Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0024760 | OGI:02001240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:25963277-25964134 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctcctcacaaataataagattgacggaaacattcctcaagaactggggcaactgtcaaacttggggtggttgtccctaagtgaaaacaacctatcaggtggttttccgtatggattcttcaaaaatctatcttctcttcgaaaattgagcattccgacgaccttgctaggtgggacattgctatctgacattggcaatacactccctaatctggtataacttttcttggctgacaacatgtttgaaggtcatatcccagcttctttatgcaatgcatcattgctacgagtgatagatctatcctcaaataattttactggccatattcccaattcttttggacggctttcaggtttgtctactttaaaccttgagacaaacaagcttgaagctagggacaaccaaggttgggaattcttagaagcgctcagaagctgcaagaatttaaatgtgctctcactagctgacaacctgttatttggggacgtaccaaattcaattggtggcctatccatcaacctgacaattttattgttgggcggaaacaacctaacagggatagtttctctaagcattgggaaccttcaaggcttaattacattggggttagattttaacggttttactggtacaattgagtggattggaaatctgagaaaactacaagtcttaaatattcaacagaacaacttcattgggactattccatcctcaattagcgatcttccacagttaacaaagctatacctacgaaacaatagattcgaaggatccattccacccaccttagggaagctttctcaactttcaagcttgaaccttagctataacaatctccaaggtaacataccttag
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| CDS seq | atgctcctcacaaataataagattgacggaaacattcctcaagaactggggcaactgtcaaacttggggtggttgtccctaagtgaaaacaacctatcaggtggttttccgtatggattcttcaaaaatctatcttctcttcgaaaattgagcattccgacgaccttgctaggtttgtctactttaaaccttgagacaaacaagcttgaagctagggacaaccaaggttgggaattcttagaagcgctcagaagctgcaagaatttaaatgtgctctcactagctgacaacctgttatttggggacgtaccaaattcaattggtggcctatccatcaacctgacaattttattgttgggcggaaacaacctaacagggatagtttctctaagcattgggaaccttcaaggcttaattacattggggttagattttaacggttttactggtacaattgagtggattggaaatctgagaaaactacaagtcttaaatattcaacagaacaacttcattgggactattccatcctcaattagcgatcttccacagttaacaaagctatacctacgaaacaatagattcgaaggatccattccacccaccttagggaagctttctcaactttcaagcttgaaccttagctataacaatctccaaggtaacataccttag
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| Protein seq | MLLTNNKIDGNIPQELGQLSNLGWLSLSENNLSGGFPYGFFKNLSSLRKLSIPTTLLGLSTLNLETNKLEARDNQGWEFLEALRSCKNLNVLSLADNLLFGDVPNSIGGLSINLTILLLGGNNLTGIVSLSIGNLQGLITLGLDFNGFTGTIEWIGNLRKLQVLNIQQNNFIGTIPSSISDLPQLTKLYLRNNRFEGSIPPTLGKLSQLSSLNLSYNNLQGNIP |
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| Function | Receptor-like protein 43 [UniProtKB/Swiss-Prot:Q9LJW7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024760 | OsLima_02g0024760.01 | Chr02 | 25963277 | 25964134 | + | NAM | ||
| CDS seq | atgctcctcacaaataataagattgacggaaacattcctcaagaactggggcaactgtcaaacttggggtggttgtccctaagtgaaaacaacctatcaggtggttttccgtatggattcttcaaaaatctatcttctcttcgaaaattgagcattccgacgaccttgctaggtttgtctactttaaaccttgagacaaacaagcttgaagctagggacaaccaaggttgggaattcttagaagcgctcagaagctgcaagaatttaaatgtgctctcactagctgacaacctgttatttggggacgtaccaaattcaattggtggcctatccatcaacctgacaattttattgttgggcggaaacaacctaacagggatagtttctctaagcattgggaaccttcaaggcttaattacattggggttagattttaacggttttactggtacaattgagtggattggaaatctgagaaaactacaagtcttaaatattcaacagaacaacttcattgggactattccatcctcaattagcgatcttccacagttaacaaagctatacctacgaaacaatagattcgaaggatccattccacccaccttagggaagctttctcaactttcaagcttgaaccttagctataacaatctccaaggtaacataccttag
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| Protein seq | MLLTNNKIDGNIPQELGQLSNLGWLSLSENNLSGGFPYGFFKNLSSLRKLSIPTTLLGLSTLNLETNKLEARDNQGWEFLEALRSCKNLNVLSLADNLLFGDVPNSIGGLSINLTILLLGGNNLTGIVSLSIGNLQGLITLGLDFNGFTGTIEWIGNLRKLQVLNIQQNNFIGTIPSSISDLPQLTKLYLRNNRFEGSIPPTLGKLSQLSSLNLSYNNLQGNIP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0615500 | RBH | 1.178434 | 1.962854 | 0.176804 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40200 | RBH | 0.796918 | 1.233021 | 0.045513 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | RBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | SBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025050 | SBH | 0.778974 | 0.000000 | 0.521185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004250 | SBH | 0.061636 | 0.022630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024610 | SBH | 1.116083 | 0.985470 | 3.219374 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0391600 | SBH | 0.170858 | 0.556558 | 0.514145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024620 | RBH | 0.032811 | 0.0 | 0.078690 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0425400 | SBH | 1.672875 | 0.3362355 | 3.077142 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024840 | RBH | 0.416905 | 0.027276 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004210 | SBH | 0.000000 | 0.847441 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004560 | SBH | 8.232897 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025020 | RBH | 0.240422 | 0.0 | 0.434230 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024740 | SBH | 0.0 | 0.0 | 1.133679 |
