Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0024670 | OGI:02069080 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:25701355-25705266 | ||||||||
| Gene Symbol | MAK3, - | ||||||||||
| DNA seq | atccaacgcagagctcatacaccacccggcaaaaccaagcaaagaaggatacggtgctttgcgctccggccgaccggaggtacccatgatctctctccttttattagtgtagtccactttggtcccctaaggaaacttgagtatacgtataccctatgtgtcactcttagtgtaattagacattaccaattcatcatttacatttgtgagtgaagcgcatgaacatttggcccttttaatattgacgaagcttctttgagtgtggttgactgaagctgatttaaaatttttagaatctgattttagtattaatttcaagggtttctttgccactctagttgcctagctgcctaagatttttcttgcaaatcatattttataattcaaaattagcttgaagcttcagccaagcgcacactttgctgtagcctagtgttgaaaatacatacgccttaccctttgcaggtaatgggtgcgcggcgatccgggaaactccgcatgcttatgttatcagcattgttagtactattttgtggagctctcaacgctcgtgcatccacagttaatgagactagtgtggatctacgttcactgctcgatttcaaggcggagatcaaagacgatcccacaggagccttgctcgcttggaatgacagcctccactactgcaagtggacgggagttaattgcagcgcaacgcacccaggtcgtgttacggtgctcaacctcctcggcctaaacttggagggccaaataaccccctcccttggaaacctaactttccttaggaaacttatccttggctcaaatcgcttttccggtcggtttccacctctcaatcgtcttagaagactgcagatccttgccctgggcagcaactcgttccaggggaatattccagacgcactcacaaactgctcccaactagtggtcttagacctctcttctaacaattttgttggtgcgattccccccaacataggtttcctctccaacctacaggctctcgacctatctgcaaacaatctcactggagtaatcccaccatccttgaacaacatcacgcagttacaagaaatatcacttgcaaccaattccctcggaggaagaatcccagaagggcttgggcaattgccaagtatgacgatgatacttctaggccaaaacaatctatcgggtagaattccggcatcactctttaatctatcatatattaacacactagggttggatacaaatatgcttagtggcacattgtcatccaacattggtgatacacttccgcgcctccaattgctcctgttgggtgctaacatgctagaaggcaacatccctgcttcactgggcaatgtctcagagctagcacggatcgatttgtcatccaacagtttcgttggtcaagttcctagttcttttggtaaccttcgtaaactatattatctaaaccttgatcacaacaagattgaagcaggggacaatcaaagctgggaatttttaggtgcaatgagcaattgtcctctacaatttctttcattatatggaaatcaactacacggagatctgccaagctccgttggtaacctatccatcatgctccgacacctagatttaggtgctaaccacttgtcggggatagtaccaccaggtataggaaaatatcctgatttgtctagtctgggactaagctacaacaatcttacgggtaccattgagaaatggattgggagcctacgaaagctacagggtttgtatctcgaaggaaataatttcatcggatcaatcccctactcaattggcaacctgacaaggttaacattactctctgtttccaaaaatcagtttgacggtgtcatgccgtcaagcttgggaaattttccacaactcacaaagttagatcttagctataacaatttccaaggtaacatacctatgcaggtttccaaccttaaacaactcaccgaactacgcctttcatcaaacaagattactggggaaatcccaaataatttggatcgatgtgataacctaataactatccaactagaccaaaacatgctaaccggagaaattccatcatctcttggcaaactaagtggcttacaaagtctcaatttttcccataacaatttgtcaggcacaatcccgatagctcttagtgatcttcaatttctcagaatgctagacctatcttataaccatctccaaggtcaaatacctagaaatggtgtattcgaaaatcctgcagccttgttacttgatggcaattgggggctttgcggaggagcaccaagcctacataggacttcatgttatcatggttcccagaaattaaagatacagtactatttggtcagaatattgatcccaatatttgggtttatgtcattggtagcaataatctacttcatacttaccgagaagaagatgagaagAaaaaacactatgttgcctccttttggcaagcaatttctcaaagtatcttataaggatctggacgaagccacagaaaacttctccgagtctaacttgattggaagaggaagctatggttcggtgtacaaaggcaagttaagccagaacaaaatggaagtcgcagtgaaggtttttgaccttgagatgcatggggcagaaagaagtttcttggtagaatgtgaagcagttagaaacattcaacacagaaatcttctcccaatcataactgcatgctccacagccgacaacaatggaaatgccttcaaagctcttgtttatgaattcatgcccaatgggaatttggacagttggttgcatcacaaaggagatgagaaaacaaaagaacatctgaacttaactaaaagaattagcatagttcttgacatagcggatgtgttagactatttgcacaatagcatcggaaagccaatcatccattgtgatttgaagcccagtaacattctcctagattgtgatatgactgcttatttgggagactttgggattgcgagatttattctggattcaaggttgaaatcaagaggagattcaagttcagttgggttgagggggactatagggtatatcgctccaggtattgacgtattgttacttgccatatatttagtttcagttttcaaaaaagaattatttaatttctcgtggtattattagcatgaagtaacttctcgttgtgctaaccaacttactggcacctgtatatatttagagtacgctggaggtggtcacccatctacatgtggagacgtatacagttttggaattgtactcctggagatcttcacaggcaaaagaccaacagattcgatgttcgggaatgaactaaatatcgtgaattttgtaaagaagaatttcccggatcagatatggaatgtcattgatattcctctggaacaagaatgcaaagcatttactgcaggaaatatgacagcaaacgtgatgtaccaatgtttatcgtctctactagaagtagcactttcgtgtacaagggaattaccaaccgagcgaattagtatgagagaggcggccaacaggatgcatgaaataaacgcatcatatgttcgagggaaaggtccatatgctccacagtaatttaacttggtatgcgtacgtatatagtcttgctggtgctggtttataatgcaataaacatgtgcttcctcgtcgacagaattgggtaagagatgcacttgtactattcgtgtcacttacggcgaccgcaattctcaacccatgtattgtgatcaagtacagtaaacgagaacatgatgtacgtagtcccgtaataattacttattggtatatatactagtaatcatgcacgtgcattctctgttatatcatgtttcaacttaatatttgtcggtgaacaatcaatatgtatgcattacatcttgcttcaacctaatatttggcagt
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| CDS seq | atgggtgcgcggcgatccgggaaactccgcatgcttatgttatcagcattgttagtactattttgtggagctctcaacgctcgtgcatccacagttaatgagactagtgtggatctacgttcactgctcgatttcaaggcggagatcaaagacgatcccacaggagccttgctcgcttggaatgacagcctccactactgcaagtggacgggagttaattgcagcgcaacgcacccaggtcgtgttacggtgctcaacctcctcggcctaaacttggagggccaaataaccccctcccttggaaacctaactttccttaggaaacttatccttggctcaaatcgcttttccggtcggtttccacctctcaatcgtcttagaagactgcagatccttgccctgggcagcaactcgttccaggggaatattccagacgcactcacaaactgctcccaactagtggtcttagacctctcttctaacaattttgttggtgcgattccccccaacataggtttcctctccaacctacaggctctcgacctatctgcaaacaatctcactggagtaatcccaccatccttgaacaacatcacgcagttacaagaaatatcacttgcaaccaattccctcggaggaagaatcccagaagggcttgggcaattgccaagtatgacgatgatacttctaggccaaaacaatctatcgggtagaattccggcatcactctttaatctatcatatattaacacactagggttggatacaaatatgcttagtggcacattgtcatccaacattggtgatacacttccgcgcctccaattgctcctgttgggtgctaacatgctagaaggcaacatccctgcttcactgggcaatgtctcagagctagcacggatcgatttgtcatccaacagtttcgttggtcaagttcctagttcttttggtaaccttcgtaaactatattatctaaaccttgatcacaacaagattgaagcaggggacaatcaaagctgggaatttttaggtgcaatgagcaattgtcctctacaatttctttcattatatggaaatcaactacacggagatctgccaagctccgttggtaacctatccatcatgctccgacacctagatttaggtgctaaccacttgtcggggatagtaccaccaggtataggaaaatatcctgatttgtctagtctgggactaagctacaacaatcttacgggtaccattgagaaatggattgggagcctacgaaagctacagggtttgtatctcgaaggaaataatttcatcggatcaatcccctactcaattggcaacctgacaaggttaacattactctctgtttccaaaaatcagtttgacggtgtcatgccgtcaagcttgggaaattttccacaactcacaaagttagatcttagctataacaatttccaaggtaacatacctatgcaggtttccaaccttaaacaactcaccgaactacgcctttcatcaaacaagattactggggaaatcccaaataatttggatcgatgtgataacctaataactatccaactagaccaaaacatgctaaccggagaaattccatcatctcttggcaaactaagtggcttacaaagtctcaatttttcccataacaatttgtcaggcacaatcccgatagctcttagtgatcttcaatttctcagaatgctagacctatcttataaccatctccaaggtcaaatacctagaaatggtgtattcgaaaatcctgcagccttgttacttgatggcaattgggggctttgcggaggagcaccaagcctacataggacttcatgttatcatggttcccagaaattaaagatacagtactatttggtcagaatattgatcccaatatttgggtttatgtcattggtagcaataatctacttcatacttaccgagaagaagatgagaagAaaaaacactatgttgcctccttttggcaagcaatttctcaaagtatcttataaggatctggacgaagccacagaaaacttctccgagtctaacttgattggaagaggaagctatggttcggtgtacaaaggcaagttaagccagaacaaaatggaagtcgcagtgaaggtttttgaccttgagatgcatggggcagaaagaagtttcttggtagaatgtgaagcagttagaaacattcaacacagaaatcttctcccaatcataactgcatgctccacagccgacaacaatggaaatgccttcaaagctcttgtttatgaattcatgcccaatgggaatttggacagttggttgcatcacaaaggagatgagaaaacaaaagaacatctgaacttaactaaaagaattagcatagttcttgacatagcggatgtgttagactatttgcacaatagcatcggaaagccaatcatccattgtgatttgaagcccagtaacattctcctagattgtgatatgactgcttatttgggagactttgggattgcgagatttattctggattcaaggttgaaatcaagaggagattcaagttcagttgggttgagggggactatagggtatatcgctccagagtacgctggaggtggtcacccatctacatgtggagacgtatacagttttggaattgtactcctggagatcttcacaggcaaaagaccaacagattcgatgttcgggaatgaactaaatatcgtgaattttgtaaagaagaatttcccggatcagatatggaatgtcattgatattcctctggaacaagaatgcaaagcatttactgcaggaaatatgacagcaaacgtgatgtaccaatgtttatcgtctctactagaagtagcactttcgtgtacaagggaattaccaaccgagcgaattagtatgagagaggcggccaacaggatgcatgaaataaacgcatcatatgttcgagggaaaggtccatatgctccacagtaa
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| Protein seq | MGARRSGKLRMLMLSALLVLFCGALNARASTVNETSVDLRSLLDFKAEIKDDPTGALLAWNDSLHYCKWTGVNCSATHPGRVTVLNLLGLNLEGQITPSLGNLTFLRKLILGSNRFSGRFPPLNRLRRLQILALGSNSFQGNIPDALTNCSQLVVLDLSSNNFVGAIPPNIGFLSNLQALDLSANNLTGVIPPSLNNITQLQEISLATNSLGGRIPEGLGQLPSMTMILLGQNNLSGRIPASLFNLSYINTLGLDTNMLSGTLSSNIGDTLPRLQLLLLGANMLEGNIPASLGNVSELARIDLSSNSFVGQVPSSFGNLRKLYYLNLDHNKIEAGDNQSWEFLGAMSNCPLQFLSLYGNQLHGDLPSSVGNLSIMLRHLDLGANHLSGIVPPGIGKYPDLSSLGLSYNNLTGTIEKWIGSLRKLQGLYLEGNNFIGSIPYSIGNLTRLTLLSVSKNQFDGVMPSSLGNFPQLTKLDLSYNNFQGNIPMQVSNLKQLTELRLSSNKITGEIPNNLDRCDNLITIQLDQNMLTGEIPSSLGKLSGLQSLNFSHNNLSGTIPIALSDLQFLRMLDLSYNHLQGQIPRNGVFENPAALLLDGNWGLCGGAPSLHRTSCYHGSQKLKIQYYLVRILIPIFGFMSLVAIIYFILTEKKMRRKNTMLPPFGKQFLKVSYKDLDEATENFSESNLIGRGSYGSVYKGKLSQNKMEVAVKVFDLEMHGAERSFLVECEAVRNIQHRNLLPIITACSTADNNGNAFKALVYEFMPNGNLDSWLHHKGDEKTKEHLNLTKRISIVLDIADVLDYLHNSIGKPIIHCDLKPSNILLDCDMTAYLGDFGIARFILDSRLKSRGDSSSVGLRGTIGYIAPEYAGGGHPSTCGDVYSFGIVLLEIFTGKRPTDSMFGNELNIVNFVKKNFPDQIWNVIDIPLEQECKAFTAGNMTANVMYQCLSSLLEVALSCTRELPTERISMREAANRMHEINASYVRGKGPYAPQ |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024670 | OsLima_02g0024670.01 | Chr02 | 25701355 | 25705266 | + | NAM | ||
| CDS seq | atgggtgcgcggcgatccgggaaactccgcatgcttatgttatcagcattgttagtactattttgtggagctctcaacgctcgtgcatccacagttaatgagactagtgtggatctacgttcactgctcgatttcaaggcggagatcaaagacgatcccacaggagccttgctcgcttggaatgacagcctccactactgcaagtggacgggagttaattgcagcgcaacgcacccaggtcgtgttacggtgctcaacctcctcggcctaaacttggagggccaaataaccccctcccttggaaacctaactttccttaggaaacttatccttggctcaaatcgcttttccggtcggtttccacctctcaatcgtcttagaagactgcagatccttgccctgggcagcaactcgttccaggggaatattccagacgcactcacaaactgctcccaactagtggtcttagacctctcttctaacaattttgttggtgcgattccccccaacataggtttcctctccaacctacaggctctcgacctatctgcaaacaatctcactggagtaatcccaccatccttgaacaacatcacgcagttacaagaaatatcacttgcaaccaattccctcggaggaagaatcccagaagggcttgggcaattgccaagtatgacgatgatacttctaggccaaaacaatctatcgggtagaattccggcatcactctttaatctatcatatattaacacactagggttggatacaaatatgcttagtggcacattgtcatccaacattggtgatacacttccgcgcctccaattgctcctgttgggtgctaacatgctagaaggcaacatccctgcttcactgggcaatgtctcagagctagcacggatcgatttgtcatccaacagtttcgttggtcaagttcctagttcttttggtaaccttcgtaaactatattatctaaaccttgatcacaacaagattgaagcaggggacaatcaaagctgggaatttttaggtgcaatgagcaattgtcctctacaatttctttcattatatggaaatcaactacacggagatctgccaagctccgttggtaacctatccatcatgctccgacacctagatttaggtgctaaccacttgtcggggatagtaccaccaggtataggaaaatatcctgatttgtctagtctgggactaagctacaacaatcttacgggtaccattgagaaatggattgggagcctacgaaagctacagggtttgtatctcgaaggaaataatttcatcggatcaatcccctactcaattggcaacctgacaaggttaacattactctctgtttccaaaaatcagtttgacggtgtcatgccgtcaagcttgggaaattttccacaactcacaaagttagatcttagctataacaatttccaaggtaacatacctatgcaggtttccaaccttaaacaactcaccgaactacgcctttcatcaaacaagattactggggaaatcccaaataatttggatcgatgtgataacctaataactatccaactagaccaaaacatgctaaccggagaaattccatcatctcttggcaaactaagtggcttacaaagtctcaatttttcccataacaatttgtcaggcacaatcccgatagctcttagtgatcttcaatttctcagaatgctagacctatcttataaccatctccaaggtcaaatacctagaaatggtgtattcgaaaatcctgcagccttgttacttgatggcaattgggggctttgcggaggagcaccaagcctacataggacttcatgttatcatggttcccagaaattaaagatacagtactatttggtcagaatattgatcccaatatttgggtttatgtcattggtagcaataatctacttcatacttaccgagaagaagatgagaagAaaaaacactatgttgcctccttttggcaagcaatttctcaaagtatcttataaggatctggacgaagccacagaaaacttctccgagtctaacttgattggaagaggaagctatggttcggtgtacaaaggcaagttaagccagaacaaaatggaagtcgcagtgaaggtttttgaccttgagatgcatggggcagaaagaagtttcttggtagaatgtgaagcagttagaaacattcaacacagaaatcttctcccaatcataactgcatgctccacagccgacaacaatggaaatgccttcaaagctcttgtttatgaattcatgcccaatgggaatttggacagttggttgcatcacaaaggagatgagaaaacaaaagaacatctgaacttaactaaaagaattagcatagttcttgacatagcggatgtgttagactatttgcacaatagcatcggaaagccaatcatccattgtgatttgaagcccagtaacattctcctagattgtgatatgactgcttatttgggagactttgggattgcgagatttattctggattcaaggttgaaatcaagaggagattcaagttcagttgggttgagggggactatagggtatatcgctccagagtacgctggaggtggtcacccatctacatgtggagacgtatacagttttggaattgtactcctggagatcttcacaggcaaaagaccaacagattcgatgttcgggaatgaactaaatatcgtgaattttgtaaagaagaatttcccggatcagatatggaatgtcattgatattcctctggaacaagaatgcaaagcatttactgcaggaaatatgacagcaaacgtgatgtaccaatgtttatcgtctctactagaagtagcactttcgtgtacaagggaattaccaaccgagcgaattagtatgagagaggcggccaacaggatgcatgaaataaacgcatcatatgttcgagggaaaggtccatatgctccacagtaa
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| Protein seq | MGARRSGKLRMLMLSALLVLFCGALNARASTVNETSVDLRSLLDFKAEIKDDPTGALLAWNDSLHYCKWTGVNCSATHPGRVTVLNLLGLNLEGQITPSLGNLTFLRKLILGSNRFSGRFPPLNRLRRLQILALGSNSFQGNIPDALTNCSQLVVLDLSSNNFVGAIPPNIGFLSNLQALDLSANNLTGVIPPSLNNITQLQEISLATNSLGGRIPEGLGQLPSMTMILLGQNNLSGRIPASLFNLSYINTLGLDTNMLSGTLSSNIGDTLPRLQLLLLGANMLEGNIPASLGNVSELARIDLSSNSFVGQVPSSFGNLRKLYYLNLDHNKIEAGDNQSWEFLGAMSNCPLQFLSLYGNQLHGDLPSSVGNLSIMLRHLDLGANHLSGIVPPGIGKYPDLSSLGLSYNNLTGTIEKWIGSLRKLQGLYLEGNNFIGSIPYSIGNLTRLTLLSVSKNQFDGVMPSSLGNFPQLTKLDLSYNNFQGNIPMQVSNLKQLTELRLSSNKITGEIPNNLDRCDNLITIQLDQNMLTGEIPSSLGKLSGLQSLNFSHNNLSGTIPIALSDLQFLRMLDLSYNHLQGQIPRNGVFENPAALLLDGNWGLCGGAPSLHRTSCYHGSQKLKIQYYLVRILIPIFGFMSLVAIIYFILTEKKMRRKNTMLPPFGKQFLKVSYKDLDEATENFSESNLIGRGSYGSVYKGKLSQNKMEVAVKVFDLEMHGAERSFLVECEAVRNIQHRNLLPIITACSTADNNGNAFKALVYEFMPNGNLDSWLHHKGDEKTKEHLNLTKRISIVLDIADVLDYLHNSIGKPIIHCDLKPSNILLDCDMTAYLGDFGIARFILDSRLKSRGDSSSVGLRGTIGYIAPEYAGGGHPSTCGDVYSFGIVLLEIFTGKRPTDSMFGNELNIVNFVKKNFPDQIWNVIDIPLEQECKAFTAGNMTANVMYQCLSSLLEVALSCTRELPTERISMREAANRMHEINASYVRGKGPYAPQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024670 | OsLima_02g0024670.02 | Chr02 | 25701355 | 25705184 | + | NAM | ||
| CDS seq | atgggtgcgcggcgatccgggaaactccgcatgcttatgttatcagcattgttagtactattttgtggagctctcaacgctcgtgcatccacagttaatgagactagtgtggatctacgttcactgctcgatttcaaggcggagatcaaagacgatcccacaggagccttgctcgcttggaatgacagcctccactactgcaagtggacgggagttaattgcagcgcaacgcacccaggtcgtgttacggtgctcaacctcctcggcctaaacttggagggccaaataaccccctcccttggaaacctaactttccttaggaaacttatccttggctcaaatcgcttttccggtcggtttccacctctcaatcgtcttagaagactgcagatccttgccctgggcagcaactcgttccaggggaatattccagacgcactcacaaactgctcccaactagtggtcttagacctctcttctaacaattttgttggtgcgattccccccaacataggtttcctctccaacctacaggctctcgacctatctgcaaacaatctcactggagtaatcccaccatccttgaacaacatcacgcagttacaagaaatatcacttgcaaccaattccctcggaggaagaatcccagaagggcttgggcaattgccaagtatgacgatgatacttctaggccaaaacaatctatcgggtagaattccggcatcactctttaatctatcatatattaacacactagggttggatacaaatatgcttagtggcacattgtcatccaacattggtgatacacttccgcgcctccaattgctcctgttgggtgctaacatgctagaaggcaacatccctgcttcactgggcaatgtctcagagctagcacggatcgatttgtcatccaacagtttcgttggtcaagttcctagttcttttggtaaccttcgtaaactatattatctaaaccttgatcacaacaagattgaagcaggggacaatcaaagctgggaatttttaggtgcaatgagcaattgtcctctacaatttctttcattatatggaaatcaactacacggagatctgccaagctccgttggtaacctatccatcatgctccgacacctagatttaggtgctaaccacttgtcggggatagtaccaccaggtataggaaaatatcctgatttgtctagtctgggactaagctacaacaatcttacgggtaccattgagaaatggattgggagcctacgaaagctacagggtttgtatctcgaaggaaataatttcatcggatcaatcccctactcaattggcaacctgacaaggttaacattactctctgtttccaaaaatcagtttgacggtgtcatgccgtcaagcttgggaaattttccacaactcacaaagttagatcttagctataacaatttccaaggtaacatacctatgcaggtttccaaccttaaacaactcaccgaactacgcctttcatcaaacaagattactggggaaatcccaaataatttggatcgatgtgataacctaataactatccaactagaccaaaacatgctaaccggagaaattccatcatctcttggcaaactaagtggcttacaaagtctcaatttttcccataacaatttgtcaggcacaatcccgatagctcttagtgatcttcaatttctcagaatgctagacctatcttataaccatctccaaggtcaaatacctagaaatggtgtattcgaaaatcctgcagccttgttacttgatggcaattgggggctttgcggaggagcaccaagcctacataggacttcatgttatcatggttcccagaaattaaagatacagtactatttggtcagaatattgatcccaatatttgggtttatgtcattggtagcaataatctacttcatacttaccgagaagaagatgagaagAaaaaacactatgttgcctccttttggcaagcaatttctcaaagtatcttataaggatctggacgaagccacagaaaacttctccgagtctaacttgattggaagaggaagctatggttcggtgtacaaaggcaagttaagccagaacaaaatggaagtcgcagtgaaggtttttgaccttgagatgcatggggcagaaagaagtttcttggtagaatgtgaagcagttagaaacattcaacacagaaatcttctcccaatcataactgcatgctccacagccgacaacaatggaaatgccttcaaagctcttgtttatgaattcatgcccaatgggaatttggacagttggttgcatcacaaaggagatgagaaaacaaaagaacatctgaacttaactaaaagaattagcatagttcttgacatagcggatgtgttagactatttgcacaatagcatcggaaagccaatcatccattgtgatttgaagcccagtaacattctcctagattgtgatatgactgcttatttgggagactttgggattgcgagatttattctggattcaaggttgaaatcaagaggagattcaagttcagttgggttgagggggactatagggtatatcgctccaggtattgacgtattgttacttgccatatatttagtttcagttttcaaaaaagaattatttaatttctcgtggtattattag
