Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0016160 | OGI:10048420 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:20994006-20997769 | ||||||||
| Gene Symbol | RF1B, RF1b, Rf-1B, PPR7, PPR11 | ||||||||||
| DNA seq | gtcgtcttcttcccgcgcctttcgcgaagccaactgctcgaacggacgcacccgtgcagccgcgctcgtcggccgtcgccgtcgaggccgcccctccgccgccgccagcagctgatccgttcgccattCcttcgcgcgctggttagttccaccttcctttgcctctggttcctagtttcctagtaaaccacggggtgatttattcagcgctgccgcaggtttccacctttccttgcccgtccgtcaggccggacatggcacgccgcgtcgctgcccgcgcccgcgcccgcgccggcggcgtcccgcgctcggagggtacgatccaagaccgagcacgcgttgggagcggtggcgccgaggacgcactcgacgtgttcgacgaattgctccggcgaggcatcggcgccccgatccgcagcttgaacggcgctctcgccgacgtcgcgcgcgacaaccccgcggccgctgtgtcccgcttcaaccgcatggcacgagctggtgccagcatggtAactcccaccgtgcacacctatggcatcctcatcggctgctgctgcagtgcgggccgcttagacctcggtttcgcggccttgggccatgtcgttaagaagggattcagagtggaacccatcatctttaatcctctgctcaagggcctctgtgcagacaAGaggacggacgacgcaatggacatagtgctccgcggaatgaccgagctcggctgcgtgccAaatgtcttctcccacACcattattctcaagggactctgtcatgagaacagaagccaagaagctctcgagctgctccacatgatggctgatgatggaggaggctgcttacctaatgttgtgtcatacagcaccgtcatcgatggcctcttgaaaggaGgggatccggacaaagcctacgctacataccgtgaaatgcttgaccggaggattttgccaaatgttgtgatttacagctccattattgctgccctatgcaagggtcaagcAatggacaaggccatggaggtacacgataggatggttaagaatggagttacacccaattgcttcacgtAtactagtcttgtgcatggaTtttgctcttcagggcagttgacagaggctattaaatttctagAAaagaTgtgcagcaatggtgttgaaccaaatgttgttacttatagctcgTttatggactatctctgcaagaacggaagatgcacagaagctagaaagatttttgattctatggtcaagaggggcctaaagcctgatattactacctacagtagcttacttcatgggtatgctatcgaaggagctcttgttgagatgcatggtctctttgatttgatggtacAaagtgatatgcaacccgatcattatgtcttcaacacactaatatatgcatccgccaagcaaggaaaagtagatgaggccatgcttgtatttagcAaaatgaggcagcaaggattgaaacctaaTtgtgttacgtataacactttgattaatggctactgtaaaattactaggatggagaatgctttagcacttttccaagagatggtgagcaatggtgttagtcctaattttatcacatataacataatgctgcAaggtttatttcgtacaggaagaactgctactgcaaaagaattctatgtacagattatcaaaagtggcaaaaaaGatcttatagaacaggggttgctagaagaattggatgatctatttctttcaatggaGgacaatgactgtagtactgtgtcgactcctgcatgctaaattgcagagttacAaagttacttcAaaaaggggaagtaggcactaggcagtgctGgggtttacatgtccaaaattgatcaaaataacctccccgttgaagcttcgactgttgatttgctgattttgctgatttcaagcaggaaattcaatcaaacatacggaatttctccctgAaaaAGTTTTGCTCTGAAGTGAAATCCATCCTGTTTGAAATGGCCTACAGTTATGCAGTTGTAACTGGCTATTGTTGGCCTTCTCACTGAATTAGTAATACAAACAAGAAATTCTGGACCACTCTATGTTTGGGGATCACCTTTATCTGTTACATGTGGATTGCTAGGTACAAACTGCCCTTTTTTTTGTCACACTATATCTGATTCCCTTCGAAGAAAAATTCCCAGATGATATTATAGTTCTCTAATTTTGCTACTTTTTGTAGCTTTGTTAGAACTAATTTATTATCTGCTAAACTTGCAGTGACAAAGATTCCCCTGTATGATAAATAGCATAGTTAGCAGACTGTTTCACAGAGGTGCACTAAGCAGAGCTGGTGCTTACCTCTCCATGACTGATGATAAGCACTTCTCTCTCAAAGCATGGTCTGTTTCCCTGTTTTATAGATCTTTTTTTCTGGAGGCAAACACCAAGAATATCATAGGTTTTCCCCTGAAAAGTACAAGTATTTATAGAATATTGGAACCGCTGAAGATTTTTGCAGCTACGAAATTCTGAATTGGAATTCTTGTCTGCTACAATCCTGCTAGTGGAGGGTTCTTTTCTCTGTATGCATAAATAGCAAGGTTTCAATCAAGAGGGTTTCATGAGTTCAATTATGAATATTGTTGGGTCTATACTAGTTTGCCTTTCTCCGCACTGAAGAAATGATAGAAGTATTGTTATTCAACAAATGCAGTATTTAATTATCCAAAAAAAAAAACATTGTGGAACAAGATCTTGTTATATAAAATGATATTCTACTGGATCATCATATCTCCAACATATTAATACTATGTGCATATGGTAAACTTGAAATGTTTGATGAAGAAATGCTTTTTGTACTAAACTGACTATTTTTGACGTAAAAAGGTAGAGGTGGCTCTACCTTGTAGCCATCTCATTAATGGAAATTGTGGAAGACAAGGTTGCATTGTGAACATTAGGTTGGAGGGGAAAAAACAAAAAAAAAAAGGGAAAAAATAAAAAACATTACACTGTAAGGTGAACTGTCTAAGCTGCTCGCACCAATTTTTAATCCCCAATTTGGTCTCACAACTGGCTCGGTGGCTACAAAGATGAAGAGTACCAGATATTTGCTGCTTTAGGAATTAACTGGATATCGTCATGTACAGAGTTATTCTAGAAGAACTTTGTAAAAAAAAGAATAATACTACTAGATACTAGTGTTCATGAAGTGCTCCAGATGTTTGACAATTGGCAACCTCAACCTGTGCTCAACTGGTTTTGAGAgattgattctgggactgcagtatcatgatagctaccttgcttaaacatggcagaaagcatgacagcatgatttgctagcttctataatctgggccaatggtttttagcacctggtgctttgagcgacagataataactgtaaatcctatagaacaagggttgttgcaaaggttctgaacttctgatgaaattatcaatggttgtgcaagctccttcggccatgttttgttgggtctggaaagaaaaaagattcttatcgtcatacatatttttctcTtttttttgggtaaggaaaaagtattgtgttgaAGaatttctaaagctttccctcagcattaggagattgaaaggaatacTttttttttgtgaggaaagggatacttatttggtactattgttctagcatggaaccatcccctgaaatttgtttgttaaaatgctaatcctacttctatttttccttggacttttcatgaatttgcagggaacatcttcttggcctgctgcaccgagggagaatga
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| CDS seq | atggcacgccgcgtcgctgcccgcgcccgcgcccgcgccggcggcgtcccgcgctcggagggtacgatccaagaccgagcacgcgttgggagcggtggcgccgaggacgcactcgacgtgttcgacgaattgctccggcgaggcatcggcgccccgatccgcagcttgaacggcgctctcgccgacgtcgcgcgcgacaaccccgcggccgctgtgtcccgcttcaaccgcatggcacgagctggtgccagcatggtAactcccaccgtgcacacctatggcatcctcatcggctgctgctgcagtgcgggccgcttagacctcggtttcgcggccttgggccatgtcgttaagaagggattcagagtggaacccatcatctttaatcctctgctcaagggcctctgtgcagacaAGaggacggacgacgcaatggacatagtgctccgcggaatgaccgagctcggctgcgtgccAaatgtcttctcccacACcattattctcaagggactctgtcatgagaacagaagccaagaagctctcgagctgctccacatgatggctgatgatggaggaggctgcttacctaatgttgtgtcatacagcaccgtcatcgatggcctcttgaaaggaGgggatccggacaaagcctacgctacataccgtgaaatgcttgaccggaggattttgccaaatgttgtgatttacagctccattattgctgccctatgcaagggtcaagcAatggacaaggccatggaggtacacgataggatggttaagaatggagttacacccaattgcttcacgtAtactagtcttgtgcatggaTtttgctcttcagggcagttgacagaggctattaaatttctagAAaagaTgtgcagcaatggtgttgaaccaaatgttgttacttatagctcgTttatggactatctctgcaagaacggaagatgcacagaagctagaaagatttttgattctatggtcaagaggggcctaaagcctgatattactacctacagtagcttacttcatgggtatgctatcgaaggagctcttgttgagatgcatggtctctttgatttgatggtacAaagtgatatgcaacccgatcattatgtcttcaacacactaatatatgcatccgccaagcaaggaaaagtagatgaggccatgcttgtatttagcAaaatgaggcagcaaggattgaaacctaaTtgtgttacgtataacactttgattaatggctactgtaaaattactaggatggagaatgctttagcacttttccaagagatggtgagcaatggtgttagtcctaattttatcacatataacataatgctgcAaggtttatttcgtacaggaagaactgctactgcaaaagaattctatgtacagattatcaaaagtggcaaaaaaGatcttatagaacaggggttgctagaagaattggatgatctatttctttcaatggaGgacaatgactgtagtactgtgtcgactcctgcatgctaa
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| Protein seq | MARRVAARARARAGGVPRSEGTIQDRARVGSGGAEDALDVFDELLRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSGKKDLIEQGLLEELDDLFLSMEDNDCSTVSTPAC |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0016160 | OsNaBo_10g0016160.02 | Chr10 | 20995844 | 20997769 | + | NAM | ||
| CDS seq | atgtccaaaattgatcaaaataacctccccgttgaagcttcgactgaaattcaatcaaacatacggaatttctccctgAaaaAGTTTTGCTCTGAAGTGAAATCCATCCTAGGTGCACTAAGCAGAGCTGGTGCTTACCTCTCCATGACTGATGATAAGCACTTCTCTCTCAAAGCATGGTCTGTTTCCCTGTTTTATAGATCTTTTTTTCTGGAGGCAAACACCAAGAATATCATAGggaacatcttcttggcctgctgcaccgagggagaatga
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| Protein seq | MSKIDQNNLPVEASTEIQSNIRNFSLKKFCSEVKSILGALSRAGAYLSMTDDKHFSLKAWSVSLFYRSFFLEANTKNIIGNIFLACCTEGE |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0016160 | OsNaBo_10g0016160.01 | Chr10 | 20994006 | 20996802 | + | NAM | ||
