Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0495400 | OGI:10048420 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:18845293-18847382 | ||||||||
| Gene Symbol | Rf4, Rf-4, PPR782a, PPR9, PPR3, PPR794, PPR6, PPR6-794, PPR5, Rf5, Rf1a, RF1, Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6 | ||||||||||
| DNA seq | GGGATGAATTTACTCTCGTTAAATTTGACAGTAATTAAACTGAGCACACAATCAAGAGCACATATCAGCTATGAGCCTCTCTGTTAACAACATATACTATTCAGTTTCTCCGATGCGGCACCAAATATTAGCTCAACAATCTGTTACCCTAATACTACTAATCTTCAGGCGCAAAGCCATGTTGCCCCCCAACGCGAAATCAGAGGGAAGCAAACGCGTAATTTCTTCAGAAATTACACCGATTCACTCCTATTACAGGACACTGAACTGCATGCCTTGTATTACAGGACACTCCTCTGGTAGCAAACGTCCAGCCTTGCAAGCACACCACCATCCTCCCATTAATTTCTGATATCAATCTGCCAAAAAACATGCTTGTGATCGAAACTAATGCATCATCAAATTAGTAGTAGTAGGATGTGACTTCGAATATCCAATTGATATCATAAAAGATAAACAATTTATCTACCCGAGATATGGACATCTTGATTAAATGCAAAGTGCAAAGGACTGTCAAACATAACTGGCATTCAAAAATTTGAAAGCAAAATGCCCAGCGTTTTAGTTACTTCCATATTGTAGGTTACTGTTTCAGCTTTCAAGCCATTGACCCAGCAATGTCATGCCTGTAGCCTGCCTATAAAACCAAAATAAACTTTTCTGCATGCATTATTGGCATGATCTAAACAAAATTTCAGACTTTCCGTAGCAATTTTGGATGCAATCAGCCAAAGGATATTTGAAGTCTATACATATTAAAAGTAAGCAGCTTATCCAAACCTGCTTAATTAATTTCAAATTTACAGACAAGTGTCTGCAGAACAAACATAAAAACTAAAAAGGACATTTTGAGCGTTGCCTTCTTCTCTAACAACTAATGGTTAGCTTGGAAGAAAGCTAGTATTGCTAATATTCTTCAAGCTAGTATGGAGTTTTATGAATTCAAAAACTGAAAATGGACAGTTTTGCATCGGCAAAAGTAAATTTAATAGCATGCACCTCCTGACTGACAGCTAACCAAATTTGAAAACAGGCACTAAAAACCATTGGCCAAGATTATATAGCAATGCATGGGAATCAATTTACACCTAGAAACATGCTAACATTTACACCAAAAACCGGTGGAAAACCTCTTGGAAAAGAGAATAAAAAACAGGCACAAACCTGATGGATAAGATCTTTGATCTCTCTCCATTGGGCCAAATGCTTAGCCCAACTCATCAACCGCGGAAAAGATGCATGCTTCCTGAAAGGCACGCGTCTTCACTGTTTTCTTATCTACCTGCCAGAAAAAAGTACCTATTAAAAGGTTTTTCAAAGTAGTGCTCCGAAAGGAAGTGTTGTATTACGAGAAAATATACCTGTTTAACACTGAACAGATTCACAGCTTTGCCTACAGCATCTGGTTTCCCTCCAAGTTCTTCCATTTCCAGCATATCAAGCAGCAGGGAAGACACCAGAAAAATGAAAAATAATTAATTAAATAGTTTTGTGTTACATCAAAGTCATCATCGTCAAATCCCAAGAGCTCTTTATCTCACTTCTCCAAATACTTGTAGAACTCAGGATCCTACAAAAGAAATAGCTTTGCAGCCATCATAAGCAGCTGACAGTAATATAGCCGCACAGGTATGACAGAACTAGGGAGGGAAATGATTAGCTCAAGAAGAACTAATTTCCTGGTTGTCGCTGTGTTAACAATGATGCATACAGATAAGAATTTCAGCAATAAATTGAACAATGATAATTATCATCTAAATTTGTAAAAAGCCATCTAATGGTTATAGCCATCACTAACAGGAAACAGAAAGTATAAATTATTTTTAGAATAAGACTGAGGAAACAGAAAGTATAATGTTAGGGGTTAGTCCTTCATCGATCATCTGCTCAAAATAAAGCATAGCATCATCTACACTGCCTGACTTGCAAAGTACATCTATAACTGTTCCATAGCACACTACATTCGGATTCAATCCATGCTGCCTCATTTTGCTGAATACAAGCATTGCCTGATCTACTTTCTCTTGTTTAGCGTATGCACATATTAGAATGTTGAATACATGATGATCCGGTTGGATACCATTTCGTAC
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| CDS seq | GTACGAAATGGTATCCAACCGGATCATCATGTATTCAACATTCTAATATGTGCATACGCTAAACAAGAGAAAGTAGATCAGGCAATGCTTGTATTCAGCAAAATGAGGCAGCATGGATTGAATCCGAATGTAGTGTGCTATGGAACAGTTATAGATGTACTTTGCAAGTCAGGCAGTGTAGATGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAACCCCTAACATTATACTTTCTGTTTCCTCAGTCTTATTCTAA |
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| Protein seq | VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIILSVSSVLF |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0495400 | OsNip_10t0495400-01 | Chr10 | 18845293 | 18847382 | - | RAP2018-11-26 | ||
| CDS seq | GTACGAAATGGTATCCAACCGGATCATCATGTATTCAACATTCTAATATGTGCATACGCTAAACAAGAGAAAGTAGATCAGGCAATGCTTGTATTCAGCAAAATGAGGCAGCATGGATTGAATCCGAATGTAGTGTGCTATGGAACAGTTATAGATGTACTTTGCAAGTCAGGCAGTGTAGATGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAACCCCTAACATTATACTTTCTGTTTCCTCAGTCTTATTCTAA
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| Protein seq | VRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIILSVSSVLF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.828533 | 0.622825 | 0.833279 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495200 | SBH | 0.658743 | 0.419048 | 0.616906 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35436 | SBH | 0.338377 | 0.442807 | 0.161691 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0501700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011070 | RBH | 3.756850 | 3.686613 | 4.692159 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016300 | RBH | 0.047217 | 0.0 | 0.786980 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015990 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016530 | RBH | 0.0 | 0.043213 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015860 | RBH | 0.0 | 0.000000 | 3.064457 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0312500 | RBH | 1.4509705 | 1.9705075 | 1.5231955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015760 | SBH | 0.021628 | 0.078961 | 0.179348 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0334800 | RBH | 5.8412195 | 12.767868 | 7.453612 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015960 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015400 | RBH | 0.067456 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015900 | RBH | 1.654729 | 1.075220 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015610 | SBH | 0.118714 | 0.0 | 0.047110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016060 | RBH | 0.058218 | 0.850175 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015670 | RBH | 0.283203 | 1.667709 | 1.056783 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015820 | RBH | 0.066264 | 0.0 | 1.332065 |