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| Protein seq | MGARRSGKLRMLMLSALLVLFCGALNARASTVNETSVDLRSLLDFKAEIKDDPTGALLAWNDSLHYCKWTGVNCSATHPGRVTVLNLLGLNLEGQITPSLGNLTFLRKLILGSNRFSGRFPPLNRLRRLQILALGSNSFQGNIPDALTNCSQLVVLDLSSNNFVGAIPPNIGFLSNLQALDLSANNLTGVIPPSLNNITQLQEISLATNSLGGRIPEGLGQLPSMTMILLGQNNLSGRIPASLFNLSYINTLGLDTNMLSGTLSSNIGDTLPRLQLLLLGANMLEGNIPASLGNVSELARIDLSSNSFVGQVPSSFGNLRKLYYLNLDHNKIEAGDNQSWEFLGAMSNCPLQFLSLYGNQLHGDLPSSVGNLSIMLRHLDLGANHLSGIVPPGIGKYPDLSSLGLSYNNLTGTIEKWIGSLRKLQGLYLEGNNFIGSIPYSIGNLTRLTLLSVSKNQFDGVMPSSLGNFPQLTKLDLSYNNFQGNIPMQVSNLKQLTELRLSSNKITGEIPNNLDRCDNLITIQLDQNMLTGEIPSSLGKLSGLQSLNFSHNNLSGTIPIALSDLQFLRMLDLSYNHLQGQIPRNGVFENPAALLLDGNWGLCGGAPSLHRTSCYHGSQKLKIQYYLVRILIPIFGFMSLVAIIYFILTEKKMRRKNTMLPPFGKQFLKVSYKDLDEATENFSESNLIGRGSYGSVYKGKLSQNKMEVAVKVFDLEMHGAERSFLVECEAVRNIQHRNLLPIITACSTADNNGNAFKALVYEFMPNGNLDSWLHHKGDEKTKEHLNLTKRISIVLDIADVLDYLHNSIGKPIIHCDLKPSNILLDCDMTAYLGDFGIARFILDSRLKSRGDSSSVGLRGTIGYIAPGIDVLLLAIYLVSVFKKELFNFSWYY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0024670 | OsLima_02g0024670.03 | Chr02 | 25701355 | 25705184 | + | IsoSeq | ||
| CDS seq | tccaacgcagagctcatacaccacccggcaaaaccaagcaaagaaggatacggtgctttgcgctccggccgaccggagagtacgctggaggtggtcacccatctacatgtggagacgtatacagttttggaattgtactcctggagatcttcacaggcaaaagaccaacagattcgatgttcgggaatg |
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| Protein seq | SNAELIHHPAKPSKEGYGALRSGRPESTLEVVTHLHVETYTVLELYSWRSSQAKDQQIRCSGM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 25701433 | 25704557 | + | OsLima_02g0024670.02 | OsLima_02g0024670.03,OsLima_02g0024670.02 | All |
| SE | Chr02 | 25701433 | 25704557 | + | OsLima_02g0024670.01 | OsLima_02g0024670.03,OsLima_02g0024670.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.720768 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0615400 | SBH | 1.810530 | 3.247144 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40130 | SBH | 0.573867 | 1.093673 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | SBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | SBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025050 | SBH | 0.778974 | 0.000000 | 0.521185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024690 | SBH | 3.492460 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024610 | SBH | 1.116083 | 0.985470 | 3.219374 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0396700 | SBH | 2.187931 | 0.0432085 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024560 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0425600 | SBH | 3.2197335 | 0.0065365 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018860 | RBH | 0.0 | 0.309818 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024660 | SBH | 4.461609 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0024950 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0024410 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024890 | SBH | 0.206270 | 0.000000 | 0.311611 |