| CDS seq | atggcacgccgcgtcgctgcccgcgcccgcgcccgcgccggcggcgtcccgcgctcggagggtacgatccaagaccgagcacgcgttgggagcggtggcgccgaggacgcactcgacgtgttcgacgaattgctccggcgaggcatcggcgccccgatccgcagcttgaacggcgctctcgccgacgtcgcgcgcgacaaccccgcggccgctgtgtcccgcttcaaccgcatggcacgagctggtgccagcatggtAactcccaccgtgcacacctatggcatcctcatcggctgctgctgcagtgcgggccgcttagacctcggtttcgcggccttgggccatgtcgttaagaagggattcagagtggaacccatcatctttaatcctctgctcaagggcctctgtgcagacaAGaggacggacgacgcaatggacatagtgctccgcggaatgaccgagctcggctgcgtgccAaatgtcttctcccacACcattattctcaagggactctgtcatgagaacagaagccaagaagctctcgagctgctccacatgatggctgatgatggaggaggctgcttacctaatgttgtgtcatacagcaccgtcatcgatggcctcttgaaaggaGgggatccggacaaagcctacgctacataccgtgaaatgcttgaccggaggattttgccaaatgttgtgatttacagctccattattgctgccctatgcaagggtcaagcAatggacaaggccatggaggtacacgataggatggttaagaatggagttacacccaattgcttcacgtAtactagtcttgtgcatggaTtttgctcttcagggcagttgacagaggctattaaatttctagAAaagaTgtgcagcaatggtgttgaaccaaatgttgttacttatagctcgTttatggactatctctgcaagaacggaagatgcacagaagctagaaagatttttgattctatggtcaagaggggcctaaagcctgatattactacctacagtagcttacttcatgggtatgctatcgaaggagctcttgttgagatgcatggtctctttgatttgatggtacAaagtgatatgcaacccgatcattatgtcttcaacacactaatatatgcatccgccaagcaaggaaaagtagatgaggccatgcttgtatttagcAaaatgaggcagcaaggattgaaacctaaTtgtgttacgtataacactttgattaatggctactgtaaaattactaggatggagaatgctttagcacttttccaagagatggtgagcaatggtgttagtcctaattttatcacatataacataatgctgcAaggtttatttcgtacaggaagaactgctactgcaaaagaattctatgtacagattatcaaaagtggcaaaaaaGatcttatagaacaggggttgctagaagaattggatgatctatttctttcaatggaGgacaatgactgtagtactgtgtcgactcctgcatgctaa
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| Protein seq | MARRVAARARARAGGVPRSEGTIQDRARVGSGGAEDALDVFDELLRRGIGAPIRSLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSGKKDLIEQGLLEELDDLFLSMEDNDCSTVSTPAC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.174723 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0499500 | RBH | 0.201772 | 0.204524 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35640 | RBH | 0.170361 | 0.122387 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0499500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015890 | RBH | 0.092648 | 0.0 | 0.752496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016480 | RBH | 0.093903 | 0.0 | 0.116992 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015860 | RBH | 0.154947 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015870 | SBH | 0.063017 | 0.018916 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313900 | RBH | 7.963998 | 15.610822 | 18.6903055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0016080 | SBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336700 | RBH | 14.8875525 | 14.265312 | 27.1701235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015700 | SBH | 0.051787 | 0.129545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015730 | SBH | 0.200955 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016250 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015960 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016380 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015840 | SBH | 0.387500 | 0.839234 | 1.622123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016280 | RBH | 0.0 | 0.0 | 0.059027 |
