATGCACGGAAGCTAGAAAGATTTTCGATTCTATGACCAAGTGGGGCCTAAAGCCTGATATTACTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGATCTCTTGGATTTGATGCAAAATGAGGCAGCAAGGATTGAGTCCGAATGCAGTGAACTACAGAACAATCATAGATGTACTCTGCAAGCTAGGCAGAGTATACGATGCAGTGCTTACCTTAAAGCAGATGATCAATGA
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| Protein seq | MPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKKMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFDSMTKWGLKPDITTYCTLLQGYATKGALVEMHDLLDLMQNEAARIESECSELQNNHRCTLQARQSIRCSAYLKADDQ |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0015500 | OsLima_10g0015500.01 | Chr10 | 21012512 | 21014679 | - | NAM | ||
| CDS seq | ATGCCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTTGTACAACACCGTCATCAATGGCTTCTTCAAAGAGGGGGATCCGGACAAAGCTTACGCTACATACCATGAAATGTTTGACCAGGGGATTTTGCCAGATGTTGTGACTTACAGCTCTATTATCGCTGCCTTATGCAAGGCTCAAGCTATGGACAAGGCCATGGAGGTACTTAACACCATGGTTAAGAATGGTGTCATGCCTAATTGCAGGACATATAATAGTATTGTGCACGGATATTGCTCTTCAGGGCAGTTGACAGAGGCTATTGGATTTCTCAAAAAGATGTGCAGTGATGGTGTCGAACCAGATGTTGTTACTTGTAACTTGCTGATGGATTATCTTTGCAAGAACAGAAGATGCACGGAAGCTAGAAAGATTTTCGATTCTATGACCAAGTGGGGCCTAAAGCCTGATATTACTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGATCTCTTGGATTTGATGCAAAATGAGGCAGCAAGGATTGAGTCCGAATGCAGTGAACTACAGAACAATCATAGATGTACTCTGCAAGCTAGGCAGAGTATACGATGCAGTGCTTACCTTAAAGCAGATGATCAATGA
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| Protein seq | MPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKKMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFDSMTKWGLKPDITTYCTLLQGYATKGALVEMHDLLDLMQNEAARIESECSELQNNHRCTLQARQSIRCSAYLKADDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495200 | RBH | 0.658743 | 0.419048 | 0.616906 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35230 | RBH | 0.199640 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015870 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016130 | RBH | 0.163027 | 0.000000 | 0.213683 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015690 | RBH | 0.000000 | 0.000000 | 4.637260 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015670 | RBH | 0.061252 | 0.146548 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015810 | SBH | 0.000000 | 2.258897 | 3.603101 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313900 | RBH | 7.963998 | 15.610822 | 18.6903055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015930 | SBH | 0.037830 | 0.006792 | 0.266487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336900 | RBH | 0.168846 | 0.2688145 | 0.650718 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015690 | SBH | 0.127306 | 0.123548 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015400 | SBH | 0.067456 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015820 | RBH | 2.711197 | 5.529148 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015610 | RBH | 0.118714 | 0.0 | 0.047110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016060 | RBH | 0.058218 | 0.850175 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015670 | SBH | 0.283203 | 1.667709 | 1.056783 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016020 | SBH | 0.771048 | 7.247159 | 6.238315 |
