Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0015510 | OGI:10048420 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:19385108-19386701 | ||||||||
| Gene Symbol | PPR454, PPR10, PPR2, Rf4, Rf-4, PPR782a, PPR9, PPR3, PPR11 | ||||||||||
| DNA seq | gatccaacatttaaaaaattaactcctcagccttctcccatttgtcacaggtacaaaaaccatgaattaggggggtatatacaatgatgtcaggggttagtccttcattgatcatctgctttaaggtaagcactgcatcgtatactctgcctagcttgcagagtacatctatgactgttctgtagttcactgcattcggactcaatccttgctgcctcattttgctgaatacaagcatcgcctcatctactttttcttgtttagcgtatgcacatattagaatgttgaatacatgatgattaggttggataccgttccataccatcaaatccaggagatcatgcatctcaacaagggctcctttggtagcatacccctgaagcagggtacaataggtagtaatatcaggctttaggccacacttggtcatagaattgaaaatctttctagcttccgtgcatcttctgttcttgcaaagataatccatcagcaagttacaagtaacaacatctggttcgacaccatcactgcacatcattttgagaaatccaatagcctctgtcaactgccctgaagagcaatatccgtgcacaatactattatatgtcctgcaattaggcatgacaccattcttaaccatggtgttaagtacctccatggccttgtccatagcttgagccttgcataaggcagcgataatagagctgtaagtcacaacatctggcaaaatcccctggtcaaacatttcatggtatgtagcgtaagctttgtccggatccccctctttgaagaagccattgatgacggtgttgtacaacaccacatcaggtgggcagtcacctccatcatcaggcatcatttggagcagctcgagagcttcttggcttctgttctcatcacacagacccttgagaagaatggtgcaggagaagacatttggtatgcagccgagctgggtcattctgcagagcactatgtccattgcgtcgctcgtcctcttgtcggcacagaggcccttgagcagaggagtgaaggtgatggcttccactctaaatcccttcttaatgacattgcccaaggccgcgaaaccgaggtccaagcggcccgcccggcagcagcaaccgatgagaacgctgtaggtgtacaagttgggagttacctcgtcggcgccggctcgggccatgcggttgtagcgggacacggcggccgcggggctgtgacgcgcgacgtcgtcgagggcgcggttcaagccgtagatcgtggcgcccttgccacgccgaagcaattcgtcgaacacgtggcgtgcgtcctcggcgccattgccccccgcgcggccccctcgcccttggatcgagccctccgagccaacagcgcgggaagcggcgcggcgcgccatgcccgccctagctgacaggtgcagcagcagcagcagcagcagcggcggctgcgaggcctgactcccacacacaggcacacgtgcccagtgcgaagctcgccgatccgcgccgtcctctgatctgcgccgcccagatcgaggccgccgcgggcgcctggggaatctcaacccaaccccagccccagcaggaatctcaac
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| CDS seq | atgcctgatgatggaggtgactgcccacctgatgtggtgttgtacaacaccgtcatcaatggcttcttcaaagagggggatccggacaaagcttacgctacataccatgaaatgtttgaccaggggattttgccagatgttgtgacttacagctctattatcgctgccttatgcaaggctcaagctatggacaaggccatggaggtacttaacaccatggttaagaatggtgtcatgcctaattgcaggacatataatagtattgtgcacggatattgctcttcagggcagttgacagaggctattggatttctcaaaatgatgtgcagtgatggtgtcgaaccagatgttgttacttgtaacttgctgatggattatctttgcaagaacagaagatgcacggaagctagaaagattttcaattctatgaccaagtgtggcctaaagcctgatattactacctattgtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatgatctcctggatttgatggtatggaacggtatccaacctaatcatcatgtattcaacattctaatatgtgcatacgctaaacaagaaaaagtagatgaggcgatgcttgtattcagcaaaatgaggcagcaaggattgagtccgaatgcagtgaactacagaacagtcatagatgtactctgcaagctaggcagagtatacgatgcagtgcttaccttaaagcagatgatcaatgaaggactaacccctgacatcattgtatatacccccctaattcatggtttttgtacctgtgacaaatgggagaaggctgaggagttaattttttaa
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| Protein seq | MPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELIF |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0015510 | OsCMeo_10g0015510.01 | Chr10 | 19385108 | 19386701 | - | NAM | ||
| CDS seq | atgcctgatgatggaggtgactgcccacctgatgtggtgttgtacaacaccgtcatcaatggcttcttcaaagagggggatccggacaaagcttacgctacataccatgaaatgtttgaccaggggattttgccagatgttgtgacttacagctctattatcgctgccttatgcaaggctcaagctatggacaaggccatggaggtacttaacaccatggttaagaatggtgtcatgcctaattgcaggacatataatagtattgtgcacggatattgctcttcagggcagttgacagaggctattggatttctcaaaatgatgtgcagtgatggtgtcgaaccagatgttgttacttgtaacttgctgatggattatctttgcaagaacagaagatgcacggaagctagaaagattttcaattctatgaccaagtgtggcctaaagcctgatattactacctattgtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatgatctcctggatttgatggtatggaacggtatccaacctaatcatcatgtattcaacattctaatatgtgcatacgctaaacaagaaaaagtagatgaggcgatgcttgtattcagcaaaatgaggcagcaaggattgagtccgaatgcagtgaactacagaacagtcatagatgtactctgcaagctaggcagagtatacgatgcagtgcttaccttaaagcagatgatcaatgaaggactaacccctgacatcattgtatatacccccctaattcatggtttttgtacctgtgacaaatgggagaaggctgaggagttaattttttaa
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| Protein seq | MPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELIF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.387860 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0501700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35230 | RBH | 0.199640 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015890 | SBH | 0.092648 | 0.0 | 0.752496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016300 | SBH | 0.047217 | 0.0 | 0.786980 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015520 | SBH | 0.610800 | 1.212539 | 1.200322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015930 | RBH | 0.068308 | 0.008847 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015800 | RBH | 0.0 | 0.0 | 0.667132 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0314300 | RBH | 0.225445 | 0.7313595 | 0.792963 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0016190 | RBH | 0.070883 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0340400 | RBH | 0.3763165 | 0.3549495 | 2.6954105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015960 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015570 | RBH | 0.058789 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016090 | RBH | 1.382853 | 1.473791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015820 | RBH | 0.197398 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016100 | SBH | 0.161260 | 0.0 | 0.258236 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016020 | RBH | 0.771048 | 7.247159 | 6.238315 |
